Wall clock time and date at job start Wed Apr 1 2020 03:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46719 * 2 1 4 4 H 1.08997 * 109.47161 * 54.99931 * 3 2 1 5 5 C 1.50706 * 109.46835 * 175.00028 * 3 2 1 6 6 H 1.07998 * 119.99604 * 119.99819 * 5 3 2 7 7 C 1.37872 * 119.99932 * 299.99681 * 5 3 2 8 8 N 1.31517 * 120.00240 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00146 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47158 * 89.99750 * 9 7 5 11 11 H 1.48494 * 109.47303 * 210.00074 * 9 7 5 12 12 H 1.48498 * 109.46895 * 330.00406 * 9 7 5 13 13 O 1.45196 * 109.46901 * 294.99755 * 3 2 1 14 14 C 1.34234 * 116.99938 * 90.00275 * 13 3 2 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 3 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.47267 * 179.97438 * 17 16 14 19 19 S 1.65605 * 120.00090 * 164.99957 * 18 17 16 20 20 O 1.42097 * 106.40225 * 178.53874 * 19 18 17 21 21 O 1.42099 * 106.39815 * 311.46203 * 19 18 17 22 22 C 1.76203 * 107.21564 * 64.99960 * 19 18 17 23 23 C 1.33388 * 125.20136 * 90.00693 * 22 19 18 24 24 C 1.38419 * 114.91869 * 179.97438 * 23 22 19 25 25 C 1.33387 * 114.92267 * 359.97438 * 24 23 22 26 26 S 1.75878 * 125.20157 * 269.69119 * 22 19 18 27 27 H 1.09004 * 109.47094 * 300.00062 * 1 2 3 28 28 H 1.08994 * 109.47228 * 60.00506 * 1 2 3 29 29 H 1.09006 * 109.46744 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47481 * 239.99877 * 2 1 3 31 31 H 1.09003 * 109.46982 * 119.99347 * 2 1 3 32 32 H 0.96995 * 120.00188 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 34 34 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 35 35 H 1.09004 * 109.47330 * 299.99977 * 17 16 14 36 36 H 1.09005 * 109.47124 * 59.99773 * 17 16 14 37 37 H 0.97000 * 120.00235 * 344.99631 * 18 17 16 38 38 H 1.08004 * 122.54092 * 359.94299 * 23 22 19 39 39 H 1.08009 * 122.53792 * 180.02562 * 24 23 22 40 40 H 1.08008 * 125.20327 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8802 1.3812 10 1 6.4428 2.1132 2.0836 11 1 6.4390 -0.3108 2.1546 12 1 6.6130 0.8397 0.0270 13 8 1.6558 2.0916 -1.2407 14 6 0.4726 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2653 16 6 0.0073 3.4224 -2.5085 17 6 -1.3609 4.0600 -2.2590 18 7 -1.8130 4.7381 -3.4763 19 16 -3.3974 5.1946 -3.6301 20 8 -3.5066 5.8475 -4.8875 21 8 -4.1777 4.0624 -3.2718 22 6 -3.7081 6.4213 -2.4039 23 6 -3.5512 7.7350 -2.5734 24 6 -3.8582 8.5067 -1.4660 25 6 -4.2650 7.8197 -0.3975 26 16 -4.2801 6.1012 -0.7718 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 3.8293 -0.0616 2.9495 33 1 0.7244 4.1968 -2.7810 34 1 -0.0713 2.6984 -3.3194 35 1 -2.0782 3.2859 -1.9861 36 1 -1.2819 4.7841 -1.4481 37 1 -1.1843 4.9199 -4.1923 38 1 -3.2099 8.1640 -3.5039 39 1 -3.7755 9.5836 -1.4674 40 1 -4.5460 8.2528 0.5512 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188034583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:03 Heat of formation + Delta-G solvation = -135.559131 kcal Electronic energy + Delta-G solvation = -25758.484238 eV Core-core repulsion = 21792.163961 eV Total energy + Delta-G solvation = -3966.320277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.76317 -38.19764 -37.41581 -36.48716 -36.11485 -35.40104 -33.54390 -31.45682 -30.43900 -30.25109 -27.31246 -24.81077 -24.31576 -23.02321 -20.95884 -20.57002 -19.63365 -19.42463 -18.89052 -17.69721 -17.10881 -16.71851 -16.37048 -16.17709 -15.74519 -15.32200 -15.16250 -14.61973 -14.49439 -14.36293 -13.59576 -13.30441 -13.10256 -12.90269 -12.86430 -12.60723 -12.37379 -12.29991 -12.17731 -11.88564 -11.79664 -11.62600 -11.42685 -11.31383 -11.19989 -11.16081 -10.96968 -10.69161 -10.31507 -9.85970 -9.82951 -9.71421 -9.64784 -9.40328 -8.90425 -8.83891 -8.48795 -6.21757 -4.29086 -0.02577 0.25689 1.10048 1.45854 2.09430 2.71261 2.92291 3.21786 3.27769 3.31321 3.43353 3.65300 4.24962 4.31900 4.51898 4.56526 4.88287 4.96038 4.98607 5.10220 5.26911 5.32772 5.40997 5.61027 5.72285 5.75569 5.87005 5.91079 6.22041 6.28370 6.44121 6.64795 6.84675 6.94670 7.14325 7.22892 7.58503 7.70808 7.90963 8.12488 8.57281 8.84224 9.36313 10.84889 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002437 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.645078 B =11486.861686 C =11858.075701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.355 6.355 14 C 0.455 3.545 15 O -0.516 6.516 16 C -0.124 4.124 17 C 0.125 3.875 18 N -1.114 6.114 19 S 2.724 3.276 20 O -0.954 6.954 21 O -0.947 6.947 22 C -0.799 4.799 23 C 0.007 3.993 24 C -0.167 4.167 25 C -0.175 4.175 26 S 0.230 5.770 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.266 0.734 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.421 0.579 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 14.376 -8.578 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.271 6.271 14 C 0.297 3.703 15 O -0.406 6.406 16 C -0.163 4.163 17 C -0.001 4.001 18 N -0.875 5.875 19 S 2.809 3.191 20 O -0.944 6.944 21 O -0.937 6.937 22 C -1.000 5.000 23 C -0.029 4.029 24 C -0.198 4.198 25 C -0.313 4.313 26 S 0.496 5.504 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.256 0.744 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.999 12.555 -7.655 21.005 hybrid contribution 1.759 1.878 -0.132 2.576 sum -13.240 14.433 -7.786 21.077 Atomic orbital electron populations 1.21865 0.98273 0.99119 1.00775 1.22025 0.92705 0.99310 1.03393 1.20702 0.95007 0.88820 0.78565 0.93417 1.21040 0.89695 1.39070 1.06247 0.91352 1.24884 0.99239 0.94734 0.95088 1.69886 1.35408 1.37731 1.09470 0.86285 0.83879 0.77692 0.78347 1.20436 1.20945 1.19599 1.86471 1.34002 1.62329 1.44279 1.22935 0.81096 0.77184 0.89120 1.90632 1.55443 1.58612 1.35914 1.21414 0.96821 1.01536 0.96577 1.21145 0.96546 0.97304 0.85080 1.55468 1.30152 1.74026 1.27882 1.01091 0.72351 0.73035 0.72582 1.93600 1.85492 1.76705 1.38611 1.93627 1.67691 1.48162 1.84221 1.35927 1.26971 1.17143 1.19957 1.20033 0.92633 0.90504 0.99691 1.20427 1.04732 1.01974 0.92634 1.26334 1.03476 0.98077 1.03449 1.84543 1.60447 1.04015 1.01348 0.92766 0.94901 0.94769 0.93961 0.87339 0.92363 0.87415 0.87308 0.88895 0.90433 0.74406 0.82794 0.83313 0.80883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.57 37.16 0.32 -2.73 16 2 C -0.14 -3.30 5.49 -26.73 -0.15 -3.45 16 3 C 0.22 5.67 2.25 -27.88 -0.06 5.61 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.22 8.90 -34.44 -0.31 -14.52 16 6 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.54 11.29 55.43 0.63 -23.91 16 9 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 O -0.35 -7.90 9.81 -39.27 -0.39 -8.29 16 14 C 0.45 8.51 6.41 36.01 0.23 8.74 16 15 O -0.52 -10.82 13.13 -18.75 -0.25 -11.07 16 16 C -0.12 -1.53 5.95 -27.89 -0.17 -1.70 16 17 C 0.13 1.44 5.51 -4.05 -0.02 1.42 16 18 N -1.11 -10.21 6.00 -10.61 -0.06 -10.27 16 19 S 2.72 29.88 5.88 -107.50 -0.63 29.25 16 20 O -0.95 -11.93 17.80 -57.17 -1.02 -12.95 16 21 O -0.95 -13.33 17.38 -57.17 -0.99 -14.33 16 22 C -0.80 -8.07 6.55 29.04 0.19 -7.88 16 23 C 0.01 0.06 9.84 -41.21 -0.41 -0.34 16 24 C -0.17 -1.23 10.18 -41.21 -0.42 -1.64 16 25 C -0.18 -1.32 11.23 29.04 0.33 -0.99 16 26 S 0.23 2.28 23.21 -107.50 -2.50 -0.22 16 27 H 0.05 1.21 7.80 -51.93 -0.40 0.80 16 28 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 2.86 5.95 -51.93 -0.31 2.56 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.18 7.71 -51.93 -0.40 0.78 16 36 H 0.08 0.88 8.10 -51.93 -0.42 0.45 16 37 H 0.42 2.75 8.65 -34.47 -0.30 2.45 16 38 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 39 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -33.83 365.80 -10.30 -44.12 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.02 Total: 2.48 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.56 Total: -15.90 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.56 Total: -34.18 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -2.64 Total: -46.63 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 32.16 SS G_CDS: -3.13 Total: 29.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.83 -10.30 -44.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188034583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.436 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds