Wall clock time and date at job start Wed Apr 1 2020 03:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 C 1.50703 * 109.47084 * 175.00085 * 3 2 1 6 6 H 1.08005 * 119.99876 * 119.99791 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31514 * 120.00287 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47245 * 60.00330 * 9 7 5 11 11 H 1.48506 * 109.47061 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47180 * 300.00093 * 9 7 5 13 13 O 1.45206 * 109.46989 * 295.00011 * 3 2 1 14 14 C 1.34222 * 117.00150 * 90.00001 * 13 3 2 15 15 O 1.20828 * 119.99743 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00425 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47192 * 59.99797 * 16 14 13 18 18 C 1.53005 * 109.46739 * 300.00279 * 16 14 13 19 19 N 1.46498 * 109.47486 * 180.02562 * 16 14 13 20 20 S 1.65597 * 119.99823 * 214.99837 * 19 16 14 21 21 O 1.42108 * 106.40037 * 178.53938 * 20 19 16 22 22 O 1.42097 * 106.40672 * 311.45785 * 20 19 16 23 23 C 1.76195 * 107.21907 * 65.00183 * 20 19 16 24 24 C 1.33392 * 125.20248 * 89.99736 * 23 20 19 25 25 C 1.38428 * 114.92206 * 179.97438 * 24 23 20 26 26 C 1.33395 * 114.91876 * 0.02562 * 25 24 23 27 27 S 1.75883 * 109.59344 * 359.75502 * 26 25 24 28 28 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 29 29 H 1.09000 * 109.47312 * 60.00379 * 1 2 3 30 30 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47011 * 239.99593 * 2 1 3 32 32 H 1.09000 * 109.46863 * 119.99909 * 2 1 3 33 33 H 0.96996 * 120.00180 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47639 * 60.00073 * 18 16 14 35 35 H 1.09004 * 109.46785 * 179.97438 * 18 16 14 36 36 H 1.08997 * 109.47154 * 299.99273 * 18 16 14 37 37 H 0.97000 * 119.99789 * 35.00329 * 19 16 14 38 38 H 1.08001 * 122.54064 * 359.95714 * 24 23 20 39 39 H 1.07998 * 122.54225 * 180.02562 * 25 24 23 40 40 H 1.07996 * 125.20013 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8802 1.3811 10 1 6.5005 2.2801 1.3807 11 1 6.3978 0.2169 2.6504 12 1 6.5966 0.1453 0.2342 13 8 1.6558 2.0916 -1.2408 14 6 0.4727 2.7253 -1.2560 15 8 -0.2189 2.7376 -0.2653 16 6 0.0073 3.4224 -2.5084 17 1 -0.0713 2.6984 -3.3194 18 6 1.0139 4.5094 -2.8910 19 7 -1.3028 4.0329 -2.2695 20 16 -2.4245 4.0889 -3.4865 21 8 -3.5831 4.7008 -2.9364 22 8 -1.7496 4.5914 -4.6315 23 6 -2.8706 2.4261 -3.8615 24 6 -3.8648 1.7482 -3.2860 25 6 -4.0288 0.4522 -3.7439 26 6 -3.1673 0.0775 -4.6909 27 16 -2.0773 1.4084 -5.0568 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0610 2.9498 34 1 1.9888 4.0556 -3.0687 35 1 0.6775 5.0134 -3.7971 36 1 1.0924 5.2335 -2.0800 37 1 -1.5132 4.4044 -1.3985 38 1 -4.4940 2.1778 -2.5205 39 1 -4.7960 -0.2057 -3.3633 40 1 -3.1455 -0.8931 -5.1639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188009099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:12 Heat of formation + Delta-G solvation = -130.719586 kcal Electronic energy + Delta-G solvation = -26939.619815 eV Core-core repulsion = 22973.509396 eV Total energy + Delta-G solvation = -3966.110419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95541 -38.11168 -37.36150 -36.54983 -36.04717 -35.16374 -33.59663 -31.46140 -30.18335 -30.02101 -27.37769 -24.77659 -24.57661 -23.13250 -20.99531 -20.73858 -19.61570 -19.41952 -18.90635 -17.93705 -17.10318 -16.54927 -16.38911 -16.15070 -15.48908 -15.27005 -15.04368 -14.73355 -14.23372 -13.66660 -13.54016 -13.22999 -13.05420 -12.92871 -12.81052 -12.52939 -12.34801 -12.23356 -12.15545 -11.85084 -11.73295 -11.65906 -11.54288 -11.30020 -11.25759 -11.13092 -11.00055 -10.73569 -10.35493 -10.13238 -9.87073 -9.64971 -9.56660 -9.42575 -8.89893 -8.82810 -8.51543 -6.24274 -4.31834 0.04777 0.33567 1.15555 1.49960 2.19477 2.70852 2.79254 3.22561 3.26638 3.28295 3.46119 3.59477 4.27222 4.30862 4.60054 4.69712 4.96968 5.02494 5.05596 5.07875 5.15108 5.51012 5.51709 5.69690 5.84346 5.96079 6.00047 6.13446 6.19688 6.26358 6.36471 6.76558 6.79147 6.87169 7.07395 7.14356 7.54205 7.65284 7.84608 8.07607 8.50095 8.79383 9.33653 10.82351 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.003366 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.024940 B = 8315.837159 C = 9007.576229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.349 6.349 14 C 0.450 3.550 15 O -0.506 6.506 16 C 0.160 3.840 17 H 0.110 0.890 18 C -0.166 4.166 19 N -1.095 6.095 20 S 2.724 3.276 21 O -0.950 6.950 22 O -0.946 6.946 23 C -0.801 4.801 24 C 0.015 3.985 25 C -0.164 4.164 26 C -0.170 4.170 27 S 0.214 5.786 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.110 0.890 33 H 0.267 0.733 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.429 0.571 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.203 1.276 -13.118 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 O -0.264 6.264 14 C 0.290 3.710 15 O -0.396 6.396 16 C 0.051 3.949 17 H 0.128 0.872 18 C -0.225 4.225 19 N -0.858 5.858 20 S 2.809 3.191 21 O -0.940 6.940 22 O -0.936 6.936 23 C -1.001 5.001 24 C -0.021 4.021 25 C -0.195 4.195 26 C -0.308 4.308 27 S 0.479 5.521 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.267 0.733 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.388 1.982 -14.207 18.315 hybrid contribution -0.490 -1.201 1.787 2.208 sum -11.878 0.781 -12.420 17.203 Atomic orbital electron populations 1.21862 0.98437 0.99013 1.00674 1.22033 0.92547 0.99365 1.03480 1.20735 0.95131 0.88721 0.78438 0.93393 1.20991 0.89524 1.39234 1.06344 0.91251 1.24875 0.99260 0.94676 0.95024 1.69871 1.35543 1.37656 1.09468 0.86338 0.83797 0.78537 0.77495 1.19951 1.21051 1.19906 1.86471 1.33480 1.62093 1.44390 1.23125 0.81379 0.77245 0.89253 1.90610 1.55428 1.58175 1.35344 1.20233 0.83745 0.95871 0.95088 0.87243 1.22257 0.99025 0.98084 1.03131 1.55454 1.25354 1.74013 1.30962 1.01183 0.72582 0.72362 0.73009 1.93606 1.48046 1.73593 1.78752 1.93615 1.74510 1.76525 1.48976 1.35925 1.15775 1.31020 1.17419 1.20079 0.93172 0.92885 0.95961 1.20452 1.02582 0.96784 0.99659 1.26282 0.99471 1.03392 1.01646 1.84267 1.31907 1.01381 1.34548 0.92780 0.95070 0.94841 0.93901 0.87243 0.92285 0.89313 0.89965 0.91183 0.73342 0.82663 0.83166 0.80813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.57 37.16 0.32 -2.65 16 2 C -0.14 -3.22 5.49 -26.73 -0.15 -3.37 16 3 C 0.22 5.59 2.25 -27.88 -0.06 5.53 16 4 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 5 C -0.52 -13.97 8.90 -34.44 -0.31 -14.28 16 6 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.25 11.29 55.43 0.63 -23.62 16 9 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 O -0.35 -7.62 9.71 -39.24 -0.38 -8.01 16 14 C 0.45 8.51 5.78 36.00 0.21 8.72 16 15 O -0.51 -10.57 13.13 -18.75 -0.25 -10.82 16 16 C 0.16 2.28 3.29 -69.08 -0.23 2.06 16 17 H 0.11 1.38 7.63 -51.93 -0.40 0.98 16 18 C -0.17 -2.12 9.45 37.16 0.35 -1.77 16 19 N -1.10 -14.20 5.26 -5.88 -0.03 -14.24 16 20 S 2.72 34.72 5.79 -107.50 -0.62 34.10 16 21 O -0.95 -13.85 17.80 -57.17 -1.02 -14.87 16 22 O -0.95 -13.35 17.17 -57.17 -0.98 -14.33 16 23 C -0.80 -9.46 6.41 29.04 0.19 -9.28 16 24 C 0.01 0.16 9.84 -41.21 -0.41 -0.25 16 25 C -0.16 -1.49 10.18 -41.20 -0.42 -1.91 16 26 C -0.17 -1.48 11.23 29.04 0.33 -1.15 16 27 S 0.21 2.24 22.99 -107.50 -2.47 -0.23 16 28 H 0.05 1.18 7.80 -51.93 -0.40 0.78 16 29 H 0.03 0.61 6.06 -51.93 -0.31 0.30 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.11 2.83 5.95 -51.93 -0.31 2.53 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 35 H 0.08 0.94 7.64 -51.93 -0.40 0.54 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.43 5.34 8.21 -34.47 -0.28 5.06 16 38 H 0.16 1.44 8.05 -52.49 -0.42 1.02 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -32.00 363.94 -9.91 -41.92 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.98 Total: 6.02 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.27 Total: -16.76 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.59 Total: -37.86 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -2.63 Total: -48.03 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 36.96 SS G_CDS: -3.09 Total: 33.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.00 -9.91 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188009099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.803 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds