Wall clock time and date at job start Wed Apr 1 2020 04:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86806 * 119.99673 * 2 1 4 4 H 1.48492 * 109.46990 * 269.99359 * 3 2 1 5 5 H 1.48500 * 109.47032 * 29.99979 * 3 2 1 6 6 H 1.48501 * 109.46922 * 149.99684 * 3 2 1 7 7 C 1.38645 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99808 * 180.02562 * 7 2 1 9 9 O 1.34825 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00356 * 174.94427 * 9 7 2 11 11 C 1.38879 * 120.06760 * 5.53407 * 10 9 7 12 12 C 1.38101 * 119.93031 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.07054 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.93093 * 179.97438 * 13 12 11 15 15 N 1.46508 * 109.47002 * 89.99966 * 14 13 12 16 16 C 1.34775 * 119.99830 * 179.97438 * 15 14 13 17 17 O 1.21579 * 119.99994 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99937 * 179.97438 * 16 15 14 19 19 C 1.39385 * 119.99858 * 174.88980 * 18 16 15 20 20 C 1.39016 * 119.68692 * 185.12020 * 19 18 16 21 21 C 1.38394 * 119.13187 * 179.75613 * 20 19 18 22 22 C 1.38780 * 118.50811 * 0.51018 * 21 20 19 23 23 C 1.38241 * 119.30293 * 359.73170 * 22 21 20 24 24 Cl 1.73598 * 119.59018 * 179.97438 * 23 22 21 25 25 N 1.32032 * 120.81194 * 0.02562 * 23 22 21 26 26 C 1.38306 * 120.13979 * 0.24843 * 13 12 11 27 27 C 1.38100 * 120.06691 * 359.45001 * 26 13 12 28 28 H 0.96999 * 120.00361 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.03421 * 0.02562 * 11 10 9 30 30 H 1.08004 * 119.96426 * 179.97438 * 12 11 10 31 31 H 1.09001 * 109.46828 * 209.99237 * 14 13 12 32 32 H 1.08993 * 109.47233 * 330.00015 * 14 13 12 33 33 H 0.97000 * 119.99573 * 359.97438 * 15 14 13 34 34 H 0.97006 * 119.99586 * 354.89406 * 18 16 15 35 35 H 1.07993 * 120.43321 * 359.97438 * 20 19 18 36 36 H 1.07994 * 120.74516 * 180.21544 * 21 20 19 37 37 H 1.08001 * 120.34898 * 179.74930 * 22 21 20 38 38 H 1.08001 * 119.96615 * 179.70121 * 26 13 12 39 39 H 1.07993 * 120.03896 * 180.26869 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0701 -3.5045 -0.1055 11 6 3.4573 -3.4394 -0.0920 12 6 4.2025 -4.5970 -0.2006 13 6 3.5689 -5.8201 -0.3233 14 6 4.3852 -7.0813 -0.4421 15 7 4.6427 -7.6241 0.8941 16 6 5.3588 -8.7572 1.0346 17 8 5.7915 -9.3286 0.0526 18 7 5.5961 -9.2563 2.2639 19 6 6.2438 -10.4824 2.4051 20 6 6.3904 -11.0420 3.6692 21 6 7.0309 -12.2623 3.7956 22 6 7.5143 -12.8785 2.6499 23 6 7.3382 -12.2627 1.4248 24 17 7.9404 -13.0265 -0.0131 25 7 6.7184 -11.1003 1.3351 26 6 2.1876 -5.8878 -0.3427 27 6 1.4367 -4.7345 -0.2282 28 1 -0.4850 0.8400 -0.0004 29 1 3.9527 -2.4844 0.0033 30 1 5.2813 -4.5469 -0.1906 31 1 3.8365 -7.8149 -1.0327 32 1 5.3327 -6.8560 -0.9315 33 1 4.2978 -7.1679 1.6776 34 1 5.3160 -8.7622 3.0503 35 1 6.0064 -10.5329 4.5407 36 1 7.1560 -12.7224 4.7646 37 1 8.0225 -13.8293 2.7146 38 1 1.6958 -6.8440 -0.4434 39 1 0.3582 -4.7883 -0.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183812563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:07 Heat of formation + Delta-G solvation = 17.862578 kcal Electronic energy + Delta-G solvation = -25522.687133 eV Core-core repulsion = 21457.824814 eV Total energy + Delta-G solvation = -4064.862319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14790 -39.65488 -39.06576 -37.05372 -36.81695 -35.10650 -34.42916 -32.83469 -32.39746 -30.68629 -30.29884 -29.44159 -26.01417 -24.98980 -24.12547 -23.46865 -22.08634 -21.08952 -20.67220 -18.93378 -18.40796 -18.09268 -17.05421 -16.74894 -16.31336 -15.91956 -15.63352 -14.95167 -14.87475 -14.71334 -14.52537 -14.40346 -13.94709 -13.70839 -13.62123 -13.47666 -12.92895 -12.81496 -12.63172 -12.34445 -12.03847 -11.71387 -11.50627 -11.42849 -10.99635 -10.92830 -10.81401 -10.72541 -10.57598 -10.51090 -10.10060 -9.49003 -9.46015 -9.04919 -8.93975 -8.57070 -8.31925 -7.36800 -6.55807 -4.14766 0.56373 0.85656 1.51313 1.91250 2.09828 2.46614 2.97676 3.06495 3.07887 3.12258 3.50748 3.86299 3.88167 4.21368 4.45493 4.49835 4.62470 4.72012 4.84790 4.98247 5.12192 5.19702 5.35102 5.40896 5.63463 5.65525 5.73341 5.78476 5.86696 6.08878 6.26273 6.32028 6.45688 6.50983 6.57092 6.77231 6.92982 7.11287 7.24137 7.32060 7.40155 7.68055 7.88401 7.88850 8.47666 8.89495 9.57230 10.61598 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.001632 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.439810 B =17155.475784 C =17381.451118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.238 4.238 12 C -0.049 4.049 13 C -0.216 4.216 14 C 0.198 3.802 15 N -0.732 5.732 16 C 0.688 3.312 17 O -0.529 6.529 18 N -0.671 5.671 19 C 0.406 3.594 20 C -0.211 4.211 21 C -0.033 4.033 22 C -0.196 4.196 23 C 0.211 3.789 24 Cl -0.029 7.029 25 N -0.470 5.470 26 C -0.053 4.053 27 C -0.196 4.196 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.397 0.603 34 H 0.416 0.584 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.113 0.887 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.117 -21.955 9.324 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.068 4.068 13 C -0.217 4.217 14 C 0.076 3.924 15 N -0.388 5.388 16 C 0.387 3.613 17 O -0.399 6.399 18 N -0.319 5.319 19 C 0.172 3.828 20 C -0.235 4.235 21 C -0.059 4.059 22 C -0.219 4.219 23 C 0.045 3.955 24 Cl -0.001 7.001 25 N -0.187 5.187 26 C -0.072 4.072 27 C -0.215 4.215 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.232 0.768 34 H 0.253 0.747 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.131 0.869 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.941 -21.805 7.377 26.407 hybrid contribution 0.271 1.014 1.400 1.750 sum 13.212 -20.791 8.778 26.151 Atomic orbital electron populations 1.70034 1.06008 1.27908 1.45329 1.25324 0.95870 0.98955 0.96321 0.85690 0.78916 0.79886 0.78835 1.19766 1.20178 1.19138 1.21357 0.91877 0.80702 1.53029 0.88897 1.83976 1.34532 1.11570 1.77446 1.19447 0.90325 0.88051 0.91564 1.21163 0.93767 0.98974 1.11802 1.20652 0.98408 0.91649 0.96087 1.19193 0.93536 0.93424 1.15569 1.19880 0.98591 0.92313 0.81657 1.45592 1.56865 1.25612 1.10780 1.16133 0.80322 0.81717 0.83114 1.91072 1.53167 1.59680 1.36029 1.42856 1.59909 1.19759 1.09400 1.17892 0.90509 0.85871 0.88512 1.21524 1.06733 0.98670 0.96597 1.21317 0.92774 0.93030 0.98766 1.21723 1.05926 1.03072 0.91146 1.21433 0.95136 0.90904 0.88021 1.98417 1.84958 1.77981 1.38706 1.66833 1.11645 1.08641 1.31573 1.20543 0.92758 0.96850 0.97006 1.20217 0.99689 0.90292 1.11313 0.91850 0.85411 0.87358 0.91474 0.91512 0.76846 0.74697 0.83828 0.83391 0.83762 0.86922 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.42 13.67 55.48 0.76 -23.66 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.39 -10.57 9.49 30.88 0.29 -10.28 16 8 H 0.09 2.30 5.20 -52.48 -0.27 2.02 16 9 O -0.17 -4.73 9.76 0.06 0.00 -4.73 16 10 C 0.16 3.67 6.65 -39.10 -0.26 3.41 16 11 C -0.24 -4.82 9.17 -39.39 -0.36 -5.18 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.22 -3.34 5.25 -104.58 -0.55 -3.89 16 14 C 0.20 2.72 5.80 -5.19 -0.03 2.69 16 15 N -0.73 -8.72 5.55 -66.41 -0.37 -9.09 16 16 C 0.69 9.23 8.52 -86.92 -0.74 8.49 16 17 O -0.53 -9.42 14.61 5.30 0.08 -9.34 16 18 N -0.67 -6.57 5.39 -15.82 -0.09 -6.65 16 19 C 0.41 4.34 7.42 -154.72 -1.15 3.19 16 20 C -0.21 -1.43 9.94 -39.24 -0.39 -1.82 16 21 C -0.03 -0.19 10.17 -39.32 -0.40 -0.59 16 22 C -0.20 -1.47 9.87 -39.38 -0.39 -1.86 16 23 C 0.21 2.35 7.27 -17.46 -0.13 2.23 16 24 Cl -0.03 -0.32 29.10 -51.86 -1.51 -1.83 16 25 N -0.47 -6.41 7.87 -9.49 -0.07 -6.49 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 27 C -0.20 -3.86 9.99 -39.39 -0.39 -4.25 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.13 2.61 5.64 -52.48 -0.30 2.32 16 30 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.40 3.90 8.48 -40.82 -0.35 3.56 16 34 H 0.42 2.37 8.72 -40.82 -0.36 2.02 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -34.30 362.10 -9.91 -44.21 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -3.78 Total: 6.64 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -5.36 Total: -9.34 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.23 Total: -45.89 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.08 Total: -14.06 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.30 -9.91 -44.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.073 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds