Wall clock time and date at job start Wed Apr 1 2020 04:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 C 1.34785 * 134.45494 * 204.64112 * 12 11 9 14 14 O 1.21622 * 119.99630 * 179.86643 * 13 12 11 15 15 C 1.47195 * 119.99877 * 359.87004 * 13 12 11 16 16 C 1.38171 * 126.76916 * 179.97438 * 15 13 12 17 17 C 1.40687 * 105.30076 * 180.02562 * 16 15 13 18 18 C 1.48455 * 126.21395 * 179.97438 * 17 16 15 19 19 C 1.39313 * 120.10495 * 359.72927 * 18 17 16 20 20 C 1.38008 * 119.89282 * 179.74372 * 19 18 17 21 21 C 1.38436 * 120.10193 * 0.52632 * 20 19 18 22 22 Cl 1.73598 * 119.89313 * 179.69960 * 21 20 19 23 23 C 1.38437 * 120.21153 * 359.72839 * 21 20 19 24 24 C 1.38005 * 120.10498 * 0.02562 * 23 21 20 25 25 N 1.31632 * 107.57155 * 0.02562 * 17 16 15 26 26 N 1.28426 * 110.79377 * 359.71629 * 25 17 16 27 27 H 0.97000 * 125.06033 * 180.30444 * 26 25 17 28 28 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 31 31 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 32 32 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 33 33 H 1.08000 * 127.35765 * 0.02562 * 16 15 13 34 34 H 1.08004 * 120.05100 * 359.97438 * 19 18 17 35 35 H 1.07994 * 119.94606 * 180.22735 * 20 19 18 36 36 H 1.08002 * 119.94148 * 180.02562 * 23 21 20 37 37 H 1.08003 * 120.04869 * 180.02562 * 24 23 21 38 38 H 1.08999 * 113.76805 * 221.15228 * 28 12 11 39 39 H 1.09000 * 113.87378 * 89.76768 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 6 6.3443 -2.3564 -1.3989 14 8 6.9089 -3.3107 -0.8992 15 6 7.0282 -1.5499 -2.4228 16 6 8.3029 -1.7491 -2.9173 17 6 8.4972 -0.7278 -3.8652 18 6 9.7189 -0.5077 -4.6794 19 6 10.8160 -1.3542 -4.5362 20 6 11.9475 -1.1488 -5.2991 21 6 11.9974 -0.0970 -6.1978 22 17 13.4264 0.1611 -7.1491 23 6 10.9117 0.7500 -6.3398 24 6 9.7739 0.5495 -5.5849 25 7 7.3994 -0.0022 -3.8983 26 7 6.5260 -0.4590 -3.0750 27 1 5.6423 -0.0843 -2.9355 28 6 4.1313 -2.6024 -0.0480 29 1 -0.4850 0.8401 0.0004 30 1 3.7023 0.5402 1.0280 31 1 3.4726 -1.2571 -2.2148 32 1 4.5870 0.0025 -1.5238 33 1 9.0012 -2.5235 -2.6363 34 1 10.7796 -2.1722 -3.8318 35 1 12.7971 -1.8067 -5.1914 36 1 10.9552 1.5690 -7.0425 37 1 8.9272 1.2107 -5.6968 38 1 4.5862 -2.9145 0.8921 39 1 3.4712 -3.3587 -0.4728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186831343.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:15 Heat of formation + Delta-G solvation = 41.989541 kcal Electronic energy + Delta-G solvation = -26622.182457 eV Core-core repulsion = 22558.366361 eV Total energy + Delta-G solvation = -4063.816096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.74630 -41.39840 -40.11186 -39.30612 -37.44850 -36.36946 -34.58810 -34.06427 -32.54715 -31.95055 -30.92840 -30.25534 -27.64736 -27.33091 -24.80772 -24.39297 -23.32106 -21.92924 -21.57424 -21.12198 -19.63615 -19.00738 -18.25988 -18.01088 -17.58997 -17.13379 -17.05730 -16.34557 -16.24203 -15.86997 -15.64889 -15.28008 -15.10607 -14.92977 -14.68131 -14.49832 -14.47972 -14.35681 -14.13248 -13.90448 -13.08978 -12.83270 -12.75775 -12.71049 -12.64877 -12.49940 -12.14148 -12.00636 -11.75984 -11.60640 -11.20220 -11.00375 -10.99788 -10.64350 -10.43514 -10.04327 -9.83323 -9.25856 -8.45272 -6.58692 -0.23006 0.04059 0.32515 1.14528 1.19931 1.24419 1.37913 1.48560 1.49330 1.63444 1.99547 2.14099 2.71848 2.78021 2.96517 3.17631 3.31483 3.65653 3.66898 3.92171 3.94487 4.07644 4.17823 4.23657 4.31085 4.37877 4.47346 4.53127 4.58908 4.65428 4.71061 4.83029 4.99216 5.04477 5.22500 5.23407 5.32873 5.42057 5.74535 5.75414 6.00852 6.43397 6.52430 6.62018 6.65230 6.83785 7.09627 8.69640 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.002172 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.922708 B =12888.012858 C =13790.400431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.030 3.970 3 Si 0.915 3.085 4 H -0.259 1.259 5 H -0.229 1.229 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.190 3.810 10 O -0.560 6.560 11 C 0.059 3.941 12 N -0.632 5.632 13 C 0.605 3.395 14 O -0.563 6.563 15 C -0.035 4.035 16 C -0.139 4.139 17 C 0.058 3.942 18 C -0.014 4.014 19 C -0.087 4.087 20 C -0.107 4.107 21 C -0.039 4.039 22 Cl -0.069 7.069 23 C -0.111 4.111 24 C -0.090 4.090 25 N -0.263 5.263 26 N -0.367 5.367 27 H 0.451 0.549 28 C 0.130 3.870 29 H 0.274 0.726 30 H 0.358 0.642 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.184 0.816 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.078 0.922 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.286 2.645 -13.079 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.172 4.172 3 Si 0.739 3.261 4 H -0.185 1.185 5 H -0.153 1.153 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.149 3.851 10 O -0.371 6.371 11 C -0.064 4.064 12 N -0.365 5.365 13 C 0.394 3.606 14 O -0.442 6.442 15 C -0.163 4.163 16 C -0.168 4.168 17 C -0.098 4.098 18 C -0.016 4.016 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.066 4.066 22 Cl -0.040 7.040 23 C -0.129 4.129 24 C -0.109 4.109 25 N -0.098 5.098 26 N -0.087 5.087 27 H 0.301 0.699 28 C 0.009 3.991 29 H 0.083 0.917 30 H 0.210 0.790 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.202 0.798 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.097 0.903 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 21.537 2.580 -13.304 25.446 hybrid contribution -0.855 0.738 0.543 1.254 sum 20.682 3.318 -12.761 24.527 Atomic orbital electron populations 1.69988 1.07994 1.28840 1.48845 1.25810 0.95577 1.02756 0.93057 0.86410 0.80092 0.79576 0.79991 1.18497 1.15263 1.20892 1.21294 0.89166 0.94727 1.52816 0.92135 1.20507 0.91057 0.89221 0.84288 1.86484 1.67338 1.26135 1.57154 1.24826 0.88833 0.90354 1.02389 1.50049 1.12019 1.32655 1.41801 1.16805 0.80104 0.83026 0.80643 1.90781 1.66127 1.30054 1.57266 1.21564 0.97324 0.95186 1.02235 1.22351 0.94813 1.01616 0.97995 1.20557 0.93749 0.95357 1.00097 1.17898 0.90473 0.97155 0.96057 1.21299 0.91104 0.99125 0.99161 1.21193 0.99329 0.97118 0.94901 1.21203 0.89490 0.98701 0.97253 1.98378 1.38214 1.96265 1.71157 1.21161 0.91474 0.99872 1.00390 1.21263 0.98326 0.96824 0.94491 1.73271 1.00113 1.23741 1.12639 1.44047 1.15604 1.21166 1.27874 0.69924 1.23365 0.87174 0.96532 0.92037 0.91668 0.78997 0.86323 0.89866 0.79847 0.82876 0.82507 0.83077 0.84235 0.90308 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.85 13.96 21.45 0.30 -49.55 16 2 C 0.03 1.47 5.47 84.66 0.46 1.93 16 3 Si 0.91 35.08 24.31 68.60 1.67 36.75 16 4 H -0.26 -9.71 7.05 99.48 0.70 -9.01 16 5 H -0.23 -7.47 5.16 99.48 0.51 -6.95 16 6 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.54 -26.15 9.19 25.60 0.24 -25.91 16 8 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 9 C 0.19 7.70 1.06 -10.88 -0.01 7.69 16 10 O -0.56 -23.44 13.35 -148.98 -1.99 -25.43 16 11 C 0.06 1.94 5.87 86.44 0.51 2.45 16 12 N -0.63 -22.12 3.61 -843.79 -3.05 -25.17 16 13 C 0.61 21.35 8.04 86.59 0.70 22.04 16 14 O -0.56 -22.78 17.64 -4.10 -0.07 -22.85 16 15 C -0.04 -1.05 7.09 40.73 0.29 -0.76 16 16 C -0.14 -3.57 10.18 22.85 0.23 -3.34 16 17 C 0.06 1.41 6.99 42.50 0.30 1.70 16 18 C -0.01 -0.28 5.88 -20.04 -0.12 -0.39 16 19 C -0.09 -1.37 9.58 22.47 0.22 -1.16 16 20 C -0.11 -1.49 9.81 22.26 0.22 -1.27 16 21 C -0.04 -0.60 6.32 22.36 0.14 -0.45 16 22 Cl -0.07 -0.98 28.95 -2.72 -0.08 -1.06 16 23 C -0.11 -1.68 9.81 22.26 0.22 -1.46 16 24 C -0.09 -1.60 9.69 22.47 0.22 -1.39 16 25 N -0.26 -6.86 11.83 -48.23 -0.57 -7.43 16 26 N -0.37 -9.74 6.75 -48.08 -0.32 -10.07 16 27 H 0.45 10.75 5.82 -220.01 -1.28 9.47 16 28 C 0.13 4.85 8.23 86.49 0.71 5.56 16 29 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.36 13.99 3.57 -74.06 -0.26 13.72 16 31 H 0.12 3.61 8.09 -2.38 -0.02 3.59 16 32 H 0.08 2.44 5.25 -2.39 -0.01 2.43 16 33 H 0.18 3.95 7.43 -2.91 -0.02 3.92 16 34 H 0.15 1.88 7.10 -2.91 -0.02 1.86 16 35 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.14 2.42 7.86 -2.91 -0.02 2.40 16 38 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.11 3.86 8.09 -2.39 -0.02 3.84 16 Total: -1.00 -61.68 346.76 -0.40 -62.08 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.60 Total: 37.49 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 4.31 Total: 5.24 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -3.64 Total: -92.21 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -2.06 Total: -48.28 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 1.67 Total: 36.75 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -61.68 -0.40 -62.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186831343.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.067 kcal (2) G-P(sol) polarization free energy of solvation -61.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds