Wall clock time and date at job start Wed Apr 1 2020 04:17:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00321 * 2 1
4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1
5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1
6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1
7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1
9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1
10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2
11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2
12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7
13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9
14 14 O 1.21618 * 120.00542 * 179.86754 * 13 12 11
15 15 C 1.47286 * 119.99818 * 359.87319 * 13 12 11
16 16 C 1.37963 * 126.81022 * 359.67920 * 15 13 12
17 17 N 1.34156 * 107.89029 * 179.83558 * 16 15 13
18 18 H 0.96994 * 125.16531 * 180.16425 * 17 16 15
19 19 N 1.39773 * 109.67394 * 0.44585 * 17 16 15
20 20 C 1.31373 * 109.07947 * 359.72377 * 19 17 16
21 21 C 1.48285 * 126.51271 * 179.97438 * 20 19 17
22 22 C 1.39390 * 120.11027 * 144.76711 * 21 20 19
23 23 C 1.37983 * 119.88145 * 179.71770 * 22 21 20
24 24 C 1.38444 * 120.11424 * 0.57571 * 23 22 21
25 25 Cl 1.73599 * 119.88838 * 179.69732 * 24 23 22
26 26 C 1.38452 * 120.22758 * 359.67273 * 24 23 22
27 27 C 1.37989 * 120.11106 * 0.05235 * 26 24 23
28 28 C 1.47586 * 91.05425 * 24.54926 * 12 11 9
29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3
30 30 H 0.96700 * 113.99800 * 309.66654 * 10 9 7
31 31 H 1.08995 * 113.76496 * 336.35212 * 11 9 7
32 32 H 1.09005 * 113.76577 * 107.74446 * 11 9 7
33 33 H 1.08002 * 126.05531 * 359.97438 * 16 15 13
34 34 H 1.07994 * 120.05642 * 359.97438 * 22 21 20
35 35 H 1.08003 * 119.94276 * 180.25168 * 23 22 21
36 36 H 1.08003 * 119.94730 * 180.02562 * 26 24 23
37 37 H 1.07997 * 120.05771 * 179.97438 * 27 26 24
38 38 H 1.08993 * 113.76952 * 221.15022 * 28 12 11
39 39 H 1.08993 * 113.76905 * 89.74994 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1030 1.6963 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 8 0.2446 -2.5614 -1.0132
11 6 0.7562 -2.9292 1.3924
12 7 1.1919 -4.2900 1.0142
13 6 0.8427 -5.5338 1.3981
14 8 1.3862 -6.4999 0.8977
15 6 -0.1973 -5.7232 2.4237
16 6 -0.8965 -4.7342 3.0844
17 7 -1.7497 -5.3288 3.9319
18 1 -2.3660 -4.8657 4.5206
19 7 -1.6112 -6.7167 3.8426
20 6 -0.6902 -6.9998 2.9495
21 6 -0.2353 -8.3534 2.5497
22 6 0.1278 -8.6070 1.2281
23 6 0.5559 -9.8668 0.8625
24 6 0.6139 -10.8809 1.8032
25 17 1.1460 -12.4657 1.3351
26 6 0.2494 -10.6354 3.1161
27 6 -0.1748 -9.3777 3.4932
28 6 2.1609 -3.7402 0.0462
29 1 -0.4850 0.8401 0.0004
30 1 -0.3474 -1.7969 -1.0267
31 1 1.3275 -2.4975 2.2141
32 1 -0.3215 -2.8326 1.5249
33 1 -0.7794 -3.6700 2.9427
34 1 0.0780 -7.8179 0.4925
35 1 0.8414 -10.0634 -0.1604
36 1 0.2967 -11.4298 3.8463
37 1 -0.4593 -9.1872 4.5175
38 1 2.2027 -4.2899 -0.8940
39 1 3.1456 -3.5472 0.4717
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000188678741.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:17:18
Heat of formation + Delta-G solvation = 51.305328 kcal
Electronic energy + Delta-G solvation = -27261.523764 eV
Core-core repulsion = 23198.111631 eV
Total energy + Delta-G solvation = -4063.412133 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.082 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.15108 -39.26762 -39.02391 -37.19269 -36.49065 -34.02749 -32.69749 -32.29434
-31.10188 -30.66879 -29.63006 -28.20161 -25.47078 -25.40689 -23.51322 -23.03039
-22.22012 -20.29170 -19.73989 -19.02348 -17.71452 -17.29207 -16.97953 -16.14510
-15.52799 -15.43312 -15.35772 -14.89077 -14.86447 -14.49532 -14.17886 -13.94889
-13.55345 -13.47566 -13.22446 -13.03445 -12.58032 -12.29437 -12.03206 -11.73981
-11.64312 -11.63605 -11.59433 -11.14001 -11.07481 -11.04486 -10.70905 -10.59661
-10.36395 -9.95641 -9.71136 -9.29779 -8.91231 -8.83724 -8.81730 -8.51288
-8.26405 -7.85261 -6.46992 -4.57039 0.82534 1.39253 1.62783 2.07199
2.28436 2.63751 3.11022 3.17300 3.19946 3.50413 3.69831 3.86959
4.12772 4.30139 4.62524 4.77203 4.85559 4.91385 5.12279 5.20779
5.37100 5.41617 5.55169 5.56922 5.70254 5.83267 5.96971 6.04155
6.15400 6.27928 6.29158 6.37858 6.44126 6.52122 6.55147 6.65899
6.83473 7.02178 7.06121 7.45159 7.55668 7.74687 8.43246 8.46484
8.78110 9.14460 9.35043 10.59509
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.019433 B = 0.002557 C = 0.002336
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1440.511050 B =10948.689167 C =11983.269503
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.073 3.927
3 Si 0.907 3.093
4 H -0.285 1.285
5 H -0.274 1.274
6 H -0.273 1.273
7 C -0.537 4.537
8 H 0.071 0.929
9 C 0.240 3.760
10 O -0.571 6.571
11 C 0.070 3.930
12 N -0.628 5.628
13 C 0.604 3.396
14 O -0.557 6.557
15 C -0.265 4.265
16 C 0.106 3.894
17 N -0.467 5.467
18 H 0.443 0.557
19 N -0.286 5.286
20 C 0.164 3.836
21 C -0.019 4.019
22 C -0.036 4.036
23 C -0.119 4.119
24 C -0.023 4.023
25 Cl -0.079 7.079
26 C -0.127 4.127
27 C -0.078 4.078
28 C 0.116 3.884
29 H 0.273 0.727
30 H 0.391 0.609
31 H 0.084 0.916
32 H 0.068 0.932
33 H 0.196 0.804
34 H 0.157 0.843
35 H 0.135 0.865
36 H 0.133 0.867
37 H 0.132 0.868
38 H 0.072 0.928
39 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.144 -11.787 7.673 14.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.130 4.130
3 Si 0.734 3.266
4 H -0.210 1.210
5 H -0.199 1.199
6 H -0.198 1.198
7 C -0.575 4.575
8 H 0.089 0.911
9 C 0.199 3.801
10 O -0.383 6.383
11 C -0.052 4.052
12 N -0.360 5.360
13 C 0.395 3.605
14 O -0.439 6.439
15 C -0.280 4.280
16 C -0.043 4.043
17 N -0.172 5.172
18 H 0.287 0.713
19 N -0.107 5.107
20 C -0.005 4.005
21 C -0.021 4.021
22 C -0.055 4.055
23 C -0.138 4.138
24 C -0.050 4.050
25 Cl -0.051 7.051
26 C -0.146 4.146
27 C -0.097 4.097
28 C -0.006 4.006
29 H 0.084 0.916
30 H 0.246 0.754
31 H 0.102 0.898
32 H 0.087 0.913
33 H 0.212 0.788
34 H 0.175 0.825
35 H 0.153 0.847
36 H 0.150 0.850
37 H 0.150 0.850
38 H 0.091 0.909
39 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -3.588 -13.486 8.129 16.150
hybrid contribution 0.373 2.137 0.120 2.173
sum -3.215 -11.349 8.249 14.394
Atomic orbital electron populations
1.69385 1.06137 1.28290 1.50122 1.25057 0.95032 0.99833 0.93051
0.86404 0.79533 0.81648 0.79048 1.21040 1.19915 1.19816 1.21478
0.93960 0.89933 1.52136 0.91061 1.19819 0.85675 0.91272 0.83364
1.86080 1.47028 1.49783 1.55360 1.24473 0.99487 0.78125 1.03143
1.50029 1.40160 1.04302 1.41514 1.16743 0.81454 0.81845 0.80485
1.90668 1.56772 1.38560 1.57939 1.21359 1.07505 0.91236 1.07878
1.23632 0.90201 1.00068 0.90403 1.45932 1.32720 1.04623 1.33956
0.71271 1.77241 1.20611 0.91238 1.21641 1.21709 0.93110 0.92491
0.93140 1.17737 1.01552 0.88823 0.94037 1.21716 0.91915 0.95961
0.95933 1.21000 1.01418 0.91770 0.99584 1.21078 1.02450 0.86533
0.94946 1.98355 1.88910 1.25303 1.92498 1.20826 1.01843 0.97537
0.94379 1.21102 0.97802 0.91377 0.99437 1.23433 0.93213 0.92543
0.91376 0.91643 0.75412 0.89824 0.91339 0.78778 0.82526 0.84709
0.84953 0.84984 0.90933 0.89588
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -21.24 11.20 55.43 0.62 -20.62 16
2 C 0.07 1.71 5.40 -17.82 -0.10 1.61 16
3 Si 0.91 18.50 29.54 -169.99 -5.02 13.48 16
4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16
5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
7 C -0.54 -12.61 8.61 -34.44 -0.30 -12.90 16
8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16
9 C 0.24 5.32 1.40 -90.84 -0.13 5.19 16
10 O -0.57 -13.72 13.49 -35.23 -0.48 -14.19 16
11 C 0.07 1.35 6.57 -2.84 -0.02 1.33 16
12 N -0.63 -12.28 3.61 -179.42 -0.65 -12.93 16
13 C 0.60 11.75 7.91 -12.58 -0.10 11.65 16
14 O -0.56 -11.70 13.18 5.26 0.07 -11.63 16
15 C -0.27 -4.45 6.26 -102.95 -0.64 -5.09 16
16 C 0.11 1.44 11.09 -16.64 -0.18 1.26 16
17 N -0.47 -5.47 7.20 30.81 0.22 -5.24 16
18 H 0.44 3.39 8.96 -182.85 -1.64 1.75 16
19 N -0.29 -4.13 12.63 34.58 0.44 -3.69 16
20 C 0.16 2.62 6.94 -80.56 -0.56 2.06 16
21 C -0.02 -0.29 5.73 -104.91 -0.60 -0.89 16
22 C -0.04 -0.56 7.77 -39.25 -0.30 -0.86 16
23 C -0.12 -1.62 9.81 -39.60 -0.39 -2.01 16
24 C -0.02 -0.29 6.32 -39.43 -0.25 -0.54 16
25 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.39 16
26 C -0.13 -1.50 9.81 -39.59 -0.39 -1.88 16
27 C -0.08 -1.00 9.76 -39.24 -0.38 -1.38 16
28 C 0.12 2.36 8.23 -2.96 -0.02 2.34 16
29 H 0.27 6.20 8.31 -40.82 -0.34 5.87 16
30 H 0.39 9.48 6.60 45.56 0.30 9.78 16
31 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16
32 H 0.07 1.25 6.30 -51.93 -0.33 0.92 16
33 H 0.20 2.35 5.14 -52.49 -0.27 2.08 16
34 H 0.16 2.72 5.67 -52.49 -0.30 2.42 16
35 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16
36 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16
37 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16
38 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16
39 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16
LS Contribution 350.01 15.07 5.27 5.27
Total: -1.00 -27.65 350.01 -9.70 -37.34
By element:
Atomic # 1 Polarization: 19.03 SS G_CDS: -4.31 Total: 14.72 kcal
Atomic # 6 Polarization: 4.23 SS G_CDS: -4.37 Total: -0.13 kcal
Atomic # 7 Polarization: -43.11 SS G_CDS: 0.63 Total: -42.48 kcal
Atomic # 8 Polarization: -25.41 SS G_CDS: -0.41 Total: -25.82 kcal
Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal
Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -27.65 -9.70 -37.34 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000188678741.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.648 kcal
(2) G-P(sol) polarization free energy of solvation -27.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.003 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds