Wall clock time and date at job start Wed Apr 1 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34233 * 117.00487 * 270.00398 * 13 3 2 15 15 O 1.20827 * 119.99435 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00238 * 180.02562 * 14 13 3 17 17 C 1.52996 * 109.47130 * 179.97438 * 16 14 13 18 18 N 1.46498 * 109.47036 * 179.97438 * 17 16 14 19 19 S 1.65604 * 119.99607 * 164.99668 * 18 17 16 20 20 O 1.42111 * 106.39657 * 178.54072 * 19 18 17 21 21 O 1.42089 * 106.40476 * 311.46161 * 19 18 17 22 22 C 1.76202 * 107.21591 * 65.00662 * 19 18 17 23 23 C 1.33388 * 125.20551 * 90.00147 * 22 19 18 24 24 C 1.38423 * 114.92127 * 179.97438 * 23 22 19 25 25 C 1.33390 * 114.92244 * 359.97438 * 24 23 22 26 26 S 1.75885 * 125.19908 * 269.68812 * 22 19 18 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.46571 * 299.99629 * 16 14 13 34 34 H 1.09002 * 109.47135 * 59.99355 * 16 14 13 35 35 H 1.09001 * 109.47039 * 300.00066 * 17 16 14 36 36 H 1.08997 * 109.47162 * 59.99866 * 17 16 14 37 37 H 0.96995 * 120.00039 * 345.00359 * 18 17 16 38 38 H 1.08003 * 122.54110 * 359.94533 * 23 22 19 39 39 H 1.07999 * 122.54134 * 180.02562 * 24 23 22 40 40 H 1.07995 * 125.20388 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2189 2.7377 0.2653 16 6 0.0074 3.4225 2.5085 17 6 -1.3608 4.0601 2.2590 18 7 -1.8133 4.7372 3.4768 19 16 -3.0657 5.8185 3.4061 20 8 -3.2827 6.2684 4.7366 21 8 -2.7779 6.6959 2.3262 22 6 -4.5075 4.9170 2.9444 23 6 -5.3569 4.3373 3.7939 24 6 -6.4218 3.6832 3.1987 25 6 -6.4375 3.7322 1.8657 26 16 -5.0510 4.6506 1.2930 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 -0.0712 2.6983 3.3195 34 1 0.7245 4.1968 2.7811 35 1 -1.2818 4.7842 1.4481 36 1 -2.0780 3.2860 1.9862 37 1 -1.3793 4.5524 4.3243 38 1 -5.2237 4.3749 4.8650 39 1 -7.1827 3.1726 3.7701 40 1 -7.1887 3.2805 1.2350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188034611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:05 Heat of formation + Delta-G solvation = -135.517415 kcal Electronic energy + Delta-G solvation = -25776.613333 eV Core-core repulsion = 21810.294864 eV Total energy + Delta-G solvation = -3966.318468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.76472 -38.20199 -37.41378 -36.48908 -36.11213 -35.40225 -33.54811 -31.47152 -30.44300 -30.25620 -27.32178 -24.81570 -24.31609 -23.03670 -20.96603 -20.57939 -19.63883 -19.42991 -18.89009 -17.69581 -17.11952 -16.71079 -16.38536 -16.07938 -15.87805 -15.30111 -15.15895 -14.62826 -14.43845 -14.37283 -13.59471 -13.31659 -13.18110 -12.90553 -12.88152 -12.55666 -12.34110 -12.26892 -12.26149 -11.89562 -11.79378 -11.60999 -11.45920 -11.32737 -11.18680 -11.16304 -10.99308 -10.68590 -10.30358 -9.87552 -9.84018 -9.72740 -9.64024 -9.41005 -8.90975 -8.84162 -8.48996 -6.21697 -4.28706 -0.02822 0.25376 1.09590 1.45399 2.08803 2.71338 2.92167 3.21633 3.28817 3.33264 3.43561 3.65395 4.25231 4.32375 4.51258 4.56482 4.87692 4.95673 4.98404 5.10523 5.26811 5.32608 5.40451 5.60362 5.70825 5.76831 5.86455 5.91065 6.17647 6.24152 6.40596 6.64772 6.82188 6.91586 7.11973 7.21074 7.58602 7.69989 7.90561 8.12141 8.57395 8.84742 9.36770 10.85089 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.002455 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.401567 B =11401.101328 C =12186.094000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.355 6.355 14 C 0.455 3.545 15 O -0.516 6.516 16 C -0.124 4.124 17 C 0.125 3.875 18 N -1.114 6.114 19 S 2.724 3.276 20 O -0.954 6.954 21 O -0.947 6.947 22 C -0.799 4.799 23 C 0.007 3.993 24 C -0.167 4.167 25 C -0.175 4.175 26 S 0.231 5.769 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.109 0.891 32 H 0.266 0.734 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.421 0.579 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 5.648 11.727 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.271 6.271 14 C 0.297 3.703 15 O -0.406 6.406 16 C -0.163 4.163 17 C -0.001 4.001 18 N -0.875 5.875 19 S 2.809 3.191 20 O -0.944 6.944 21 O -0.937 6.937 22 C -1.000 5.000 23 C -0.029 4.029 24 C -0.198 4.198 25 C -0.314 4.314 26 S 0.497 5.503 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.256 0.744 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.021 6.863 9.719 21.595 hybrid contribution 0.009 -1.416 1.303 1.924 sum -18.012 5.447 11.022 21.808 Atomic orbital electron populations 1.21861 0.98387 0.98987 1.00731 1.22023 0.92627 0.99378 1.03397 1.20706 0.95073 0.88755 0.78612 0.93362 1.21080 0.89682 1.38934 1.06250 0.91275 1.24887 0.99268 0.94755 0.95061 1.69891 1.35322 1.37854 1.09467 0.86232 0.83871 0.77870 0.78243 1.19479 1.20737 1.20745 1.86471 1.34011 1.62328 1.44266 1.22938 0.81114 0.77141 0.89141 1.90633 1.55520 1.58570 1.35881 1.21416 0.97086 1.01425 0.96419 1.21144 0.95687 0.97695 0.85547 1.55466 1.50610 1.64313 1.17133 1.01101 0.71966 0.72489 0.73522 1.93602 1.85537 1.78602 1.36661 1.93627 1.83331 1.60505 1.56197 1.35935 1.28481 1.29351 1.06204 1.20033 0.91064 0.90888 1.00897 1.20425 1.01029 1.04189 0.94120 1.26334 1.02750 1.02774 0.99507 1.84556 1.17537 1.46651 1.01580 0.94980 0.94862 0.92746 0.93984 0.87321 0.92422 0.87529 0.87189 0.88835 0.90494 0.74415 0.82799 0.83326 0.80895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.57 37.16 0.32 -2.64 16 2 C -0.14 -3.26 5.49 -26.73 -0.15 -3.41 16 3 C 0.22 5.66 2.25 -27.89 -0.06 5.59 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.23 8.90 -34.44 -0.31 -14.54 16 6 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.57 11.29 55.43 0.63 -23.94 16 9 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 O -0.35 -7.90 9.81 -39.27 -0.39 -8.28 16 14 C 0.45 8.51 6.41 36.01 0.23 8.74 16 15 O -0.52 -10.82 13.13 -18.75 -0.25 -11.07 16 16 C -0.12 -1.53 5.95 -27.88 -0.17 -1.70 16 17 C 0.13 1.44 5.51 -4.04 -0.02 1.41 16 18 N -1.11 -10.20 6.00 -10.62 -0.06 -10.26 16 19 S 2.72 29.90 5.88 -107.50 -0.63 29.27 16 20 O -0.95 -11.93 17.80 -57.17 -1.02 -12.95 16 21 O -0.95 -13.41 17.38 -57.17 -0.99 -14.40 16 22 C -0.80 -8.02 6.55 29.04 0.19 -7.83 16 23 C 0.01 0.06 9.84 -41.21 -0.41 -0.35 16 24 C -0.17 -1.21 10.18 -41.21 -0.42 -1.63 16 25 C -0.18 -1.30 11.23 29.04 0.33 -0.97 16 26 S 0.23 2.27 23.21 -107.50 -2.50 -0.23 16 27 H 0.03 0.62 6.06 -51.93 -0.31 0.31 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 1.19 7.80 -51.93 -0.40 0.78 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.11 2.85 5.95 -51.93 -0.31 2.54 16 32 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 33 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.20 7.71 -51.93 -0.40 0.80 16 36 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.42 2.74 8.65 -34.48 -0.30 2.44 16 38 H 0.15 1.00 8.05 -52.48 -0.42 0.58 16 39 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -33.90 365.81 -10.30 -44.20 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.02 Total: 2.21 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.56 Total: -15.73 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.56 Total: -34.20 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -2.64 Total: -46.71 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 32.17 SS G_CDS: -3.13 Total: 29.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.90 -10.30 -44.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188034611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.321 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds