Wall clock time and date at job start Wed Apr 1 2020 03:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46719 * 2 1 4 4 H 1.08997 * 109.47161 * 54.99931 * 3 2 1 5 5 C 1.50706 * 109.46835 * 175.00028 * 3 2 1 6 6 H 1.07998 * 119.99604 * 119.99819 * 5 3 2 7 7 C 1.37872 * 119.99932 * 299.99681 * 5 3 2 8 8 N 1.31517 * 120.00240 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00146 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47158 * 89.99750 * 9 7 5 11 11 H 1.48494 * 109.47303 * 210.00074 * 9 7 5 12 12 H 1.48498 * 109.46895 * 330.00406 * 9 7 5 13 13 O 1.45196 * 109.46901 * 294.99755 * 3 2 1 14 14 C 1.34234 * 116.99938 * 90.00275 * 13 3 2 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 3 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.47267 * 179.97438 * 17 16 14 19 19 S 1.65605 * 120.00090 * 164.99957 * 18 17 16 20 20 O 1.42097 * 106.40225 * 178.53874 * 19 18 17 21 21 O 1.42099 * 106.39815 * 311.46203 * 19 18 17 22 22 C 1.76203 * 107.21564 * 64.99960 * 19 18 17 23 23 C 1.33388 * 125.20136 * 90.00693 * 22 19 18 24 24 C 1.38419 * 114.91869 * 179.97438 * 23 22 19 25 25 C 1.33387 * 114.92267 * 359.97438 * 24 23 22 26 26 S 1.75878 * 125.20157 * 269.69119 * 22 19 18 27 27 H 1.09004 * 109.47094 * 300.00062 * 1 2 3 28 28 H 1.08994 * 109.47228 * 60.00506 * 1 2 3 29 29 H 1.09006 * 109.46744 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47481 * 239.99877 * 2 1 3 31 31 H 1.09003 * 109.46982 * 119.99347 * 2 1 3 32 32 H 0.96995 * 120.00188 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 34 34 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 35 35 H 1.09004 * 109.47330 * 299.99977 * 17 16 14 36 36 H 1.09005 * 109.47124 * 59.99773 * 17 16 14 37 37 H 0.97000 * 120.00235 * 344.99631 * 18 17 16 38 38 H 1.08004 * 122.54092 * 359.94299 * 23 22 19 39 39 H 1.08009 * 122.53792 * 180.02562 * 24 23 22 40 40 H 1.08008 * 125.20327 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8802 1.3812 10 1 6.4428 2.1132 2.0836 11 1 6.4390 -0.3108 2.1546 12 1 6.6130 0.8397 0.0270 13 8 1.6558 2.0916 -1.2407 14 6 0.4726 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2653 16 6 0.0073 3.4224 -2.5085 17 6 -1.3609 4.0600 -2.2590 18 7 -1.8130 4.7381 -3.4763 19 16 -3.3974 5.1946 -3.6301 20 8 -3.5066 5.8475 -4.8875 21 8 -4.1777 4.0624 -3.2718 22 6 -3.7081 6.4213 -2.4039 23 6 -3.5512 7.7350 -2.5734 24 6 -3.8582 8.5067 -1.4660 25 6 -4.2650 7.8197 -0.3975 26 16 -4.2801 6.1012 -0.7718 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 3.8293 -0.0616 2.9495 33 1 0.7244 4.1968 -2.7810 34 1 -0.0713 2.6984 -3.3194 35 1 -2.0782 3.2859 -1.9861 36 1 -1.2819 4.7841 -1.4481 37 1 -1.1843 4.9199 -4.1923 38 1 -3.2099 8.1640 -3.5039 39 1 -3.7755 9.5836 -1.4674 40 1 -4.5460 8.2528 0.5512 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188034583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:02 Heat of formation + Delta-G solvation = -159.245526 kcal Electronic energy + Delta-G solvation = -25759.511357 eV Core-core repulsion = 21792.163961 eV Total energy + Delta-G solvation = -3967.347397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36963 -38.86244 -38.34667 -37.92558 -37.08369 -36.63564 -35.47055 -33.36051 -31.55015 -30.90680 -29.25093 -25.75232 -25.44089 -24.69914 -22.38558 -21.55997 -21.11582 -20.28831 -19.73608 -18.89042 -18.50969 -18.42988 -17.51639 -17.22940 -16.99216 -16.72971 -16.18774 -16.03878 -15.64505 -15.45052 -14.80489 -14.70119 -14.24892 -14.00445 -13.88674 -13.57774 -13.55928 -13.32610 -13.28833 -13.25039 -13.16909 -13.11234 -12.84779 -12.80570 -12.68929 -12.52484 -12.49051 -12.12339 -11.83596 -11.72324 -11.42042 -11.21736 -10.79232 -10.67976 -10.50105 -10.36776 -9.62438 -8.25359 -6.41831 -0.81337 -0.47165 0.38887 0.82169 1.41910 1.43547 1.45021 1.47910 1.56247 1.79866 2.21861 2.47326 2.60560 3.04497 3.38531 3.56499 4.00601 4.02186 4.08406 4.27767 4.36881 4.40734 4.42305 4.43535 4.47556 4.63607 4.77750 4.83688 4.87933 4.96773 5.01778 5.12905 5.24754 5.30790 5.42914 5.54471 5.70726 6.00279 6.03359 6.18977 6.63638 7.03648 7.30230 8.81108 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002437 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.645078 B =11486.861686 C =11858.075701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C 0.225 3.775 4 H 0.010 0.990 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.263 1.263 13 O -0.364 6.364 14 C 0.446 3.554 15 O -0.543 6.543 16 C -0.112 4.112 17 C 0.129 3.871 18 N -1.100 6.100 19 S 2.742 3.258 20 O -0.970 6.970 21 O -0.984 6.984 22 C -0.815 4.815 23 C 0.014 3.986 24 C -0.170 4.170 25 C -0.160 4.160 26 S 0.171 5.829 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.269 0.731 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.435 0.565 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 16.119 -9.721 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.187 1.187 13 O -0.280 6.280 14 C 0.290 3.710 15 O -0.434 6.434 16 C -0.151 4.151 17 C 0.003 3.997 18 N -0.863 5.863 19 S 2.829 3.171 20 O -0.960 6.960 21 O -0.974 6.974 22 C -1.018 5.018 23 C -0.023 4.023 24 C -0.200 4.200 25 C -0.298 4.298 26 S 0.437 5.563 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.273 0.727 38 H 0.192 0.808 39 H 0.199 0.801 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.333 14.301 -8.849 22.097 hybrid contribution 1.476 1.466 0.242 2.095 sum -12.857 15.767 -8.607 22.090 Atomic orbital electron populations 1.21726 0.96213 1.00556 1.00313 1.21873 0.94496 0.98273 1.02246 1.20344 0.94394 0.89245 0.78831 0.97255 1.21350 0.90705 1.39799 1.06773 0.91525 1.25780 1.04049 0.93975 0.94490 1.70013 1.37363 1.37988 1.09876 0.85240 0.77974 0.77911 0.78645 1.19809 1.20305 1.18731 1.86455 1.36106 1.63047 1.42404 1.24151 0.79583 0.76371 0.90906 1.90625 1.55749 1.59371 1.37635 1.21523 0.97554 1.02385 0.93589 1.20994 0.95733 0.97116 0.85905 1.55133 1.29820 1.73713 1.27656 1.00249 0.72177 0.72491 0.72151 1.93573 1.85821 1.76885 1.39712 1.93581 1.68938 1.50103 1.84745 1.35652 1.29124 1.17512 1.19463 1.20467 0.90977 0.89980 1.00843 1.20805 1.03889 1.03489 0.91845 1.26688 1.02342 0.95978 1.04749 1.84768 1.62062 1.07157 1.02361 0.94468 0.94052 0.92309 0.93619 0.89776 0.92126 0.84172 0.84762 0.90433 0.90354 0.72672 0.80832 0.80140 0.78121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.57 71.98 0.62 -5.00 16 2 C -0.13 -6.45 5.49 30.60 0.17 -6.29 16 3 C 0.23 11.85 2.25 29.85 0.07 11.92 16 4 H 0.01 0.57 7.16 -2.39 -0.02 0.55 16 5 C -0.55 -30.32 8.90 25.60 0.23 -30.09 16 6 H 0.07 3.60 7.81 -2.91 -0.02 3.58 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -51.56 11.29 21.45 0.24 -51.32 16 9 Si 0.98 42.05 29.54 68.60 2.03 44.07 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 O -0.36 -16.27 9.81 -51.46 -0.50 -16.77 16 14 C 0.45 16.58 6.41 71.24 0.46 17.03 16 15 O -0.54 -23.27 13.13 21.98 0.29 -22.98 16 16 C -0.11 -2.54 5.95 29.85 0.18 -2.36 16 17 C 0.13 2.84 5.51 86.38 0.48 3.31 16 18 N -1.10 -18.49 6.00 -187.49 -1.12 -19.61 16 19 S 2.74 58.62 5.88 -56.49 -0.33 58.29 16 20 O -0.97 -23.22 17.80 -128.00 -2.28 -25.50 16 21 O -0.98 -28.21 17.38 -128.00 -2.22 -30.43 16 22 C -0.81 -15.77 6.55 66.72 0.44 -15.33 16 23 C 0.01 0.20 9.84 21.21 0.21 0.41 16 24 C -0.17 -2.00 10.18 21.21 0.22 -1.79 16 25 C -0.16 -2.07 11.23 66.72 0.75 -1.32 16 26 S 0.17 3.38 23.21 -56.49 -1.31 2.07 16 27 H 0.04 1.69 7.80 -2.39 -0.02 1.67 16 28 H 0.04 1.67 6.06 -2.39 -0.01 1.65 16 29 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 31 H 0.08 4.57 5.95 -2.39 -0.01 4.56 16 32 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.14 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.08 1.98 7.71 -2.38 -0.02 1.96 16 36 H 0.08 1.73 8.10 -2.38 -0.02 1.71 16 37 H 0.43 4.64 8.65 -96.74 -0.84 3.80 16 38 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -75.26 365.80 -0.73 -75.99 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.24 Total: 14.34 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 4.25 Total: -28.14 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -0.88 Total: -70.93 kcal Atomic # 8 Polarization: -90.96 SS G_CDS: -4.72 Total: -95.68 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 62.00 SS G_CDS: -1.64 Total: 60.35 kcal Total: -75.26 -0.73 -75.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188034583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.258 kcal (2) G-P(sol) polarization free energy of solvation -75.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds