Wall clock time and date at job start Wed Apr 1 2020 03:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34230 * 116.99659 * 270.00399 * 13 3 2 15 15 O 1.20831 * 120.00023 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00020 * 180.02562 * 14 13 3 17 17 H 1.09005 * 109.46913 * 300.00034 * 16 14 13 18 18 C 1.53004 * 109.46869 * 59.99349 * 16 14 13 19 19 N 1.46495 * 109.47292 * 179.97438 * 16 14 13 20 20 S 1.65608 * 119.99834 * 144.99930 * 19 16 14 21 21 O 1.42098 * 106.39966 * 178.54146 * 20 19 16 22 22 O 1.42098 * 106.40265 * 311.45890 * 20 19 16 23 23 C 1.76196 * 107.21552 * 65.00212 * 20 19 16 24 24 C 1.33390 * 125.20766 * 90.00437 * 23 20 19 25 25 C 1.38419 * 114.92314 * 179.97438 * 24 23 20 26 26 C 1.33386 * 114.92134 * 359.97438 * 25 24 23 27 27 S 1.75882 * 125.20015 * 269.68873 * 23 20 19 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47159 * 60.00572 * 18 16 14 35 35 H 1.09000 * 109.46855 * 180.02562 * 18 16 14 36 36 H 1.08997 * 109.47348 * 300.00195 * 18 16 14 37 37 H 0.97001 * 119.99937 * 325.00236 * 19 16 14 38 38 H 1.08006 * 122.53336 * 359.95013 * 24 23 20 39 39 H 1.08004 * 122.54079 * 180.02562 * 25 24 23 40 40 H 1.08002 * 125.20134 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 8 1.6559 2.0918 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2189 2.7377 0.2651 16 6 0.0073 3.4227 2.5082 17 1 -0.0712 2.6987 3.3193 18 6 1.0139 4.5097 2.8907 19 7 -1.3027 4.0331 2.2692 20 16 -2.4245 4.0892 3.4862 21 8 -3.5581 4.7626 2.9563 22 8 -2.4850 2.7806 4.0368 23 6 -1.7724 5.1306 4.7490 24 6 -1.9558 6.4494 4.8291 25 6 -1.3460 7.0584 5.9123 26 6 -0.6679 6.2341 6.7122 27 16 -0.7865 4.5891 6.1011 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0604 -2.9502 34 1 1.0926 5.2337 2.0797 35 1 0.6776 5.0137 3.7968 36 1 1.9888 4.0558 3.0684 37 1 -1.5132 4.4045 1.3982 38 1 -2.5358 7.0004 4.1034 39 1 -1.4148 8.1204 6.0964 40 1 -0.1315 6.5309 7.6014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188009075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:09 Heat of formation + Delta-G solvation = -152.358244 kcal Electronic energy + Delta-G solvation = -26651.751298 eV Core-core repulsion = 22684.702556 eV Total energy + Delta-G solvation = -3967.048742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.56126 -38.87000 -38.45254 -38.06260 -37.14938 -36.58141 -35.50096 -33.35518 -31.21513 -30.85232 -29.29038 -26.10819 -25.40861 -24.90603 -22.56601 -21.58669 -21.31964 -20.28433 -19.88022 -19.25865 -18.66811 -18.12766 -17.73394 -17.12607 -16.95270 -16.72449 -16.39918 -15.78057 -15.53267 -15.11571 -14.77620 -14.55400 -14.37436 -13.93408 -13.87496 -13.58790 -13.48121 -13.39583 -13.35252 -13.32263 -13.28181 -13.10322 -13.01564 -12.80619 -12.72394 -12.57674 -12.51096 -12.13114 -11.82248 -11.76153 -11.47111 -11.31574 -10.90105 -10.81873 -10.50424 -10.34206 -9.54291 -8.25170 -6.41669 -0.90794 -0.47479 0.39375 0.84978 1.26445 1.43849 1.46005 1.48220 1.56805 1.73053 2.06009 2.42461 2.54807 3.04935 3.28432 3.57940 3.83302 3.90907 4.05590 4.18736 4.35217 4.37403 4.39246 4.44464 4.54792 4.69787 4.84390 4.88787 4.89488 5.06311 5.08940 5.18572 5.20668 5.33376 5.36241 5.53483 5.67587 5.75770 5.97295 6.12213 6.62364 6.93663 7.29268 8.81477 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.003014 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.425915 B = 9288.369629 C =10164.325763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.132 4.132 3 C 0.225 3.775 4 H 0.010 0.990 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.263 1.263 13 O -0.353 6.353 14 C 0.446 3.554 15 O -0.532 6.532 16 C 0.162 3.838 17 H 0.136 0.864 18 C -0.164 4.164 19 N -1.098 6.098 20 S 2.738 3.262 21 O -0.971 6.971 22 O -0.980 6.980 23 C -0.817 4.817 24 C 0.020 3.980 25 C -0.170 4.170 26 C -0.150 4.150 27 S 0.194 5.806 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.269 0.731 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.430 0.570 38 H 0.167 0.833 39 H 0.180 0.820 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.618 14.238 19.101 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.170 4.170 3 C 0.172 3.828 4 H 0.028 0.972 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.187 1.187 13 O -0.269 6.269 14 C 0.289 3.711 15 O -0.422 6.422 16 C 0.053 3.947 17 H 0.153 0.847 18 C -0.222 4.222 19 N -0.860 5.860 20 S 2.828 3.172 21 O -0.962 6.962 22 O -0.971 6.971 23 C -1.022 5.022 24 C -0.017 4.017 25 C -0.200 4.200 26 C -0.287 4.287 27 S 0.459 5.541 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.267 0.733 38 H 0.184 0.816 39 H 0.198 0.802 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.963 12.162 19.267 23.824 hybrid contribution 0.375 1.539 -1.340 2.075 sum -6.588 13.701 17.926 23.505 Atomic orbital electron populations 1.21747 0.96592 1.00627 1.00081 1.21898 0.94167 0.98413 1.02494 1.20418 0.94674 0.89116 0.78585 0.97176 1.21328 0.90335 1.39835 1.06862 0.91134 1.25794 1.04090 0.93970 0.94442 1.70019 1.37399 1.38013 1.09890 0.85220 0.77876 0.79136 0.77419 1.19431 1.20653 1.18729 1.86448 1.35174 1.62652 1.42631 1.24045 0.80054 0.76470 0.90579 1.90600 1.55699 1.58971 1.36937 1.20383 0.84319 0.96661 0.93322 0.84688 1.22338 0.98765 0.97471 1.03660 1.55335 1.27691 1.74306 1.28642 1.00277 0.71770 0.72978 0.72186 1.93570 1.47194 1.76445 1.78983 1.93577 1.86058 1.38000 1.79420 1.35363 1.27844 1.14496 1.24477 1.20440 0.93018 0.90805 0.97408 1.20741 1.00685 1.03434 0.95157 1.26729 1.02245 0.95198 1.04575 1.84564 1.45024 1.08711 1.15827 0.92170 0.94401 0.94587 0.93388 0.89489 0.92138 0.90894 0.88639 0.89017 0.73254 0.81587 0.80234 0.77594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.57 71.98 0.62 -5.33 16 2 C -0.13 -6.59 5.49 30.60 0.17 -6.42 16 3 C 0.23 11.91 2.25 29.85 0.07 11.98 16 4 H 0.01 0.62 7.16 -2.39 -0.02 0.60 16 5 C -0.55 -29.91 8.90 25.60 0.23 -29.69 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.92 -51.61 11.29 21.45 0.24 -51.37 16 9 Si 0.98 41.82 29.54 68.60 2.03 43.85 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 O -0.35 -16.02 9.71 -51.41 -0.50 -16.52 16 14 C 0.45 17.67 5.78 71.24 0.41 18.08 16 15 O -0.53 -23.83 13.13 21.95 0.29 -23.54 16 16 C 0.16 4.54 3.42 44.25 0.15 4.69 16 17 H 0.14 3.44 7.50 -2.38 -0.02 3.42 16 18 C -0.16 -3.53 9.45 71.98 0.68 -2.85 16 19 N -1.10 -28.36 5.26 -172.52 -0.91 -29.27 16 20 S 2.74 69.27 5.86 -56.49 -0.33 68.94 16 21 O -0.97 -28.29 17.80 -128.00 -2.28 -30.57 16 22 O -0.98 -30.56 17.24 -128.00 -2.21 -32.77 16 23 C -0.82 -15.22 5.54 66.72 0.37 -14.86 16 24 C 0.02 0.28 9.84 21.22 0.21 0.49 16 25 C -0.17 -1.58 10.18 21.21 0.22 -1.36 16 26 C -0.15 -1.33 11.23 66.72 0.75 -0.58 16 27 S 0.19 3.00 22.34 -56.49 -1.26 1.74 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.77 7.80 -2.39 -0.02 1.76 16 30 H 0.04 1.55 6.06 -2.38 -0.01 1.53 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 4.76 5.95 -2.39 -0.01 4.75 16 33 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.53 6.13 -2.39 -0.01 1.51 16 36 H 0.09 2.01 8.11 -2.39 -0.02 1.99 16 37 H 0.43 10.92 8.21 -96.74 -0.79 10.12 16 38 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 40 H 0.21 0.42 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -73.25 361.07 -0.33 -73.58 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.29 Total: 20.42 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 4.31 Total: -24.50 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -0.67 Total: -80.63 kcal Atomic # 8 Polarization: -98.70 SS G_CDS: -4.70 Total: -103.39 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 72.27 SS G_CDS: -1.59 Total: 70.68 kcal Total: -73.25 -0.33 -73.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188009075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.782 kcal (2) G-P(sol) polarization free energy of solvation -73.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds