Wall clock time and date at job start Wed Apr 1 2020 04:17:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00321 * 2 1
4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1
5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1
6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1
7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1
9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1
10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2
11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2
12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7
13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9
14 14 O 1.21618 * 120.00542 * 179.86754 * 13 12 11
15 15 C 1.47286 * 119.99818 * 359.87319 * 13 12 11
16 16 C 1.37963 * 126.81022 * 359.67920 * 15 13 12
17 17 N 1.34156 * 107.89029 * 179.83558 * 16 15 13
18 18 H 0.96994 * 125.16531 * 180.16425 * 17 16 15
19 19 N 1.39773 * 109.67394 * 0.44585 * 17 16 15
20 20 C 1.31373 * 109.07947 * 359.72377 * 19 17 16
21 21 C 1.48285 * 126.51271 * 179.97438 * 20 19 17
22 22 C 1.39390 * 120.11027 * 144.76711 * 21 20 19
23 23 C 1.37983 * 119.88145 * 179.71770 * 22 21 20
24 24 C 1.38444 * 120.11424 * 0.57571 * 23 22 21
25 25 Cl 1.73599 * 119.88838 * 179.69732 * 24 23 22
26 26 C 1.38452 * 120.22758 * 359.67273 * 24 23 22
27 27 C 1.37989 * 120.11106 * 0.05235 * 26 24 23
28 28 C 1.47586 * 91.05425 * 24.54926 * 12 11 9
29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3
30 30 H 0.96700 * 113.99800 * 309.66654 * 10 9 7
31 31 H 1.08995 * 113.76496 * 336.35212 * 11 9 7
32 32 H 1.09005 * 113.76577 * 107.74446 * 11 9 7
33 33 H 1.08002 * 126.05531 * 359.97438 * 16 15 13
34 34 H 1.07994 * 120.05642 * 359.97438 * 22 21 20
35 35 H 1.08003 * 119.94276 * 180.25168 * 23 22 21
36 36 H 1.08003 * 119.94730 * 180.02562 * 26 24 23
37 37 H 1.07997 * 120.05771 * 179.97438 * 27 26 24
38 38 H 1.08993 * 113.76952 * 221.15022 * 28 12 11
39 39 H 1.08993 * 113.76905 * 89.74994 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1030 1.6963 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 8 0.2446 -2.5614 -1.0132
11 6 0.7562 -2.9292 1.3924
12 7 1.1919 -4.2900 1.0142
13 6 0.8427 -5.5338 1.3981
14 8 1.3862 -6.4999 0.8977
15 6 -0.1973 -5.7232 2.4237
16 6 -0.8965 -4.7342 3.0844
17 7 -1.7497 -5.3288 3.9319
18 1 -2.3660 -4.8657 4.5206
19 7 -1.6112 -6.7167 3.8426
20 6 -0.6902 -6.9998 2.9495
21 6 -0.2353 -8.3534 2.5497
22 6 0.1278 -8.6070 1.2281
23 6 0.5559 -9.8668 0.8625
24 6 0.6139 -10.8809 1.8032
25 17 1.1460 -12.4657 1.3351
26 6 0.2494 -10.6354 3.1161
27 6 -0.1748 -9.3777 3.4932
28 6 2.1609 -3.7402 0.0462
29 1 -0.4850 0.8401 0.0004
30 1 -0.3474 -1.7969 -1.0267
31 1 1.3275 -2.4975 2.2141
32 1 -0.3215 -2.8326 1.5249
33 1 -0.7794 -3.6700 2.9427
34 1 0.0780 -7.8179 0.4925
35 1 0.8414 -10.0634 -0.1604
36 1 0.2967 -11.4298 3.8463
37 1 -0.4593 -9.1872 4.5175
38 1 2.2027 -4.2899 -0.8940
39 1 3.1456 -3.5472 0.4717
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000188678741.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:17:17
Heat of formation + Delta-G solvation = 33.759959 kcal
Electronic energy + Delta-G solvation = -27262.284588 eV
Core-core repulsion = 23198.111631 eV
Total energy + Delta-G solvation = -4064.172957 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.082 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.31131 -40.80930 -40.05640 -38.74662 -37.45329 -35.75775 -34.10497 -33.77933
-32.18540 -31.92463 -30.71277 -29.72922 -27.11429 -27.00428 -24.57685 -24.17315
-23.45651 -21.59227 -21.08321 -20.36298 -19.33769 -18.70415 -18.04942 -17.58658
-17.08166 -16.63940 -16.61842 -16.30519 -16.12374 -15.96535 -15.60159 -15.07713
-14.79054 -14.61855 -14.52943 -14.40746 -14.10577 -13.70665 -13.61055 -13.36484
-12.87002 -12.75925 -12.67699 -12.63381 -12.60855 -12.22766 -12.16097 -12.11232
-11.74361 -11.33908 -11.01086 -10.86175 -10.59461 -10.20708 -10.02231 -9.96163
-9.45248 -9.32017 -8.23207 -6.38820 -0.24858 0.36233 0.45891 1.08475
1.12308 1.49708 1.53293 1.58753 1.63068 2.03834 2.37527 2.44718
2.70763 3.00105 3.16276 3.51865 3.67787 3.85621 3.92803 4.00243
4.13275 4.21470 4.27773 4.34668 4.50752 4.56236 4.67349 4.68312
4.82168 4.87427 4.93633 5.02272 5.10819 5.23322 5.29715 5.33989
5.49860 5.76590 5.76739 5.98275 6.12948 6.36520 6.66032 6.91953
7.27916 7.35339 7.50090 8.82076
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.019433 B = 0.002557 C = 0.002336
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1440.511050 B =10948.689167 C =11983.269503
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C 0.038 3.962
3 Si 0.962 3.038
4 H -0.284 1.284
5 H -0.268 1.268
6 H -0.279 1.279
7 C -0.555 4.555
8 H 0.069 0.931
9 C 0.221 3.779
10 O -0.585 6.585
11 C 0.087 3.913
12 N -0.630 5.630
13 C 0.598 3.402
14 O -0.581 6.581
15 C -0.302 4.302
16 C 0.130 3.870
17 N -0.443 5.443
18 H 0.463 0.537
19 N -0.289 5.289
20 C 0.156 3.844
21 C -0.039 4.039
22 C -0.054 4.054
23 C -0.125 4.125
24 C -0.026 4.026
25 Cl -0.065 7.065
26 C -0.118 4.118
27 C -0.075 4.075
28 C 0.115 3.885
29 H 0.275 0.725
30 H 0.387 0.613
31 H 0.096 0.904
32 H 0.078 0.922
33 H 0.213 0.787
34 H 0.131 0.869
35 H 0.141 0.859
36 H 0.163 0.837
37 H 0.150 0.850
38 H 0.059 0.941
39 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.523 -12.026 9.693 15.842
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.163 4.163
3 Si 0.788 3.212
4 H -0.209 1.209
5 H -0.193 1.193
6 H -0.205 1.205
7 C -0.593 4.593
8 H 0.087 0.913
9 C 0.180 3.820
10 O -0.397 6.397
11 C -0.036 4.036
12 N -0.363 5.363
13 C 0.390 3.610
14 O -0.464 6.464
15 C -0.317 4.317
16 C -0.022 4.022
17 N -0.151 5.151
18 H 0.312 0.688
19 N -0.110 5.110
20 C -0.013 4.013
21 C -0.041 4.041
22 C -0.074 4.074
23 C -0.144 4.144
24 C -0.053 4.053
25 Cl -0.036 7.036
26 C -0.136 4.136
27 C -0.094 4.094
28 C -0.007 4.007
29 H 0.085 0.915
30 H 0.241 0.759
31 H 0.114 0.886
32 H 0.096 0.904
33 H 0.229 0.771
34 H 0.148 0.852
35 H 0.159 0.841
36 H 0.180 0.820
37 H 0.167 0.833
38 H 0.077 0.923
39 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -3.994 -13.733 10.182 17.556
hybrid contribution 0.468 2.149 -0.528 2.261
sum -3.526 -11.584 9.655 15.486
Atomic orbital electron populations
1.69439 1.06813 1.28848 1.50190 1.25635 0.95740 1.02128 0.92816
0.85547 0.78371 0.78577 0.78748 1.20909 1.19318 1.20459 1.21683
0.94087 0.90836 1.52664 0.91255 1.20076 0.85866 0.91521 0.84578
1.86072 1.47443 1.49594 1.56584 1.24287 1.00187 0.77508 1.01579
1.50000 1.40128 1.04651 1.41505 1.17160 0.81787 0.81260 0.80747
1.90658 1.57737 1.39122 1.58894 1.21248 1.08630 0.92799 1.08978
1.23721 0.89056 1.00175 0.89253 1.45955 1.32046 1.03885 1.33205
0.68832 1.77205 1.20085 0.92401 1.21307 1.21852 0.93375 0.92656
0.93387 1.17916 1.02453 0.89415 0.94340 1.21503 0.93781 0.96143
0.95935 1.21072 1.01382 0.91572 1.00362 1.21167 1.02092 0.86907
0.95145 1.98360 1.88701 1.24024 1.92477 1.21155 1.00101 0.97829
0.94505 1.21296 0.97277 0.91127 0.99723 1.23416 0.93952 0.91909
0.91439 0.91506 0.75886 0.88572 0.90361 0.77121 0.85169 0.84098
0.81989 0.83267 0.92290 0.88201
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -42.59 11.20 21.45 0.24 -42.35 16
2 C 0.04 1.74 5.40 84.66 0.46 2.20 16
3 Si 0.96 37.32 29.54 68.60 2.03 39.35 16
4 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16
5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16
6 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16
7 C -0.55 -25.93 8.61 25.60 0.22 -25.71 16
8 H 0.07 3.18 7.81 -2.91 -0.02 3.16 16
9 C 0.22 9.81 1.40 -10.88 -0.02 9.79 16
10 O -0.59 -28.60 13.49 -148.98 -2.01 -30.60 16
11 C 0.09 3.24 6.57 86.45 0.57 3.81 16
12 N -0.63 -24.79 3.61 -843.65 -3.05 -27.84 16
13 C 0.60 23.67 7.91 86.62 0.68 24.36 16
14 O -0.58 -25.32 13.18 -4.09 -0.05 -25.38 16
15 C -0.30 -10.03 6.26 -18.78 -0.12 -10.15 16
16 C 0.13 3.28 11.09 84.27 0.93 4.21 16
17 N -0.44 -9.32 7.20 -56.43 -0.41 -9.73 16
18 H 0.46 5.65 8.96 -213.54 -1.91 3.73 16
19 N -0.29 -7.83 12.63 -44.52 -0.56 -8.39 16
20 C 0.16 4.89 6.94 44.07 0.31 5.20 16
21 C -0.04 -1.19 5.73 -20.05 -0.11 -1.30 16
22 C -0.05 -1.73 7.77 22.49 0.17 -1.56 16
23 C -0.13 -3.45 9.81 22.26 0.22 -3.23 16
24 C -0.03 -0.62 6.32 22.37 0.14 -0.48 16
25 Cl -0.06 -1.34 28.95 -2.72 -0.08 -1.42 16
26 C -0.12 -2.52 9.81 22.26 0.22 -2.30 16
27 C -0.07 -1.82 9.76 22.49 0.22 -1.60 16
28 C 0.12 4.76 8.23 86.49 0.71 5.47 16
29 H 0.28 12.27 8.31 -92.71 -0.77 11.50 16
30 H 0.39 19.04 6.60 -74.06 -0.49 18.56 16
31 H 0.10 3.35 8.09 -2.39 -0.02 3.33 16
32 H 0.08 2.75 6.30 -2.38 -0.02 2.73 16
33 H 0.21 4.58 5.14 -2.91 -0.01 4.57 16
34 H 0.13 4.85 5.67 -2.91 -0.02 4.84 16
35 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16
36 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16
37 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16
38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16
39 H 0.10 3.78 8.09 -2.39 -0.02 3.76 16
Total: -1.00 -59.30 350.01 -0.53 -59.83
By element:
Atomic # 1 Polarization: 39.04 SS G_CDS: -1.25 Total: 37.79 kcal
Atomic # 6 Polarization: 4.13 SS G_CDS: 4.61 Total: 8.73 kcal
Atomic # 7 Polarization: -84.53 SS G_CDS: -3.78 Total: -88.30 kcal
Atomic # 8 Polarization: -53.92 SS G_CDS: -2.06 Total: -55.98 kcal
Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal
Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal
Total: -59.30 -0.53 -59.83 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000188678741.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.591 kcal
(2) G-P(sol) polarization free energy of solvation -59.296 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.295 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds