Wall clock time and date at job start Wed Apr 1 2020 03:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34233 * 117.00487 * 270.00398 * 13 3 2 15 15 O 1.20827 * 119.99435 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00238 * 180.02562 * 14 13 3 17 17 C 1.52996 * 109.47130 * 179.97438 * 16 14 13 18 18 N 1.46498 * 109.47036 * 179.97438 * 17 16 14 19 19 S 1.65604 * 119.99607 * 164.99668 * 18 17 16 20 20 O 1.42111 * 106.39657 * 178.54072 * 19 18 17 21 21 O 1.42089 * 106.40476 * 311.46161 * 19 18 17 22 22 C 1.76202 * 107.21591 * 65.00662 * 19 18 17 23 23 C 1.33388 * 125.20551 * 90.00147 * 22 19 18 24 24 C 1.38423 * 114.92127 * 179.97438 * 23 22 19 25 25 C 1.33390 * 114.92244 * 359.97438 * 24 23 22 26 26 S 1.75885 * 125.19908 * 269.68812 * 22 19 18 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.46571 * 299.99629 * 16 14 13 34 34 H 1.09002 * 109.47135 * 59.99355 * 16 14 13 35 35 H 1.09001 * 109.47039 * 300.00066 * 17 16 14 36 36 H 1.08997 * 109.47162 * 59.99866 * 17 16 14 37 37 H 0.96995 * 120.00039 * 345.00359 * 18 17 16 38 38 H 1.08003 * 122.54110 * 359.94533 * 23 22 19 39 39 H 1.07999 * 122.54134 * 180.02562 * 24 23 22 40 40 H 1.07995 * 125.20388 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2189 2.7377 0.2653 16 6 0.0074 3.4225 2.5085 17 6 -1.3608 4.0601 2.2590 18 7 -1.8133 4.7372 3.4768 19 16 -3.0657 5.8185 3.4061 20 8 -3.2827 6.2684 4.7366 21 8 -2.7779 6.6959 2.3262 22 6 -4.5075 4.9170 2.9444 23 6 -5.3569 4.3373 3.7939 24 6 -6.4218 3.6832 3.1987 25 6 -6.4375 3.7322 1.8657 26 16 -5.0510 4.6506 1.2930 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 -0.0712 2.6983 3.3195 34 1 0.7245 4.1968 2.7811 35 1 -1.2818 4.7842 1.4481 36 1 -2.0780 3.2860 1.9862 37 1 -1.3793 4.5524 4.3243 38 1 -5.2237 4.3749 4.8650 39 1 -7.1827 3.1726 3.7701 40 1 -7.1887 3.2805 1.2350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188034611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:04 Heat of formation + Delta-G solvation = -159.357740 kcal Electronic energy + Delta-G solvation = -25777.647127 eV Core-core repulsion = 21810.294864 eV Total energy + Delta-G solvation = -3967.352263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36978 -38.85818 -38.34577 -37.92559 -37.08396 -36.63580 -35.47240 -33.35926 -31.54956 -30.90233 -29.25206 -25.75383 -25.43676 -24.69870 -22.38415 -21.55842 -21.11537 -20.28384 -19.73277 -18.88784 -18.52409 -18.43120 -17.42560 -17.31181 -17.02091 -16.72877 -16.18598 -15.99778 -15.64701 -15.42867 -14.84539 -14.70826 -14.26939 -13.92272 -13.88679 -13.62051 -13.55112 -13.33064 -13.29520 -13.25121 -13.16863 -13.08093 -12.89934 -12.75905 -12.70944 -12.53027 -12.47390 -12.12137 -11.82797 -11.72335 -11.41965 -11.21468 -10.78850 -10.68034 -10.50344 -10.36352 -9.62154 -8.26086 -6.42157 -0.81240 -0.46816 0.39243 0.82875 1.41424 1.42820 1.43966 1.48409 1.56643 1.80166 2.21956 2.46922 2.60747 3.03894 3.38622 3.56430 4.01237 4.03006 4.07563 4.28022 4.37360 4.41330 4.42757 4.44100 4.47488 4.64009 4.77784 4.84356 4.88142 4.96824 5.02292 5.12931 5.25437 5.31470 5.43824 5.54425 5.71236 6.00585 6.03652 6.18887 6.63450 7.03572 7.29921 8.80580 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.002455 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.401567 B =11401.101328 C =12186.094000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.224 3.776 4 H 0.008 0.992 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.978 3.022 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.278 1.278 13 O -0.364 6.364 14 C 0.446 3.554 15 O -0.543 6.543 16 C -0.112 4.112 17 C 0.129 3.871 18 N -1.099 6.099 19 S 2.741 3.259 20 O -0.970 6.970 21 O -0.985 6.985 22 C -0.814 4.814 23 C 0.014 3.986 24 C -0.170 4.170 25 C -0.159 4.159 26 S 0.170 5.830 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.269 0.731 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.435 0.565 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.143 4.772 13.810 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.026 0.974 5 C -0.586 4.586 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.188 1.188 11 H -0.198 1.198 12 H -0.204 1.204 13 O -0.280 6.280 14 C 0.290 3.710 15 O -0.434 6.434 16 C -0.150 4.150 17 C 0.003 3.997 18 N -0.863 5.863 19 S 2.829 3.171 20 O -0.960 6.960 21 O -0.975 6.975 22 C -1.017 5.017 23 C -0.022 4.022 24 C -0.200 4.200 25 C -0.297 4.297 26 S 0.435 5.565 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.273 0.727 38 H 0.192 0.808 39 H 0.199 0.801 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -18.797 6.008 11.845 23.016 hybrid contribution 0.108 -1.145 0.685 1.339 sum -18.688 4.863 12.530 23.020 Atomic orbital electron populations 1.21716 0.96040 1.00575 1.00364 1.21860 0.94690 0.98033 1.02267 1.20352 0.94363 0.89374 0.78811 0.97409 1.21381 0.90782 1.39677 1.06748 0.91649 1.25770 1.04015 0.94027 0.94481 1.70013 1.37253 1.38071 1.09863 0.85202 0.78056 0.78247 0.78311 1.18799 1.19759 1.20366 1.86454 1.36124 1.63058 1.42382 1.24153 0.79613 0.76317 0.90931 1.90627 1.55867 1.59314 1.37572 1.21526 0.97534 1.02202 0.93788 1.20993 0.95487 0.97400 0.85859 1.55126 1.50417 1.63640 1.17132 1.00251 0.72150 0.72303 0.72404 1.93575 1.85929 1.79264 1.37226 1.93581 1.84130 1.62447 1.57353 1.35631 1.28776 1.31075 1.06237 1.20469 0.90540 0.89365 1.01818 1.20804 1.01197 1.03779 0.94200 1.26686 1.01643 1.01354 0.99989 1.84797 1.20157 1.48758 1.02767 0.93803 0.92198 0.94597 0.93511 0.89856 0.92125 0.83891 0.85043 0.90689 0.90098 0.72661 0.80819 0.80107 0.78104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.57 71.98 0.62 -4.74 16 2 C -0.13 -6.33 5.49 30.59 0.17 -6.17 16 3 C 0.22 11.81 2.25 29.85 0.07 11.88 16 4 H 0.01 0.48 7.16 -2.39 -0.02 0.47 16 5 C -0.55 -30.50 8.90 25.60 0.23 -30.27 16 6 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -51.64 11.29 21.45 0.24 -51.40 16 9 Si 0.98 42.45 29.54 68.60 2.03 44.47 16 10 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 13 O -0.36 -16.28 9.81 -51.44 -0.50 -16.78 16 14 C 0.45 16.57 6.41 71.24 0.46 17.03 16 15 O -0.54 -23.27 13.13 21.96 0.29 -22.98 16 16 C -0.11 -2.54 5.95 29.85 0.18 -2.36 16 17 C 0.13 2.84 5.51 86.38 0.48 3.31 16 18 N -1.10 -18.49 6.00 -187.50 -1.12 -19.61 16 19 S 2.74 58.86 5.88 -56.49 -0.33 58.53 16 20 O -0.97 -23.26 17.80 -128.00 -2.28 -25.54 16 21 O -0.99 -28.67 17.38 -128.00 -2.22 -30.89 16 22 C -0.81 -15.58 6.55 66.72 0.44 -15.15 16 23 C 0.01 0.21 9.84 21.22 0.21 0.41 16 24 C -0.17 -1.92 10.18 21.22 0.22 -1.70 16 25 C -0.16 -1.99 11.23 66.72 0.75 -1.24 16 26 S 0.17 3.32 23.21 -56.49 -1.31 2.01 16 27 H 0.04 1.67 6.06 -2.39 -0.01 1.66 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.03 1.59 7.80 -2.38 -0.02 1.57 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.08 4.48 5.95 -2.39 -0.01 4.47 16 32 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.14 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.07 1.95 7.71 -2.39 -0.02 1.94 16 36 H 0.08 1.73 8.10 -2.39 -0.02 1.72 16 37 H 0.43 4.60 8.65 -96.75 -0.84 3.77 16 38 H 0.17 1.73 8.05 -2.91 -0.02 1.71 16 39 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -75.87 365.81 -0.73 -76.60 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.24 Total: 13.24 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 4.25 Total: -27.63 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -0.88 Total: -71.02 kcal Atomic # 8 Polarization: -91.48 SS G_CDS: -4.72 Total: -96.20 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 62.18 SS G_CDS: -1.64 Total: 60.54 kcal Total: -75.87 -0.73 -76.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188034611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.759 kcal (2) G-P(sol) polarization free energy of solvation -75.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds