Wall clock time and date at job start Wed Apr 1 2020 04:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 120.00049 * 2 1 4 4 H 1.48502 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47406 * 300.00335 * 3 2 1 6 6 H 1.48507 * 109.47014 * 60.00361 * 3 2 1 7 7 C 1.38652 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 179.97438 * 7 2 1 9 9 O 1.34836 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99959 * 185.05369 * 9 7 2 11 11 C 1.38882 * 120.06670 * 354.46588 * 10 9 7 12 12 C 1.38103 * 119.92532 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.07033 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93098 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47257 * 89.99538 * 14 13 12 16 16 O 1.21286 * 120.00294 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.40099 * 120.00322 * 180.02562 * 17 15 14 19 19 C 1.39003 * 119.99751 * 179.97438 * 18 17 15 20 20 C 1.39082 * 119.69425 * 179.97438 * 19 18 17 21 21 C 1.38448 * 119.07975 * 179.69813 * 20 19 18 22 22 Cl 1.73596 * 120.76128 * 180.25229 * 21 20 19 23 23 C 1.39035 * 118.47746 * 0.27875 * 21 20 19 24 24 C 1.37966 * 119.31031 * 359.97438 * 23 21 20 25 25 N 1.31989 * 120.87603 * 0.02562 * 24 23 21 26 26 C 1.38303 * 120.13818 * 0.24770 * 13 12 11 27 27 C 1.38098 * 120.06792 * 359.45665 * 26 13 12 28 28 H 0.96998 * 119.99733 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.03429 * 359.97438 * 11 10 9 30 30 H 1.07996 * 119.96158 * 180.02562 * 12 11 10 31 31 H 1.09000 * 109.47006 * 329.99562 * 14 13 12 32 32 H 1.08995 * 109.47240 * 209.99745 * 14 13 12 33 33 H 0.97005 * 119.99341 * 359.97438 * 17 15 14 34 34 H 0.96995 * 119.99751 * 359.97438 * 18 17 15 35 35 H 1.07999 * 120.46054 * 359.97438 * 20 19 18 36 36 H 1.07996 * 120.34301 * 179.97438 * 23 21 20 37 37 H 1.08004 * 119.56330 * 180.02562 * 24 23 21 38 38 H 1.07998 * 119.96315 * 179.71022 * 26 13 12 39 39 H 1.08003 * 120.03360 * 180.26675 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 3.4571 -3.4395 0.0951 12 6 4.2022 -4.5972 0.2037 13 6 3.5684 -5.8204 0.3243 14 6 4.3846 -7.0818 0.4420 15 6 4.6631 -7.3662 1.8955 16 8 4.2408 -6.6179 2.7516 17 7 5.3823 -8.4514 2.2441 18 7 5.6407 -8.7161 3.5954 19 6 6.3820 -9.8356 3.9549 20 6 6.6353 -10.0920 5.2982 21 6 7.3696 -11.2142 5.6423 22 17 7.7058 -11.5796 7.3057 23 6 7.8321 -12.0414 4.6249 24 6 7.5474 -11.7225 3.3132 25 7 6.8447 -10.6457 3.0150 26 6 2.1871 -5.8891 0.3314 27 6 1.4364 -4.7345 0.2293 28 1 -0.4850 0.8401 0.0004 29 1 3.9526 -2.4846 -0.0002 30 1 5.2810 -4.5471 0.1945 31 1 5.3272 -6.9557 -0.0906 32 1 3.8309 -7.9146 0.0085 33 1 5.7203 -9.0497 1.5594 34 1 5.3024 -8.1181 4.2800 35 1 6.2605 -9.4275 6.0626 36 1 8.4081 -12.9244 4.8592 37 1 7.9043 -12.3625 2.5197 38 1 1.6951 -6.8463 0.4209 39 1 0.3578 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183038107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:20 Heat of formation + Delta-G solvation = 34.119652 kcal Electronic energy + Delta-G solvation = -25396.646545 eV Core-core repulsion = 21332.489185 eV Total energy + Delta-G solvation = -4064.157360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84932 -39.83490 -38.83391 -37.28792 -36.69699 -35.97823 -32.89735 -32.53948 -32.37669 -31.32424 -30.15803 -29.09159 -26.52666 -25.11908 -24.25439 -23.18707 -21.98077 -21.52363 -20.36920 -18.88694 -18.00017 -17.95502 -17.00220 -16.90669 -16.30518 -16.04842 -15.65291 -14.99462 -14.92948 -14.66970 -14.46014 -14.30721 -14.22276 -13.91224 -13.59426 -13.39271 -13.03745 -12.80282 -12.71603 -12.59095 -12.06557 -11.77566 -11.55675 -11.51717 -11.28379 -10.89251 -10.78720 -10.60731 -10.41683 -10.19439 -9.99502 -9.96143 -9.83930 -9.32118 -8.82479 -8.15493 -7.86443 -7.17917 -6.44457 -4.02929 0.59007 0.75889 1.31366 1.74423 2.25158 2.34228 2.57073 3.12712 3.14702 3.20137 3.29364 3.43996 3.97421 4.22261 4.42669 4.49534 4.52370 4.76312 4.94426 5.05415 5.08523 5.16554 5.20084 5.24920 5.31107 5.54805 5.60385 5.71612 5.83842 5.90219 6.21644 6.37206 6.41634 6.70051 6.87728 6.91116 7.05631 7.22767 7.28002 7.35940 7.45175 7.61197 7.83249 8.00920 8.21743 9.01344 9.71435 10.73633 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.001617 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.851966 B =17310.717120 C =17896.601477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.177 6.177 10 C 0.158 3.842 11 C -0.233 4.233 12 C -0.054 4.054 13 C -0.174 4.174 14 C -0.066 4.066 15 C 0.508 3.492 16 O -0.521 6.521 17 N -0.526 5.526 18 N -0.513 5.513 19 C 0.422 3.578 20 C -0.229 4.229 21 C 0.058 3.942 22 Cl -0.051 7.051 23 C -0.232 4.232 24 C 0.172 3.828 25 N -0.547 5.547 26 C -0.057 4.057 27 C -0.192 4.192 28 H 0.269 0.731 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.430 0.570 34 H 0.443 0.557 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.168 0.832 38 H 0.109 0.891 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.503 -24.814 6.926 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.104 3.896 11 C -0.252 4.252 12 C -0.072 4.072 13 C -0.176 4.176 14 C -0.107 4.107 15 C 0.295 3.705 16 O -0.394 6.394 17 N -0.275 5.275 18 N -0.240 5.240 19 C 0.184 3.816 20 C -0.256 4.256 21 C 0.023 3.977 22 Cl -0.022 7.022 23 C -0.256 4.256 24 C 0.014 3.986 25 N -0.266 5.266 26 C -0.076 4.076 27 C -0.211 4.211 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.272 0.728 34 H 0.288 0.712 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.185 0.815 38 H 0.127 0.873 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.530 -23.764 6.618 29.149 hybrid contribution 0.788 0.516 1.132 1.473 sum 16.318 -23.248 7.750 29.442 Atomic orbital electron populations 1.70053 1.05953 1.27552 1.46150 1.25299 0.95856 0.98853 0.96569 0.85641 0.79146 0.80362 0.78237 1.19096 1.20140 1.20146 1.21387 0.91848 0.80805 1.52660 0.88980 1.83979 1.34421 1.11496 1.78158 1.19396 0.90302 0.88038 0.91841 1.21110 0.93804 0.98793 1.11533 1.20516 0.98090 0.91728 0.96893 1.18553 0.93151 0.92497 1.13389 1.20310 1.01740 0.98525 0.90102 1.21544 0.77125 0.78876 0.92992 1.90775 1.50218 1.46727 1.51665 1.45182 1.57070 1.28915 0.96347 1.43242 1.56940 1.25637 0.98141 1.18014 0.88810 0.86337 0.88413 1.20981 1.07965 1.01203 0.95442 1.20875 0.95914 0.94540 0.86366 1.98408 1.93660 1.94064 1.16086 1.21764 1.07882 1.03301 0.92674 1.22415 0.90265 0.90995 0.94921 1.67086 1.16517 1.06952 1.36078 1.20409 0.92704 0.96776 0.97677 1.20158 0.99538 0.90261 1.11156 0.92075 0.85530 0.87731 0.88376 0.88336 0.72821 0.71201 0.83698 0.83876 0.81487 0.87281 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.14 9.76 0.02 0.00 -5.13 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.23 -5.16 9.17 -39.39 -0.36 -5.52 16 12 C -0.05 -1.00 9.69 -39.61 -0.38 -1.38 16 13 C -0.17 -2.92 4.38 -104.58 -0.46 -3.38 16 14 C -0.07 -0.76 5.83 -29.03 -0.17 -0.93 16 15 C 0.51 6.63 7.94 -10.99 -0.09 6.54 16 16 O -0.52 -9.21 15.87 5.55 0.09 -9.12 16 17 N -0.53 -5.40 6.29 31.22 0.20 -5.20 16 18 N -0.51 -5.19 6.42 31.12 0.20 -4.99 16 19 C 0.42 3.88 7.59 -155.02 -1.18 2.70 16 20 C -0.23 -1.83 9.76 -39.19 -0.38 -2.22 16 21 C 0.06 0.43 6.37 -39.21 -0.25 0.18 16 22 Cl -0.05 -0.36 29.02 -51.86 -1.50 -1.86 16 23 C -0.23 -1.42 9.93 -39.39 -0.39 -1.81 16 24 C 0.17 1.08 11.17 -17.58 -0.20 0.88 16 25 N -0.55 -4.72 9.37 -12.45 -0.12 -4.84 16 26 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 27 C -0.19 -4.14 9.99 -39.40 -0.39 -4.53 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 30 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.43 3.53 7.95 -182.59 -1.45 2.08 16 34 H 0.44 4.49 7.99 -182.60 -1.46 3.04 16 35 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -34.60 364.01 -10.60 -45.20 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.99 Total: 6.52 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -4.70 Total: -17.04 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 1.04 Total: -39.78 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.60 -10.60 -45.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183038107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.324 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds