Wall clock time and date at job start Wed Apr 1 2020 04:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 C 1.34785 * 134.45494 * 204.64112 * 12 11 9 14 14 O 1.21622 * 119.99630 * 179.86643 * 13 12 11 15 15 C 1.47195 * 119.99877 * 359.87004 * 13 12 11 16 16 C 1.38171 * 126.76916 * 179.97438 * 15 13 12 17 17 C 1.40687 * 105.30076 * 180.02562 * 16 15 13 18 18 C 1.48455 * 126.21395 * 179.97438 * 17 16 15 19 19 C 1.39313 * 120.10495 * 359.72927 * 18 17 16 20 20 C 1.38008 * 119.89282 * 179.74372 * 19 18 17 21 21 C 1.38436 * 120.10193 * 0.52632 * 20 19 18 22 22 Cl 1.73598 * 119.89313 * 179.69960 * 21 20 19 23 23 C 1.38437 * 120.21153 * 359.72839 * 21 20 19 24 24 C 1.38005 * 120.10498 * 0.02562 * 23 21 20 25 25 N 1.31632 * 107.57155 * 0.02562 * 17 16 15 26 26 N 1.28426 * 110.79377 * 359.71629 * 25 17 16 27 27 H 0.97000 * 125.06033 * 180.30444 * 26 25 17 28 28 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 31 31 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 32 32 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 33 33 H 1.08000 * 127.35765 * 0.02562 * 16 15 13 34 34 H 1.08004 * 120.05100 * 359.97438 * 19 18 17 35 35 H 1.07994 * 119.94606 * 180.22735 * 20 19 18 36 36 H 1.08002 * 119.94148 * 180.02562 * 23 21 20 37 37 H 1.08003 * 120.04869 * 180.02562 * 24 23 21 38 38 H 1.08999 * 113.76805 * 221.15228 * 28 12 11 39 39 H 1.09000 * 113.87378 * 89.76768 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 6 6.3443 -2.3564 -1.3989 14 8 6.9089 -3.3107 -0.8992 15 6 7.0282 -1.5499 -2.4228 16 6 8.3029 -1.7491 -2.9173 17 6 8.4972 -0.7278 -3.8652 18 6 9.7189 -0.5077 -4.6794 19 6 10.8160 -1.3542 -4.5362 20 6 11.9475 -1.1488 -5.2991 21 6 11.9974 -0.0970 -6.1978 22 17 13.4264 0.1611 -7.1491 23 6 10.9117 0.7500 -6.3398 24 6 9.7739 0.5495 -5.5849 25 7 7.3994 -0.0022 -3.8983 26 7 6.5260 -0.4590 -3.0750 27 1 5.6423 -0.0843 -2.9355 28 6 4.1313 -2.6024 -0.0480 29 1 -0.4850 0.8401 0.0004 30 1 3.7023 0.5402 1.0280 31 1 3.4726 -1.2571 -2.2148 32 1 4.5870 0.0025 -1.5238 33 1 9.0012 -2.5235 -2.6363 34 1 10.7796 -2.1722 -3.8318 35 1 12.7971 -1.8067 -5.1914 36 1 10.9552 1.5690 -7.0425 37 1 8.9272 1.2107 -5.6968 38 1 4.5862 -2.9145 0.8921 39 1 3.4712 -3.3587 -0.4728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186831343.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:16 Heat of formation + Delta-G solvation = 61.260728 kcal Electronic energy + Delta-G solvation = -26621.346795 eV Core-core repulsion = 22558.366361 eV Total energy + Delta-G solvation = -4062.980434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.66493 -39.92337 -39.38972 -37.79135 -36.78545 -34.74703 -33.13756 -32.72123 -31.61973 -30.99509 -29.90973 -28.89237 -26.11684 -25.71651 -23.87279 -23.48412 -22.27709 -20.82850 -20.36714 -19.79789 -18.02950 -17.52692 -17.31939 -16.56382 -16.38841 -15.91793 -15.76372 -15.57208 -14.95815 -14.82402 -14.27285 -13.99631 -13.86466 -13.83095 -13.72684 -13.43319 -13.29703 -12.96002 -12.55298 -12.40454 -12.06007 -11.98904 -11.93732 -11.52681 -11.24418 -11.15392 -10.96113 -10.79483 -10.32930 -10.14670 -10.11117 -9.57559 -9.38085 -9.28754 -9.21802 -8.94901 -8.44308 -8.35282 -6.58238 -4.66166 0.54260 0.98949 1.23520 1.80785 2.42890 2.64203 2.80812 2.85116 2.94671 3.02164 3.31425 3.54155 3.86142 4.04668 4.31078 4.45180 4.55863 4.57267 4.77198 4.85162 4.98278 5.11512 5.22204 5.25627 5.34455 5.44112 5.64090 5.65770 5.72649 5.84532 5.88831 5.90553 6.09649 6.11256 6.19018 6.26032 6.36056 6.43466 6.79191 6.99960 7.74013 7.84148 7.88893 8.21837 8.30460 8.46341 8.97756 10.53593 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.002172 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.922708 B =12888.012858 C =13790.400431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.081 3.919 3 Si 0.859 3.141 4 H -0.265 1.265 5 H -0.261 1.261 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.094 0.906 9 C 0.202 3.798 10 O -0.551 6.551 11 C 0.045 3.955 12 N -0.632 5.632 13 C 0.603 3.397 14 O -0.534 6.534 15 C -0.014 4.014 16 C -0.146 4.146 17 C 0.053 3.947 18 C 0.009 3.991 19 C -0.089 4.089 20 C -0.108 4.108 21 C -0.036 4.036 22 Cl -0.074 7.074 23 C -0.109 4.109 24 C -0.085 4.085 25 N -0.259 5.259 26 N -0.369 5.369 27 H 0.448 0.552 28 C 0.132 3.868 29 H 0.273 0.727 30 H 0.354 0.646 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.168 0.832 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.082 0.918 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.549 1.600 -11.713 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.125 4.125 3 Si 0.687 3.313 4 H -0.191 1.191 5 H -0.187 1.187 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.112 0.888 9 C 0.161 3.839 10 O -0.362 6.362 11 C -0.078 4.078 12 N -0.366 5.366 13 C 0.391 3.609 14 O -0.411 6.411 15 C -0.142 4.142 16 C -0.174 4.174 17 C -0.103 4.103 18 C 0.007 3.993 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.063 4.063 22 Cl -0.046 7.046 23 C -0.128 4.128 24 C -0.105 4.105 25 N -0.093 5.093 26 N -0.088 5.088 27 H 0.297 0.703 28 C 0.011 3.989 29 H 0.083 0.917 30 H 0.206 0.794 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.185 0.815 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.101 0.899 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.785 1.536 -11.926 22.304 hybrid contribution -0.067 1.139 0.154 1.151 sum 18.718 2.675 -11.772 22.273 Atomic orbital electron populations 1.69844 1.06033 1.27809 1.46781 1.25021 0.94940 0.98970 0.93558 0.87356 0.80061 0.84501 0.79392 1.19084 1.18699 1.20697 1.21190 0.87299 0.95871 1.53336 0.88790 1.20467 0.92811 0.87943 0.82684 1.86488 1.67518 1.25748 1.56466 1.24975 0.89125 0.89389 1.04297 1.50126 1.11870 1.32627 1.41955 1.16559 0.80537 0.83212 0.80638 1.90804 1.65609 1.28675 1.56016 1.21848 0.96572 0.94203 1.01612 1.22053 0.95309 1.01437 0.98646 1.20241 0.93422 0.96117 1.00477 1.17805 0.90593 0.95760 0.95178 1.21109 0.91544 0.99208 0.99052 1.20950 0.98991 0.97111 0.95575 1.21021 0.89310 0.98653 0.97293 1.98372 1.38583 1.96292 1.71318 1.20994 0.91939 0.99453 1.00423 1.21205 0.97840 0.96983 0.94450 1.73262 0.99785 1.23555 1.12740 1.44102 1.15354 1.21463 1.27891 0.70325 1.23368 0.86791 0.97118 0.91587 0.91678 0.79426 0.87752 0.91773 0.81469 0.84347 0.84521 0.84680 0.84265 0.89940 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.98 13.96 55.43 0.77 -22.21 16 2 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.86 17.48 24.31 -169.99 -4.13 13.34 16 4 H -0.26 -5.33 7.05 56.52 0.40 -4.93 16 5 H -0.26 -4.82 5.16 56.52 0.29 -4.53 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.54 -12.83 9.19 -34.44 -0.32 -13.14 16 8 H 0.09 2.41 8.06 -52.49 -0.42 1.98 16 9 C 0.20 4.18 1.06 -90.85 -0.10 4.08 16 10 O -0.55 -11.97 13.35 -35.23 -0.47 -12.44 16 11 C 0.05 0.79 5.87 -2.84 -0.02 0.78 16 12 N -0.63 -11.46 3.61 -179.47 -0.65 -12.11 16 13 C 0.60 11.00 8.04 -12.62 -0.10 10.90 16 14 O -0.53 -11.00 17.64 5.26 0.09 -10.90 16 15 C -0.01 -0.22 7.09 -82.10 -0.58 -0.81 16 16 C -0.15 -2.02 10.18 -38.68 -0.39 -2.41 16 17 C 0.05 0.70 6.99 -82.82 -0.58 0.12 16 18 C 0.01 0.09 5.88 -104.89 -0.62 -0.52 16 19 C -0.09 -0.82 9.58 -39.27 -0.38 -1.20 16 20 C -0.11 -0.90 9.81 -39.59 -0.39 -1.29 16 21 C -0.04 -0.32 6.32 -39.43 -0.25 -0.56 16 22 Cl -0.07 -0.62 28.95 -51.86 -1.50 -2.12 16 23 C -0.11 -0.96 9.81 -39.59 -0.39 -1.35 16 24 C -0.09 -0.85 9.69 -39.27 -0.38 -1.23 16 25 N -0.26 -3.63 11.83 33.41 0.40 -3.24 16 26 N -0.37 -5.27 6.75 33.45 0.23 -5.05 16 27 H 0.45 5.87 5.82 -190.47 -1.11 4.76 16 28 C 0.13 2.49 8.23 -2.97 -0.02 2.46 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.35 7.31 3.57 45.56 0.16 7.48 16 31 H 0.10 1.69 8.09 -51.92 -0.42 1.27 16 32 H 0.06 1.04 5.25 -51.93 -0.27 0.77 16 33 H 0.17 1.99 7.43 -52.49 -0.39 1.60 16 34 H 0.14 1.05 7.10 -52.48 -0.37 0.68 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.14 1.33 7.86 -52.48 -0.41 0.91 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -28.54 346.76 -8.82 -37.36 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -4.17 Total: 14.42 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.61 Total: -2.28 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.75 Total: -42.61 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.38 Total: -23.34 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -4.13 Total: 13.34 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.54 -8.82 -37.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186831343.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.621 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds