Wall clock time and date at job start Wed Apr 1 2020 04:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86806 * 119.99673 * 2 1 4 4 H 1.48492 * 109.46990 * 269.99359 * 3 2 1 5 5 H 1.48500 * 109.47032 * 29.99979 * 3 2 1 6 6 H 1.48501 * 109.46922 * 149.99684 * 3 2 1 7 7 C 1.38645 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99808 * 180.02562 * 7 2 1 9 9 O 1.34825 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00356 * 174.94427 * 9 7 2 11 11 C 1.38879 * 120.06760 * 5.53407 * 10 9 7 12 12 C 1.38101 * 119.93031 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.07054 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.93093 * 179.97438 * 13 12 11 15 15 N 1.46508 * 109.47002 * 89.99966 * 14 13 12 16 16 C 1.34775 * 119.99830 * 179.97438 * 15 14 13 17 17 O 1.21579 * 119.99994 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99937 * 179.97438 * 16 15 14 19 19 C 1.39385 * 119.99858 * 174.88980 * 18 16 15 20 20 C 1.39016 * 119.68692 * 185.12020 * 19 18 16 21 21 C 1.38394 * 119.13187 * 179.75613 * 20 19 18 22 22 C 1.38780 * 118.50811 * 0.51018 * 21 20 19 23 23 C 1.38241 * 119.30293 * 359.73170 * 22 21 20 24 24 Cl 1.73598 * 119.59018 * 179.97438 * 23 22 21 25 25 N 1.32032 * 120.81194 * 0.02562 * 23 22 21 26 26 C 1.38306 * 120.13979 * 0.24843 * 13 12 11 27 27 C 1.38100 * 120.06691 * 359.45001 * 26 13 12 28 28 H 0.96999 * 120.00361 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.03421 * 0.02562 * 11 10 9 30 30 H 1.08004 * 119.96426 * 179.97438 * 12 11 10 31 31 H 1.09001 * 109.46828 * 209.99237 * 14 13 12 32 32 H 1.08993 * 109.47233 * 330.00015 * 14 13 12 33 33 H 0.97000 * 119.99573 * 359.97438 * 15 14 13 34 34 H 0.97006 * 119.99586 * 354.89406 * 18 16 15 35 35 H 1.07993 * 120.43321 * 359.97438 * 20 19 18 36 36 H 1.07994 * 120.74516 * 180.21544 * 21 20 19 37 37 H 1.08001 * 120.34898 * 179.74930 * 22 21 20 38 38 H 1.08001 * 119.96615 * 179.70121 * 26 13 12 39 39 H 1.07993 * 120.03896 * 180.26869 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0701 -3.5045 -0.1055 11 6 3.4573 -3.4394 -0.0920 12 6 4.2025 -4.5970 -0.2006 13 6 3.5689 -5.8201 -0.3233 14 6 4.3852 -7.0813 -0.4421 15 7 4.6427 -7.6241 0.8941 16 6 5.3588 -8.7572 1.0346 17 8 5.7915 -9.3286 0.0526 18 7 5.5961 -9.2563 2.2639 19 6 6.2438 -10.4824 2.4051 20 6 6.3904 -11.0420 3.6692 21 6 7.0309 -12.2623 3.7956 22 6 7.5143 -12.8785 2.6499 23 6 7.3382 -12.2627 1.4248 24 17 7.9404 -13.0265 -0.0131 25 7 6.7184 -11.1003 1.3351 26 6 2.1876 -5.8878 -0.3427 27 6 1.4367 -4.7345 -0.2282 28 1 -0.4850 0.8400 -0.0004 29 1 3.9527 -2.4844 0.0033 30 1 5.2813 -4.5469 -0.1906 31 1 3.8365 -7.8149 -1.0327 32 1 5.3327 -6.8560 -0.9315 33 1 4.2978 -7.1679 1.6776 34 1 5.3160 -8.7622 3.0503 35 1 6.0064 -10.5329 4.5407 36 1 7.1560 -12.7224 4.7646 37 1 8.0225 -13.8293 2.7146 38 1 1.6958 -6.8440 -0.4434 39 1 0.3582 -4.7883 -0.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183812563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:06 Heat of formation + Delta-G solvation = -5.324235 kcal Electronic energy + Delta-G solvation = -25523.692589 eV Core-core repulsion = 21457.824814 eV Total energy + Delta-G solvation = -4065.867775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92999 -40.90258 -40.34099 -38.54960 -37.63570 -35.98166 -35.62958 -34.28006 -33.46192 -31.87758 -31.70215 -30.48714 -27.68709 -26.40227 -24.83746 -24.24184 -23.64722 -22.22055 -21.94227 -19.92623 -19.76984 -19.23559 -18.76895 -17.41944 -17.00149 -16.88349 -16.58573 -16.36883 -16.28228 -15.88763 -15.68086 -15.51402 -15.44905 -15.20445 -14.84295 -14.39567 -14.26335 -14.13389 -13.70842 -13.41748 -13.11401 -13.03371 -12.95590 -12.55207 -12.36614 -12.27665 -12.25111 -12.11049 -11.63472 -11.61548 -11.20580 -10.81724 -10.79425 -10.28837 -10.11190 -9.81327 -9.26347 -9.02389 -8.48506 -6.16685 -0.06473 0.28279 0.49873 0.57650 0.83813 1.35943 1.42533 1.52730 1.53980 2.06402 2.16841 2.75822 2.79119 3.04032 3.22407 3.49026 3.64974 3.86690 3.89527 4.03084 4.08066 4.17401 4.22183 4.39334 4.45754 4.56685 4.71347 4.80543 4.88600 5.03852 5.14085 5.14275 5.20308 5.26414 5.41143 5.51062 5.66480 5.68728 5.74332 5.75261 6.01250 6.15531 6.61991 6.96393 7.09949 7.53304 7.75454 8.74186 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.001632 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.439810 B =17155.475784 C =17381.451118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.124 3.876 11 C -0.244 4.244 12 C -0.043 4.043 13 C -0.181 4.181 14 C 0.205 3.795 15 N -0.723 5.723 16 C 0.689 3.311 17 O -0.577 6.577 18 N -0.658 5.658 19 C 0.372 3.628 20 C -0.191 4.191 21 C -0.025 4.025 22 C -0.184 4.184 23 C 0.178 3.822 24 Cl -0.048 7.048 25 N -0.522 5.522 26 C -0.042 4.042 27 C -0.204 4.204 28 H 0.273 0.727 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.435 0.565 35 H 0.183 0.817 36 H 0.194 0.806 37 H 0.169 0.831 38 H 0.147 0.853 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.339 -24.081 11.655 30.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.073 3.927 11 C -0.263 4.263 12 C -0.062 4.062 13 C -0.182 4.182 14 C 0.082 3.918 15 N -0.379 5.379 16 C 0.388 3.612 17 O -0.452 6.452 18 N -0.309 5.309 19 C 0.140 3.860 20 C -0.214 4.214 21 C -0.050 4.050 22 C -0.206 4.206 23 C 0.013 3.987 24 Cl -0.019 7.019 25 N -0.239 5.239 26 C -0.060 4.060 27 C -0.224 4.224 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.246 0.754 34 H 0.276 0.724 35 H 0.200 0.800 36 H 0.211 0.789 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.197 -23.992 9.766 30.033 hybrid contribution -0.264 1.222 0.740 1.453 sum 14.934 -22.770 10.506 29.187 Atomic orbital electron populations 1.70177 1.08002 1.28852 1.48574 1.26574 0.96828 1.02743 0.95822 0.84599 0.77902 0.74654 0.79172 1.19038 1.19663 1.17501 1.21827 0.92577 0.81317 1.53182 0.87872 1.83947 1.36068 1.12662 1.80796 1.19997 0.91625 0.87944 0.93181 1.21243 0.92991 1.00061 1.11993 1.20933 0.99799 0.90724 0.94741 1.19436 0.93390 0.93888 1.11491 1.19717 0.98216 0.91143 0.82753 1.45258 1.56746 1.25459 1.10476 1.16237 0.79835 0.81437 0.83647 1.91050 1.55047 1.61043 1.38031 1.42585 1.59609 1.19872 1.08805 1.18322 0.91897 0.86325 0.89491 1.21973 1.04854 0.98603 0.96000 1.21908 0.90922 0.92319 0.99883 1.22103 1.04676 1.03577 0.90267 1.21698 0.96912 0.91325 0.88738 1.98397 1.85273 1.78161 1.40095 1.66573 1.13194 1.10165 1.33953 1.20872 0.93034 0.96979 0.95118 1.20444 1.00092 0.90415 1.11403 0.91811 0.86162 0.84351 0.91256 0.91452 0.75350 0.72430 0.80016 0.78863 0.81364 0.83574 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.09 13.67 21.61 0.30 -54.80 16 2 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 3 Si 1.02 41.66 29.55 68.60 2.03 43.69 16 4 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.41 -23.22 9.49 67.92 0.64 -22.58 16 8 H 0.10 5.29 5.20 -2.91 -0.02 5.27 16 9 O -0.23 -13.24 9.76 -22.70 -0.22 -13.46 16 10 C 0.12 5.79 6.65 22.58 0.15 5.94 16 11 C -0.24 -9.84 9.17 22.39 0.21 -9.64 16 12 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 13 C -0.18 -5.08 5.25 -19.83 -0.10 -5.19 16 14 C 0.21 5.02 5.80 85.63 0.50 5.52 16 15 N -0.72 -15.14 5.55 -482.29 -2.68 -17.82 16 16 C 0.69 17.22 8.52 179.05 1.53 18.74 16 17 O -0.58 -20.24 14.61 -3.96 -0.06 -20.30 16 18 N -0.66 -11.28 5.39 -322.22 -1.74 -13.02 16 19 C 0.37 7.15 7.42 132.91 0.99 8.13 16 20 C -0.19 -1.77 9.94 22.49 0.22 -1.55 16 21 C -0.02 -0.17 10.17 22.44 0.23 0.06 16 22 C -0.18 -2.22 9.87 22.40 0.22 -2.00 16 23 C 0.18 3.81 7.27 84.66 0.62 4.43 16 24 Cl -0.05 -1.04 29.10 -2.72 -0.08 -1.12 16 25 N -0.52 -13.86 7.87 -183.93 -1.45 -15.31 16 26 C -0.04 -1.26 9.69 22.25 0.22 -1.04 16 27 C -0.20 -8.06 9.99 22.39 0.22 -7.83 16 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.12 4.98 5.64 -2.91 -0.02 4.97 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 32 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 33 H 0.41 6.63 8.48 -92.71 -0.79 5.84 16 34 H 0.44 3.49 8.72 -92.70 -0.81 2.68 16 35 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 36 H 0.19 -0.42 8.06 -2.91 -0.02 -0.44 16 37 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 39 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -82.70 362.10 1.96 -80.75 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.46 Total: 20.28 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 6.31 Total: -8.89 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -5.57 Total: -100.95 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.28 Total: -33.76 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -82.70 1.96 -80.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.421 kcal (2) G-P(sol) polarization free energy of solvation -82.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds