Wall clock time and date at job start Wed Apr 1 2020 03:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47398 * 2 1 4 4 H 1.09008 * 109.46980 * 298.65591 * 3 2 1 5 5 C 1.50693 * 109.47465 * 178.65994 * 3 2 1 6 6 H 1.08008 * 119.99840 * 239.72454 * 5 3 2 7 7 C 1.37871 * 120.00463 * 59.99634 * 5 3 2 8 8 N 1.31520 * 120.00217 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00506 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47039 * 59.99951 * 9 7 5 11 11 H 1.48498 * 109.47789 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46865 * 300.00451 * 9 7 5 13 13 N 1.46494 * 109.47164 * 58.65511 * 3 2 1 14 14 S 1.65605 * 120.00088 * 219.16254 * 13 3 2 15 15 O 1.42100 * 106.40105 * 173.12638 * 14 13 3 16 16 O 1.42108 * 106.39942 * 306.03886 * 14 13 3 17 17 C 1.76193 * 107.22080 * 59.57901 * 14 13 3 18 18 C 1.37410 * 123.35922 * 250.29030 * 17 14 13 19 19 C 1.50703 * 122.44093 * 0.02562 * 18 17 14 20 20 C 1.33860 * 115.11296 * 179.80426 * 18 17 14 21 21 S 1.70611 * 110.95964 * 0.45860 * 20 18 17 22 22 C 1.36757 * 123.35287 * 70.58947 * 17 14 13 23 23 C 1.46383 * 125.46386 * 359.95547 * 22 17 14 24 24 O 1.21634 * 120.00167 * 353.77872 * 23 22 17 25 25 O 1.34905 * 119.99888 * 173.77624 * 23 22 17 26 26 C 1.45197 * 116.99828 * 180.02562 * 25 23 22 27 27 H 1.09006 * 109.46954 * 62.62066 * 1 2 3 28 28 H 1.08996 * 109.47219 * 182.61675 * 1 2 3 29 29 H 1.08997 * 109.47131 * 302.62004 * 1 2 3 30 30 H 1.09010 * 109.47504 * 239.99934 * 2 1 3 31 31 H 1.09002 * 109.47378 * 120.00097 * 2 1 3 32 32 H 0.96993 * 120.00468 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00280 * 39.15732 * 13 3 2 34 34 H 1.09002 * 109.47336 * 83.76746 * 19 18 17 35 35 H 1.09007 * 109.47125 * 203.76670 * 19 18 17 36 36 H 1.09000 * 109.47101 * 323.76269 * 19 18 17 37 37 H 1.07996 * 124.51851 * 180.19765 * 20 18 17 38 38 H 1.09000 * 109.47265 * 60.00254 * 26 25 23 39 39 H 1.08997 * 109.47291 * 179.97438 * 26 25 23 40 40 H 1.08997 * 109.47416 * 299.99969 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6965 1.9493 -0.9019 5 6 3.5466 1.4426 0.0332 6 1 4.0687 1.9205 0.8491 7 6 4.2586 0.8376 -0.9806 8 7 3.6230 0.2607 -1.9771 9 14 6.1262 0.8371 -0.9390 10 1 6.5938 0.1462 0.2895 11 1 6.6479 0.1272 -2.1345 12 1 6.6216 2.2371 -0.9386 13 7 1.5255 2.1424 1.1796 14 16 1.0366 3.7200 1.0586 15 8 0.4488 4.0549 2.3083 16 8 2.1277 4.4361 0.4962 17 6 -0.2609 3.7742 -0.1322 18 6 -0.1228 4.3446 -1.3746 19 6 1.1641 4.9805 -1.8338 20 6 -1.2133 4.2902 -2.1491 21 16 -2.4995 3.5159 -1.3385 22 6 -1.5076 3.2580 0.0903 23 6 -1.9458 2.5965 1.3203 24 8 -1.1450 2.3692 2.2072 25 8 -3.2379 2.2388 1.4703 26 6 -3.6012 1.5875 2.7161 27 1 -0.3633 0.4726 -0.9126 28 1 -0.3633 -1.0266 0.0469 29 1 -0.3633 0.5540 0.8655 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.1239 -0.1646 -2.6905 33 1 1.4710 1.6817 2.0315 34 1 1.8303 4.2112 -2.2244 35 1 0.9506 5.7081 -2.6169 36 1 1.6420 5.4821 -0.9923 37 1 -1.2724 4.6876 -3.1515 38 1 -3.3827 2.2530 3.5513 39 1 -4.6659 1.3540 2.7071 40 1 -3.0280 0.6669 2.8255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189674615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:56 Heat of formation + Delta-G solvation = -118.097171 kcal Electronic energy + Delta-G solvation = -28380.591295 eV Core-core repulsion = 24415.028225 eV Total energy + Delta-G solvation = -3965.563070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41426 -38.32881 -36.77418 -36.15802 -35.75699 -35.08232 -32.11776 -31.31997 -30.50582 -28.17222 -27.66137 -26.57631 -24.86514 -23.01124 -21.24668 -20.26739 -20.09051 -18.58128 -18.30993 -17.15737 -16.85731 -16.55062 -16.43504 -16.15166 -15.21323 -14.98184 -14.55086 -14.15201 -13.98159 -13.56219 -13.45627 -13.24584 -13.08145 -12.98592 -12.77559 -12.23182 -12.04903 -11.97342 -11.77079 -11.53620 -11.32017 -11.21670 -11.15873 -10.92995 -10.85361 -10.83203 -10.72342 -10.51087 -10.25670 -10.19214 -9.78522 -9.77021 -9.58061 -9.16928 -8.49517 -8.40151 -8.13707 -6.03410 -4.08932 0.04913 0.99559 1.49900 1.80997 2.07620 2.48697 2.70781 3.35572 3.38438 3.43991 3.89220 4.38576 4.47527 4.60185 4.88160 5.02612 5.10047 5.13141 5.26175 5.33175 5.45262 5.61353 5.74533 5.98880 6.10012 6.14730 6.21112 6.21382 6.35072 6.38413 6.56763 6.81669 6.84824 6.97601 7.15980 7.57838 7.63973 7.69786 7.97232 8.19425 8.29751 8.94567 9.56754 11.01420 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.005109 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.937196 B = 5478.930511 C = 5914.094677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C 0.282 3.718 4 H 0.039 0.961 5 C -0.517 4.517 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.274 1.274 13 N -1.088 6.088 14 S 2.700 3.300 15 O -0.962 6.962 16 O -0.945 6.945 17 C -0.597 4.597 18 C -0.029 4.029 19 C -0.130 4.130 20 C -0.256 4.256 21 S 0.274 5.726 22 C -0.152 4.152 23 C 0.520 3.480 24 O -0.448 6.448 25 O -0.356 6.356 26 C 0.038 3.962 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.102 0.898 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.410 0.590 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.176 0.824 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.359 4.151 0.849 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C 0.177 3.823 4 H 0.057 0.943 5 C -0.557 4.557 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.850 5.850 14 S 2.783 3.217 15 O -0.952 6.952 16 O -0.935 6.935 17 C -0.697 4.697 18 C -0.039 4.039 19 C -0.189 4.189 20 C -0.394 4.394 21 S 0.545 5.455 22 C -0.273 4.273 23 C 0.360 3.640 24 O -0.334 6.334 25 O -0.274 6.274 26 C -0.056 4.056 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.244 0.756 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.194 0.806 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.354 4.435 0.763 16.962 hybrid contribution 1.814 -0.360 0.036 1.850 sum -14.539 4.075 0.798 15.121 Atomic orbital electron populations 1.21925 0.99556 0.99445 1.00142 1.21846 0.91475 0.99647 1.03316 1.18514 0.93388 0.89402 0.80958 0.94290 1.21491 0.90780 1.35285 1.08126 0.91712 1.24886 0.98671 0.95047 0.95167 1.69842 1.35438 1.37173 1.10917 0.86586 0.85357 0.78403 0.77278 1.20275 1.21387 1.19981 1.55350 1.78039 1.31981 1.19626 1.01891 0.73325 0.73872 0.72599 1.93560 1.78540 1.83160 1.39904 1.93541 1.50120 1.70818 1.79051 1.31000 1.14058 1.09157 1.15466 1.18366 0.97664 0.97483 0.90363 1.21236 0.92465 1.01449 1.03767 1.25414 0.98517 1.09516 1.05941 1.82821 1.12021 1.48205 1.02456 1.23211 0.97838 1.07833 0.98420 1.19634 0.81461 0.77310 0.85583 1.91043 1.53264 1.48791 1.40273 1.86523 1.27342 1.71700 1.41789 1.23342 1.01369 0.97553 0.83335 0.94298 0.94608 0.93821 0.87968 0.93829 0.92766 0.75599 0.88989 0.91761 0.87097 0.80644 0.91340 0.87898 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.78 37.16 0.36 -2.56 16 2 C -0.12 -2.76 5.37 -26.73 -0.14 -2.90 16 3 C 0.28 6.71 2.27 -69.09 -0.16 6.55 16 4 H 0.04 0.99 7.59 -51.92 -0.39 0.59 16 5 C -0.52 -13.82 8.84 -34.45 -0.30 -14.13 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.24 11.33 55.43 0.63 -23.61 16 9 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -1.09 -23.27 3.98 -5.89 -0.02 -23.29 16 14 S 2.70 56.42 4.91 -107.50 -0.53 55.90 16 15 O -0.96 -21.20 15.24 -66.93 -1.02 -22.22 16 16 O -0.95 -21.41 14.03 -57.17 -0.80 -22.21 16 17 C -0.60 -10.91 5.48 -40.42 -0.22 -11.13 16 18 C -0.03 -0.47 5.78 -106.46 -0.62 -1.09 16 19 C -0.13 -2.14 9.06 36.01 0.33 -1.82 16 20 C -0.26 -3.37 10.66 29.19 0.31 -3.06 16 21 S 0.27 3.39 22.93 -107.50 -2.47 0.92 16 22 C -0.15 -2.50 6.44 -36.84 -0.24 -2.74 16 23 C 0.52 8.61 7.02 34.01 0.24 8.85 16 24 O -0.45 -8.37 11.33 -27.33 -0.31 -8.68 16 25 O -0.36 -4.77 10.43 -41.06 -0.43 -5.20 16 26 C 0.04 0.37 10.57 101.05 1.07 1.44 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.80 5.45 -51.93 -0.28 0.52 16 30 H 0.10 2.53 6.11 -51.92 -0.32 2.22 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.41 8.22 8.87 -34.47 -0.31 7.91 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.06 0.82 8.09 -51.92 -0.42 0.40 16 36 H 0.11 1.98 5.44 -51.93 -0.28 1.70 16 37 H 0.18 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -31.84 354.31 -9.03 -40.87 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.93 Total: 7.01 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 0.53 Total: -20.96 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.60 Total: -46.90 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -2.56 Total: -58.31 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 59.81 SS G_CDS: -2.99 Total: 56.82 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.84 -9.03 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189674615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.229 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds