Wall clock time and date at job start Wed Apr 1 2020 03:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34230 * 116.99659 * 270.00399 * 13 3 2 15 15 O 1.20831 * 120.00023 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00020 * 180.02562 * 14 13 3 17 17 H 1.09005 * 109.46913 * 300.00034 * 16 14 13 18 18 C 1.53004 * 109.46869 * 59.99349 * 16 14 13 19 19 N 1.46495 * 109.47292 * 179.97438 * 16 14 13 20 20 S 1.65608 * 119.99834 * 144.99930 * 19 16 14 21 21 O 1.42098 * 106.39966 * 178.54146 * 20 19 16 22 22 O 1.42098 * 106.40265 * 311.45890 * 20 19 16 23 23 C 1.76196 * 107.21552 * 65.00212 * 20 19 16 24 24 C 1.33390 * 125.20766 * 90.00437 * 23 20 19 25 25 C 1.38419 * 114.92314 * 179.97438 * 24 23 20 26 26 C 1.33386 * 114.92134 * 359.97438 * 25 24 23 27 27 S 1.75882 * 125.20015 * 269.68873 * 23 20 19 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47159 * 60.00572 * 18 16 14 35 35 H 1.09000 * 109.46855 * 180.02562 * 18 16 14 36 36 H 1.08997 * 109.47348 * 300.00195 * 18 16 14 37 37 H 0.97001 * 119.99937 * 325.00236 * 19 16 14 38 38 H 1.08006 * 122.53336 * 359.95013 * 24 23 20 39 39 H 1.08004 * 122.54079 * 180.02562 * 25 24 23 40 40 H 1.08002 * 125.20134 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 8 1.6559 2.0918 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2189 2.7377 0.2651 16 6 0.0073 3.4227 2.5082 17 1 -0.0712 2.6987 3.3193 18 6 1.0139 4.5097 2.8907 19 7 -1.3027 4.0331 2.2692 20 16 -2.4245 4.0892 3.4862 21 8 -3.5581 4.7626 2.9563 22 8 -2.4850 2.7806 4.0368 23 6 -1.7724 5.1306 4.7490 24 6 -1.9558 6.4494 4.8291 25 6 -1.3460 7.0584 5.9123 26 6 -0.6679 6.2341 6.7122 27 16 -0.7865 4.5891 6.1011 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0604 -2.9502 34 1 1.0926 5.2337 2.0797 35 1 0.6776 5.0137 3.7968 36 1 1.9888 4.0558 3.0684 37 1 -1.5132 4.4045 1.3982 38 1 -2.5358 7.0004 4.1034 39 1 -1.4148 8.1204 6.0964 40 1 -0.1315 6.5309 7.6014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188009075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:09 Heat of formation + Delta-G solvation = -129.437650 kcal Electronic energy + Delta-G solvation = -26650.757386 eV Core-core repulsion = 22684.702556 eV Total energy + Delta-G solvation = -3966.054830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.92103 -38.22225 -37.37781 -36.53749 -36.05156 -35.16990 -33.56068 -31.40841 -30.33004 -30.01001 -27.34352 -24.88895 -24.57884 -23.08915 -20.94305 -20.78001 -19.57809 -19.50221 -18.97882 -17.99755 -17.02563 -16.50563 -16.43197 -16.06474 -15.55067 -15.41828 -14.98117 -14.74565 -14.22195 -13.79844 -13.68140 -13.32515 -13.00439 -12.89841 -12.87780 -12.50735 -12.28077 -12.26006 -12.22488 -11.96894 -11.75480 -11.63326 -11.48916 -11.29384 -11.20920 -11.20371 -11.00327 -10.67025 -10.32741 -10.09322 -9.81944 -9.74863 -9.54191 -9.39052 -8.90955 -8.85518 -8.48948 -6.21963 -4.29448 -0.02311 0.25782 1.06497 1.41898 2.08338 2.74396 2.83950 3.22057 3.27604 3.30515 3.49683 3.53777 4.28111 4.30156 4.49149 4.77359 4.88012 4.94995 4.98575 5.07791 5.10587 5.40543 5.42729 5.58739 5.70005 5.85530 5.94773 6.12230 6.23310 6.29841 6.44641 6.79354 6.84748 6.95367 7.14131 7.20369 7.57604 7.70006 7.88423 8.11185 8.53391 8.82088 9.35769 10.84690 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.003014 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.425915 B = 9288.369629 C =10164.325763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.349 6.349 14 C 0.454 3.546 15 O -0.506 6.506 16 C 0.153 3.847 17 H 0.122 0.878 18 C -0.169 4.169 19 N -1.097 6.097 20 S 2.724 3.276 21 O -0.948 6.948 22 O -0.947 6.947 23 C -0.797 4.797 24 C 0.011 3.989 25 C -0.164 4.164 26 C -0.174 4.174 27 S 0.222 5.778 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.109 0.891 33 H 0.267 0.733 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.429 0.571 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 12.459 16.827 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.294 3.706 15 O -0.395 6.395 16 C 0.044 3.956 17 H 0.140 0.860 18 C -0.228 4.228 19 N -0.859 5.859 20 S 2.809 3.191 21 O -0.938 6.938 22 O -0.937 6.937 23 C -0.997 4.997 24 C -0.025 4.025 25 C -0.195 4.195 26 C -0.312 4.312 27 S 0.488 5.512 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.267 0.733 38 H 0.173 0.827 39 H 0.167 0.833 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.939 10.400 17.011 21.461 hybrid contribution 0.757 1.972 -0.716 2.230 sum -7.182 12.372 16.295 21.683 Atomic orbital electron populations 1.21878 0.98302 0.99244 1.00780 1.22037 0.92685 0.99268 1.03492 1.20749 0.95084 0.88818 0.78401 0.93385 1.21023 0.89532 1.39161 1.06292 0.91251 1.24888 0.99244 0.94745 0.95060 1.69890 1.35409 1.37680 1.09455 0.86278 0.83850 0.78676 0.77344 1.20340 1.21006 1.19646 1.86464 1.33449 1.62133 1.44444 1.22959 0.81339 0.77261 0.89012 1.90615 1.55339 1.58208 1.35332 1.20285 0.83293 0.95830 0.96172 0.86015 1.22316 0.99658 0.98366 1.02415 1.55355 1.28169 1.74290 1.28114 1.01136 0.72208 0.73496 0.72278 1.93607 1.45914 1.76166 1.78150 1.93625 1.85513 1.35606 1.78954 1.35983 1.25153 1.14220 1.24384 1.20063 0.94077 0.91432 0.96923 1.20433 1.01197 1.01896 0.96008 1.26301 1.03469 0.97244 1.04222 1.84412 1.44767 1.06303 1.15689 0.94660 0.92806 0.94876 0.93822 0.87271 0.92342 0.90985 0.91468 0.89018 0.73337 0.82687 0.83278 0.80894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.57 37.16 0.32 -2.86 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.67 2.25 -27.88 -0.06 5.61 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.06 8.90 -34.44 -0.31 -14.37 16 6 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.49 11.29 55.43 0.63 -23.87 16 9 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 O -0.35 -7.75 9.71 -39.26 -0.38 -8.14 16 14 C 0.45 8.81 5.78 36.01 0.21 9.02 16 15 O -0.51 -10.93 13.13 -18.75 -0.25 -11.18 16 16 C 0.15 2.17 3.42 -69.08 -0.24 1.93 16 17 H 0.12 1.58 7.50 -51.93 -0.39 1.19 16 18 C -0.17 -1.93 9.45 37.16 0.35 -1.58 16 19 N -1.10 -14.15 5.26 -5.88 -0.03 -14.19 16 20 S 2.72 34.62 5.86 -107.50 -0.63 33.99 16 21 O -0.95 -13.76 17.80 -57.17 -1.02 -14.77 16 22 O -0.95 -14.59 17.24 -57.17 -0.99 -15.57 16 23 C -0.80 -8.06 5.54 29.04 0.16 -7.90 16 24 C 0.01 0.09 9.84 -41.21 -0.41 -0.32 16 25 C -0.16 -1.10 10.18 -41.21 -0.42 -1.52 16 26 C -0.17 -1.13 11.23 29.04 0.33 -0.80 16 27 S 0.22 1.96 22.34 -107.50 -2.40 -0.44 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.23 7.80 -51.93 -0.40 0.82 16 30 H 0.03 0.70 6.06 -51.93 -0.31 0.39 16 31 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.61 6.13 -51.93 -0.32 0.29 16 36 H 0.09 1.07 8.11 -51.93 -0.42 0.64 16 37 H 0.43 5.33 8.21 -34.48 -0.28 5.05 16 38 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.17 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -33.06 361.07 -9.85 -42.91 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.89 Total: 5.04 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -0.31 Total: -14.68 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.60 Total: -38.05 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -2.63 Total: -49.66 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 36.58 SS G_CDS: -3.03 Total: 33.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.06 -9.85 -42.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188009075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.529 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds