Wall clock time and date at job start Wed Apr 1 2020 04:22:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31564 * 1
3 3 Si 1.86795 * 120.00049 * 2 1
4 4 H 1.48502 * 109.46953 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47406 * 300.00335 * 3 2 1
6 6 H 1.48507 * 109.47014 * 60.00361 * 3 2 1
7 7 C 1.38652 * 119.99743 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99657 * 179.97438 * 7 2 1
9 9 O 1.34836 * 120.00195 * 0.02562 * 7 2 1
10 10 C 1.35753 * 116.99959 * 185.05369 * 9 7 2
11 11 C 1.38882 * 120.06670 * 354.46588 * 10 9 7
12 12 C 1.38103 * 119.92532 * 180.02562 * 11 10 9
13 13 C 1.38298 * 120.07033 * 0.02562 * 12 11 10
14 14 C 1.50702 * 119.93098 * 179.97438 * 13 12 11
15 15 C 1.50698 * 109.47257 * 89.99538 * 14 13 12
16 16 O 1.21286 * 120.00294 * 359.97438 * 15 14 13
17 17 N 1.34779 * 120.00233 * 180.02562 * 15 14 13
18 18 N 1.40099 * 120.00322 * 180.02562 * 17 15 14
19 19 C 1.39003 * 119.99751 * 179.97438 * 18 17 15
20 20 C 1.39082 * 119.69425 * 179.97438 * 19 18 17
21 21 C 1.38448 * 119.07975 * 179.69813 * 20 19 18
22 22 Cl 1.73596 * 120.76128 * 180.25229 * 21 20 19
23 23 C 1.39035 * 118.47746 * 0.27875 * 21 20 19
24 24 C 1.37966 * 119.31031 * 359.97438 * 23 21 20
25 25 N 1.31989 * 120.87603 * 0.02562 * 24 23 21
26 26 C 1.38303 * 120.13818 * 0.24770 * 13 12 11
27 27 C 1.38098 * 120.06792 * 359.45665 * 26 13 12
28 28 H 0.96998 * 119.99733 * 359.97438 * 1 2 3
29 29 H 1.07993 * 120.03429 * 359.97438 * 11 10 9
30 30 H 1.07996 * 119.96158 * 180.02562 * 12 11 10
31 31 H 1.09000 * 109.47006 * 329.99562 * 14 13 12
32 32 H 1.08995 * 109.47240 * 209.99745 * 14 13 12
33 33 H 0.97005 * 119.99341 * 359.97438 * 17 15 14
34 34 H 0.96995 * 119.99751 * 359.97438 * 18 17 15
35 35 H 1.07999 * 120.46054 * 359.97438 * 20 19 18
36 36 H 1.07996 * 120.34301 * 179.97438 * 23 21 20
37 37 H 1.08004 * 119.56330 * 180.02562 * 24 23 21
38 38 H 1.07998 * 119.96315 * 179.71022 * 26 13 12
39 39 H 1.08003 * 120.03360 * 180.26675 * 27 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 3.7096 1.3463 0.0006
5 1 1.8909 2.3965 -1.2124
6 1 1.8909 2.3964 1.2126
7 6 2.0088 -1.2008 0.0005
8 1 3.0889 -1.2008 0.0001
9 8 1.3346 -2.3685 0.0005
10 6 2.0699 -3.5046 0.1076
11 6 3.4571 -3.4395 0.0951
12 6 4.2022 -4.5972 0.2037
13 6 3.5684 -5.8204 0.3243
14 6 4.3846 -7.0818 0.4420
15 6 4.6631 -7.3662 1.8955
16 8 4.2408 -6.6179 2.7516
17 7 5.3823 -8.4514 2.2441
18 7 5.6407 -8.7161 3.5954
19 6 6.3820 -9.8356 3.9549
20 6 6.6353 -10.0920 5.2982
21 6 7.3696 -11.2142 5.6423
22 17 7.7058 -11.5796 7.3057
23 6 7.8321 -12.0414 4.6249
24 6 7.5474 -11.7225 3.3132
25 7 6.8447 -10.6457 3.0150
26 6 2.1871 -5.8891 0.3314
27 6 1.4364 -4.7345 0.2293
28 1 -0.4850 0.8401 0.0004
29 1 3.9526 -2.4846 -0.0002
30 1 5.2810 -4.5471 0.1945
31 1 5.3272 -6.9557 -0.0906
32 1 3.8309 -7.9146 0.0085
33 1 5.7203 -9.0497 1.5594
34 1 5.3024 -8.1181 4.2800
35 1 6.2605 -9.4275 6.0626
36 1 8.4081 -12.9244 4.8592
37 1 7.9043 -12.3625 2.5197
38 1 1.6951 -6.8463 0.4209
39 1 0.3578 -4.7884 0.2392
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183038107.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:22:20
Heat of formation + Delta-G solvation = 34.119652 kcal
Electronic energy + Delta-G solvation = -25396.646545 eV
Core-core repulsion = 21332.489185 eV
Total energy + Delta-G solvation = -4064.157360 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.082 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.84932 -39.83490 -38.83391 -37.28792 -36.69699 -35.97823 -32.89735 -32.53948
-32.37669 -31.32424 -30.15803 -29.09159 -26.52666 -25.11908 -24.25439 -23.18707
-21.98077 -21.52363 -20.36920 -18.88694 -18.00017 -17.95502 -17.00220 -16.90669
-16.30518 -16.04842 -15.65291 -14.99462 -14.92948 -14.66970 -14.46014 -14.30721
-14.22276 -13.91224 -13.59426 -13.39271 -13.03745 -12.80282 -12.71603 -12.59095
-12.06557 -11.77566 -11.55675 -11.51717 -11.28379 -10.89251 -10.78720 -10.60731
-10.41683 -10.19439 -9.99502 -9.96143 -9.83930 -9.32118 -8.82479 -8.15493
-7.86443 -7.17917 -6.44457 -4.02929 0.59007 0.75889 1.31366 1.74423
2.25158 2.34228 2.57073 3.12712 3.14702 3.20137 3.29364 3.43996
3.97421 4.22261 4.42669 4.49534 4.52370 4.76312 4.94426 5.05415
5.08523 5.16554 5.20084 5.24920 5.31107 5.54805 5.60385 5.71612
5.83842 5.90219 6.21644 6.37206 6.41634 6.70051 6.87728 6.91116
7.05631 7.22767 7.28002 7.35940 7.45175 7.61197 7.83249 8.00920
8.21743 9.01344 9.71435 10.73633
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.022469 B = 0.001617 C = 0.001564
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1245.851966 B =17310.717120 C =17896.601477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.862 5.862
2 C 0.038 3.962
3 Si 0.941 3.059
4 H -0.267 1.267
5 H -0.276 1.276
6 H -0.276 1.276
7 C -0.391 4.391
8 H 0.093 0.907
9 O -0.177 6.177
10 C 0.158 3.842
11 C -0.233 4.233
12 C -0.054 4.054
13 C -0.174 4.174
14 C -0.066 4.066
15 C 0.508 3.492
16 O -0.521 6.521
17 N -0.526 5.526
18 N -0.513 5.513
19 C 0.422 3.578
20 C -0.229 4.229
21 C 0.058 3.942
22 Cl -0.051 7.051
23 C -0.232 4.232
24 C 0.172 3.828
25 N -0.547 5.547
26 C -0.057 4.057
27 C -0.192 4.192
28 H 0.269 0.731
29 H 0.127 0.873
30 H 0.105 0.895
31 H 0.098 0.902
32 H 0.098 0.902
33 H 0.430 0.570
34 H 0.443 0.557
35 H 0.145 0.855
36 H 0.143 0.857
37 H 0.168 0.832
38 H 0.109 0.891
39 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.503 -24.814 6.926 30.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.497 5.497
2 C -0.166 4.166
3 Si 0.766 3.234
4 H -0.191 1.191
5 H -0.201 1.201
6 H -0.201 1.201
7 C -0.467 4.467
8 H 0.110 0.890
9 O -0.081 6.081
10 C 0.104 3.896
11 C -0.252 4.252
12 C -0.072 4.072
13 C -0.176 4.176
14 C -0.107 4.107
15 C 0.295 3.705
16 O -0.394 6.394
17 N -0.275 5.275
18 N -0.240 5.240
19 C 0.184 3.816
20 C -0.256 4.256
21 C 0.023 3.977
22 Cl -0.022 7.022
23 C -0.256 4.256
24 C 0.014 3.986
25 N -0.266 5.266
26 C -0.076 4.076
27 C -0.211 4.211
28 H 0.079 0.921
29 H 0.145 0.855
30 H 0.123 0.877
31 H 0.116 0.884
32 H 0.117 0.883
33 H 0.272 0.728
34 H 0.288 0.712
35 H 0.163 0.837
36 H 0.161 0.839
37 H 0.185 0.815
38 H 0.127 0.873
39 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 15.530 -23.764 6.618 29.149
hybrid contribution 0.788 0.516 1.132 1.473
sum 16.318 -23.248 7.750 29.442
Atomic orbital electron populations
1.70053 1.05953 1.27552 1.46150 1.25299 0.95856 0.98853 0.96569
0.85641 0.79146 0.80362 0.78237 1.19096 1.20140 1.20146 1.21387
0.91848 0.80805 1.52660 0.88980 1.83979 1.34421 1.11496 1.78158
1.19396 0.90302 0.88038 0.91841 1.21110 0.93804 0.98793 1.11533
1.20516 0.98090 0.91728 0.96893 1.18553 0.93151 0.92497 1.13389
1.20310 1.01740 0.98525 0.90102 1.21544 0.77125 0.78876 0.92992
1.90775 1.50218 1.46727 1.51665 1.45182 1.57070 1.28915 0.96347
1.43242 1.56940 1.25637 0.98141 1.18014 0.88810 0.86337 0.88413
1.20981 1.07965 1.01203 0.95442 1.20875 0.95914 0.94540 0.86366
1.98408 1.93660 1.94064 1.16086 1.21764 1.07882 1.03301 0.92674
1.22415 0.90265 0.90995 0.94921 1.67086 1.16517 1.06952 1.36078
1.20409 0.92704 0.96776 0.97677 1.20158 0.99538 0.90261 1.11156
0.92075 0.85530 0.87731 0.88376 0.88336 0.72821 0.71201 0.83698
0.83876 0.81487 0.87281 0.86485
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16
2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16
3 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16
4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16
5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16
7 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16
8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16
9 O -0.18 -5.14 9.76 0.02 0.00 -5.13 16
10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16
11 C -0.23 -5.16 9.17 -39.39 -0.36 -5.52 16
12 C -0.05 -1.00 9.69 -39.61 -0.38 -1.38 16
13 C -0.17 -2.92 4.38 -104.58 -0.46 -3.38 16
14 C -0.07 -0.76 5.83 -29.03 -0.17 -0.93 16
15 C 0.51 6.63 7.94 -10.99 -0.09 6.54 16
16 O -0.52 -9.21 15.87 5.55 0.09 -9.12 16
17 N -0.53 -5.40 6.29 31.22 0.20 -5.20 16
18 N -0.51 -5.19 6.42 31.12 0.20 -4.99 16
19 C 0.42 3.88 7.59 -155.02 -1.18 2.70 16
20 C -0.23 -1.83 9.76 -39.19 -0.38 -2.22 16
21 C 0.06 0.43 6.37 -39.21 -0.25 0.18 16
22 Cl -0.05 -0.36 29.02 -51.86 -1.50 -1.86 16
23 C -0.23 -1.42 9.93 -39.39 -0.39 -1.81 16
24 C 0.17 1.08 11.17 -17.58 -0.20 0.88 16
25 N -0.55 -4.72 9.37 -12.45 -0.12 -4.84 16
26 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16
27 C -0.19 -4.14 9.99 -39.40 -0.39 -4.53 16
28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16
29 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16
30 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16
31 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16
32 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16
33 H 0.43 3.53 7.95 -182.59 -1.45 2.08 16
34 H 0.44 4.49 7.99 -182.60 -1.46 3.04 16
35 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16
36 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16
37 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16
38 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16
39 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16
LS Contribution 364.01 15.07 5.49 5.49
Total: -1.00 -34.60 364.01 -10.60 -45.20
By element:
Atomic # 1 Polarization: 12.51 SS G_CDS: -5.99 Total: 6.52 kcal
Atomic # 6 Polarization: -12.34 SS G_CDS: -4.70 Total: -17.04 kcal
Atomic # 7 Polarization: -40.82 SS G_CDS: 1.04 Total: -39.78 kcal
Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.26 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal
Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -34.60 -10.60 -45.20 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183038107.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.324 kcal
(2) G-P(sol) polarization free energy of solvation -34.600 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.724 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.120 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds