Wall clock time and date at job start Wed Apr 1 2020 03:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 C 1.50703 * 109.47084 * 175.00085 * 3 2 1 6 6 H 1.08005 * 119.99876 * 119.99791 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31514 * 120.00287 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47245 * 60.00330 * 9 7 5 11 11 H 1.48506 * 109.47061 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47180 * 300.00093 * 9 7 5 13 13 O 1.45206 * 109.46989 * 295.00011 * 3 2 1 14 14 C 1.34222 * 117.00150 * 90.00001 * 13 3 2 15 15 O 1.20828 * 119.99743 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00425 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47192 * 59.99797 * 16 14 13 18 18 C 1.53005 * 109.46739 * 300.00279 * 16 14 13 19 19 N 1.46498 * 109.47486 * 180.02562 * 16 14 13 20 20 S 1.65597 * 119.99823 * 214.99837 * 19 16 14 21 21 O 1.42108 * 106.40037 * 178.53938 * 20 19 16 22 22 O 1.42097 * 106.40672 * 311.45785 * 20 19 16 23 23 C 1.76195 * 107.21907 * 65.00183 * 20 19 16 24 24 C 1.33392 * 125.20248 * 89.99736 * 23 20 19 25 25 C 1.38428 * 114.92206 * 179.97438 * 24 23 20 26 26 C 1.33395 * 114.91876 * 0.02562 * 25 24 23 27 27 S 1.75883 * 109.59344 * 359.75502 * 26 25 24 28 28 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 29 29 H 1.09000 * 109.47312 * 60.00379 * 1 2 3 30 30 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47011 * 239.99593 * 2 1 3 32 32 H 1.09000 * 109.46863 * 119.99909 * 2 1 3 33 33 H 0.96996 * 120.00180 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47639 * 60.00073 * 18 16 14 35 35 H 1.09004 * 109.46785 * 179.97438 * 18 16 14 36 36 H 1.08997 * 109.47154 * 299.99273 * 18 16 14 37 37 H 0.97000 * 119.99789 * 35.00329 * 19 16 14 38 38 H 1.08001 * 122.54064 * 359.95714 * 24 23 20 39 39 H 1.07998 * 122.54225 * 180.02562 * 25 24 23 40 40 H 1.07996 * 125.20013 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8802 1.3811 10 1 6.5005 2.2801 1.3807 11 1 6.3978 0.2169 2.6504 12 1 6.5966 0.1453 0.2342 13 8 1.6558 2.0916 -1.2408 14 6 0.4727 2.7253 -1.2560 15 8 -0.2189 2.7376 -0.2653 16 6 0.0073 3.4224 -2.5084 17 1 -0.0713 2.6984 -3.3194 18 6 1.0139 4.5094 -2.8910 19 7 -1.3028 4.0329 -2.2695 20 16 -2.4245 4.0889 -3.4865 21 8 -3.5831 4.7008 -2.9364 22 8 -1.7496 4.5914 -4.6315 23 6 -2.8706 2.4261 -3.8615 24 6 -3.8648 1.7482 -3.2860 25 6 -4.0288 0.4522 -3.7439 26 6 -3.1673 0.0775 -4.6909 27 16 -2.0773 1.4084 -5.0568 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0610 2.9498 34 1 1.9888 4.0556 -3.0687 35 1 0.6775 5.0134 -3.7971 36 1 1.0924 5.2335 -2.0800 37 1 -1.5132 4.4044 -1.3985 38 1 -4.4940 2.1778 -2.5205 39 1 -4.7960 -0.2057 -3.3633 40 1 -3.1455 -0.8931 -5.1639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188009099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:11 Heat of formation + Delta-G solvation = -152.155594 kcal Electronic energy + Delta-G solvation = -26940.549350 eV Core-core repulsion = 22973.509396 eV Total energy + Delta-G solvation = -3967.039954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55956 -38.89751 -38.43639 -38.06085 -37.13162 -36.55264 -35.49719 -33.34692 -31.16955 -30.93913 -29.28024 -26.08270 -25.47747 -24.90648 -22.56879 -21.64395 -21.31093 -20.28708 -19.90408 -19.17370 -18.68054 -18.15086 -17.83006 -17.11125 -17.04526 -16.67058 -16.30650 -15.88129 -15.53607 -15.09959 -14.76523 -14.50043 -14.30913 -13.93869 -13.91454 -13.65012 -13.60133 -13.35824 -13.30119 -13.29758 -13.28440 -13.11230 -12.93257 -12.78293 -12.73274 -12.66085 -12.51382 -12.14554 -11.90366 -11.74576 -11.47486 -11.32325 -10.90786 -10.81006 -10.49858 -10.39280 -9.60766 -8.25210 -6.41395 -0.89307 -0.51112 0.35129 0.76763 1.25965 1.41338 1.45072 1.47007 1.54353 1.64212 2.09409 2.41959 2.53760 3.05073 3.27995 3.53896 3.80083 3.91806 3.99077 4.16945 4.30498 4.37566 4.38690 4.40587 4.56249 4.79237 4.81869 4.85857 4.90257 5.00039 5.09357 5.22079 5.23448 5.26468 5.38220 5.53649 5.68738 5.74433 5.98043 6.12918 6.62250 6.94203 7.29657 8.80963 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.003366 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.024940 B = 8315.837159 C = 9007.576229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.010 0.990 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.976 3.024 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.264 1.264 13 O -0.354 6.354 14 C 0.446 3.554 15 O -0.528 6.528 16 C 0.168 3.832 17 H 0.130 0.870 18 C -0.167 4.167 19 N -1.095 6.095 20 S 2.741 3.259 21 O -0.971 6.971 22 O -0.961 6.961 23 C -0.825 4.825 24 C 0.012 3.988 25 C -0.174 4.174 26 C -0.154 4.154 27 S 0.195 5.805 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.269 0.731 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.430 0.570 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.331 0.271 -14.436 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.028 0.972 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.800 3.200 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.189 1.189 13 O -0.270 6.270 14 C 0.288 3.712 15 O -0.418 6.418 16 C 0.059 3.941 17 H 0.148 0.852 18 C -0.225 4.225 19 N -0.857 5.857 20 S 2.829 3.171 21 O -0.961 6.961 22 O -0.951 6.951 23 C -1.028 5.028 24 C -0.025 4.025 25 C -0.204 4.204 26 C -0.292 4.292 27 S 0.460 5.540 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.181 0.819 39 H 0.195 0.805 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -11.527 1.014 -15.534 19.370 hybrid contribution -0.558 -0.921 2.179 2.431 sum -12.085 0.093 -13.355 18.011 Atomic orbital electron populations 1.21715 0.96279 1.00550 1.00156 1.21875 0.94432 0.98116 1.02424 1.20409 0.94525 0.89269 0.78547 0.97230 1.21307 0.90539 1.39865 1.06857 0.91336 1.25728 1.03850 0.93961 0.94451 1.69997 1.37381 1.37969 1.09847 0.85328 0.78163 0.78733 0.77777 1.19464 1.20554 1.18889 1.86455 1.35218 1.62662 1.42622 1.24026 0.80117 0.76468 0.90587 1.90601 1.55706 1.58768 1.36701 1.20311 0.84495 0.96430 0.92876 0.85238 1.22315 0.98696 0.97628 1.03895 1.55442 1.25077 1.73937 1.31198 1.00431 0.71850 0.72519 0.72308 1.93575 1.48716 1.74697 1.79132 1.93588 1.74754 1.77456 1.49336 1.35663 1.17291 1.30687 1.19124 1.20435 0.92625 0.93677 0.95731 1.20764 1.03444 0.96421 0.99773 1.26720 0.97872 1.03794 1.00791 1.84312 1.32825 1.02324 1.34549 0.94556 0.94238 0.92196 0.93406 0.89650 0.92138 0.89123 0.88211 0.91176 0.73195 0.81890 0.80457 0.77592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.57 71.98 0.62 -4.71 16 2 C -0.13 -6.22 5.49 30.59 0.17 -6.05 16 3 C 0.23 11.61 2.25 29.85 0.07 11.68 16 4 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 5 C -0.55 -29.67 8.90 25.60 0.23 -29.45 16 6 H 0.07 3.62 7.81 -2.91 -0.02 3.59 16 7 C 0.02 1.07 5.29 84.65 0.45 1.51 16 8 N -0.91 -50.68 11.29 21.45 0.24 -50.44 16 9 Si 0.98 41.51 29.54 68.60 2.03 43.54 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 13 O -0.35 -15.58 9.71 -51.34 -0.50 -16.08 16 14 C 0.45 16.90 5.78 71.24 0.41 17.31 16 15 O -0.53 -22.38 13.13 21.96 0.29 -22.09 16 16 C 0.17 4.67 3.29 44.25 0.15 4.82 16 17 H 0.13 3.09 7.63 -2.39 -0.02 3.07 16 18 C -0.17 -4.08 9.45 71.98 0.68 -3.40 16 19 N -1.10 -27.85 5.26 -172.52 -0.91 -28.76 16 20 S 2.74 68.19 5.79 -56.49 -0.33 67.86 16 21 O -0.97 -28.05 17.80 -128.00 -2.28 -30.33 16 22 O -0.96 -26.34 17.17 -128.00 -2.20 -28.53 16 23 C -0.82 -18.48 6.41 66.72 0.43 -18.05 16 24 C 0.01 0.23 9.84 21.22 0.21 0.44 16 25 C -0.17 -2.67 10.18 21.22 0.22 -2.45 16 26 C -0.15 -2.20 11.23 66.72 0.75 -1.45 16 27 S 0.19 3.75 22.99 -56.49 -1.30 2.45 16 28 H 0.04 1.59 7.80 -2.39 -0.02 1.57 16 29 H 0.04 1.52 6.06 -2.39 -0.01 1.51 16 30 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 4.51 5.95 -2.39 -0.01 4.50 16 33 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.09 2.20 8.11 -2.39 -0.02 2.18 16 35 H 0.10 2.12 7.64 -2.39 -0.02 2.10 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 37 H 0.43 10.73 8.21 -96.74 -0.79 9.94 16 38 H 0.16 2.82 8.05 -2.91 -0.02 2.79 16 39 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -69.15 363.94 -0.30 -69.45 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.28 Total: 22.74 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 4.37 Total: -29.81 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -0.67 Total: -79.20 kcal Atomic # 8 Polarization: -92.34 SS G_CDS: -4.69 Total: -97.03 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 71.93 SS G_CDS: -1.63 Total: 70.31 kcal Total: -69.15 -0.30 -69.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188009099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.703 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds