Wall clock time and date at job start Wed Apr 1 2020 03:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 N 1.46501 * 109.46800 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00144 * 273.12909 * 4 3 2 6 6 H 1.08001 * 119.99468 * 135.61976 * 5 4 3 7 7 C 1.38807 * 120.00200 * 315.62316 * 5 4 3 8 8 N 1.31626 * 119.99974 * 356.58838 * 7 5 4 9 9 Si 1.86799 * 120.00142 * 176.58997 * 7 5 4 10 10 H 1.48501 * 109.47317 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46814 * 119.99876 * 9 7 5 12 12 H 1.48501 * 109.47172 * 239.99809 * 9 7 5 13 13 S 1.65606 * 119.99956 * 93.13514 * 4 3 2 14 14 O 1.42105 * 106.39992 * 336.45654 * 13 4 3 15 15 O 1.42101 * 106.40101 * 203.53613 * 13 4 3 16 16 C 1.76200 * 107.21925 * 89.99785 * 13 4 3 17 17 C 1.37412 * 123.35751 * 98.31116 * 16 13 4 18 18 C 1.50696 * 122.44247 * 359.95613 * 17 16 13 19 19 C 1.33860 * 115.10908 * 179.97438 * 17 16 13 20 20 S 1.70607 * 110.96429 * 359.97438 * 19 17 16 21 21 C 1.36755 * 123.35502 * 278.28809 * 16 13 4 22 22 C 1.46399 * 125.46026 * 0.05803 * 21 16 13 23 23 O 1.21623 * 120.00432 * 353.82158 * 22 21 16 24 24 O 1.34898 * 119.99615 * 173.82314 * 22 21 16 25 25 C 1.45199 * 117.00002 * 179.97438 * 24 22 21 26 26 H 1.09004 * 109.46926 * 60.00017 * 1 2 3 27 27 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47305 * 300.00207 * 1 2 3 29 29 H 1.09000 * 109.46819 * 239.99773 * 2 1 3 30 30 H 1.08999 * 109.46610 * 120.00315 * 2 1 3 31 31 H 1.08996 * 109.47123 * 59.99681 * 3 2 1 32 32 H 1.08997 * 109.46826 * 299.99715 * 3 2 1 33 33 H 0.96994 * 120.00178 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46837 * 82.31760 * 18 17 16 35 35 H 1.08996 * 109.47290 * 202.31339 * 18 17 16 36 36 H 1.09001 * 109.47551 * 322.32079 * 18 17 16 37 37 H 1.08000 * 124.51396 * 180.02562 * 19 17 16 38 38 H 1.08997 * 109.46978 * 300.00159 * 25 24 22 39 39 H 1.08998 * 109.46802 * 59.99848 * 25 24 22 40 40 H 1.09001 * 109.47055 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1892 1.3777 1.1850 6 1 5.0381 0.7172 1.2829 7 6 3.7918 2.1611 2.2598 8 7 2.7999 3.0150 2.1206 9 14 4.6648 2.0035 3.9037 10 1 5.7371 0.9816 3.7989 11 1 5.2626 3.3115 4.2740 12 1 3.6889 1.5928 4.9450 13 16 4.3337 1.5205 -1.4311 14 8 3.4523 1.0299 -2.4321 15 8 5.6165 0.9617 -1.1833 16 6 4.5947 3.2256 -1.7903 17 6 5.7692 3.8842 -1.5166 18 6 6.9499 3.1998 -0.8775 19 6 5.7879 5.1783 -1.8587 20 16 4.3032 5.6466 -2.5566 21 6 3.6487 4.0254 -2.3697 22 6 2.3063 3.5999 -2.7699 23 8 1.9935 2.4268 -2.6981 24 8 1.4164 4.5090 -3.2185 25 6 0.1047 4.0157 -3.5983 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 2.5224 3.5627 2.8715 34 1 7.5183 2.6680 -1.6406 35 1 7.5882 3.9446 -0.4022 36 1 6.5973 2.4916 -0.1276 37 1 6.6308 5.8376 -1.7131 38 1 0.2093 3.2870 -4.4021 39 1 -0.3685 3.5423 -2.7381 40 1 -0.5116 4.8476 -3.9395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191092028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:05 Heat of formation + Delta-G solvation = -106.954278 kcal Electronic energy + Delta-G solvation = -28656.665961 eV Core-core repulsion = 24691.586084 eV Total energy + Delta-G solvation = -3965.079878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.93916 -37.80739 -36.37424 -36.02305 -35.30898 -34.23515 -32.68170 -30.94933 -30.84160 -27.85156 -27.24908 -25.93409 -24.35246 -23.62856 -20.75024 -20.51787 -19.62794 -18.24491 -18.16049 -16.91194 -16.55500 -16.40538 -15.92725 -15.83350 -14.86585 -14.54192 -14.30903 -13.84660 -13.64774 -13.54008 -13.23727 -13.06258 -12.93788 -12.65293 -12.39464 -11.92889 -11.87087 -11.76633 -11.64321 -11.55436 -11.33741 -11.07142 -10.92276 -10.85149 -10.61165 -10.49771 -10.47648 -10.37912 -10.31362 -10.04630 -9.83065 -9.47684 -9.32586 -9.04584 -8.65265 -8.08052 -7.75158 -6.47296 -4.25514 0.57147 1.62257 2.02762 2.27002 2.53939 2.92245 3.09425 3.15977 3.21486 3.23515 4.00254 4.59923 4.78348 5.07440 5.14750 5.30045 5.32027 5.39621 5.55004 5.66567 5.81689 5.90024 5.93958 5.95030 6.13370 6.27213 6.31611 6.44905 6.49573 6.63306 6.69336 6.76640 6.79982 6.97865 7.02045 7.04559 7.24102 7.47741 7.79550 8.16376 8.35053 8.72790 9.23639 10.41392 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.007050 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.477230 B = 3970.927528 C = 5175.951610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.798 5.798 5 C -0.246 4.246 6 H 0.105 0.895 7 C 0.040 3.960 8 N -0.830 5.830 9 Si 0.918 3.082 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.277 1.277 13 S 2.543 3.457 14 O -0.958 6.958 15 O -0.983 6.983 16 C -0.575 4.575 17 C -0.033 4.033 18 C -0.107 4.107 19 C -0.260 4.260 20 S 0.216 5.784 21 C -0.154 4.154 22 C 0.496 3.504 23 O -0.410 6.410 24 O -0.364 6.364 25 C 0.040 3.960 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.274 0.726 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.167 0.833 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 5.780 -4.578 7.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.012 4.012 4 N -0.623 5.623 5 C -0.393 4.393 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.469 5.469 9 Si 0.743 3.257 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.203 1.203 13 S 2.638 3.362 14 O -0.947 6.947 15 O -0.972 6.972 16 C -0.668 4.668 17 C -0.045 4.045 18 C -0.166 4.166 19 C -0.398 4.398 20 S 0.486 5.514 21 C -0.274 4.274 22 C 0.336 3.664 23 O -0.294 6.294 24 O -0.282 6.282 25 C -0.054 4.054 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.184 0.816 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.398 6.379 -5.908 9.019 hybrid contribution 0.881 -0.257 1.409 1.682 sum -1.517 6.122 -4.499 7.747 Atomic orbital electron populations 1.21635 0.96825 1.00316 1.01139 1.21861 0.94443 0.99470 1.01558 1.21762 0.79439 0.95395 1.04567 1.53288 1.12007 1.78271 1.18774 1.19764 1.13819 1.18906 0.86828 0.87784 1.25943 0.96120 0.93917 1.01246 1.69773 1.24222 1.20314 1.32593 0.85979 0.79872 0.78878 0.80980 1.18401 1.20256 1.20254 1.10387 0.73967 0.75786 0.76048 1.93538 1.63348 1.78354 1.59446 1.93355 1.42004 1.76406 1.85463 1.31979 0.97128 1.32017 1.05634 1.18326 0.95309 0.92525 0.98337 1.20859 0.93976 1.00108 1.01650 1.25253 1.03804 1.00490 1.10206 1.82640 1.04528 1.09278 1.54929 1.23109 0.95724 0.98277 1.10310 1.19967 0.84548 0.84799 0.77084 1.91238 1.76822 1.15391 1.45952 1.86523 1.24414 1.40495 1.76799 1.23228 0.80413 1.00823 1.00965 0.93228 0.93729 0.93173 0.92569 0.92159 0.87146 0.91483 0.91553 0.90739 0.92370 0.87960 0.81561 0.91810 0.91569 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.13 -2.81 6.25 -26.73 -0.17 -2.98 16 3 C 0.11 2.67 4.92 -4.04 -0.02 2.65 16 4 N -0.80 -19.69 2.80 -59.91 -0.17 -19.85 16 5 C -0.25 -6.09 9.02 -15.06 -0.14 -6.22 16 6 H 0.10 2.56 7.55 -52.49 -0.40 2.17 16 7 C 0.04 0.95 5.31 -17.43 -0.09 0.86 16 8 N -0.83 -20.13 10.92 55.49 0.61 -19.52 16 9 Si 0.92 18.45 29.55 -169.99 -5.02 13.43 16 10 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 13 S 2.54 62.81 5.24 -107.50 -0.56 62.24 16 14 O -0.96 -25.00 12.99 -67.56 -0.88 -25.88 16 15 O -0.98 -25.07 13.74 -57.17 -0.79 -25.85 16 16 C -0.57 -12.89 5.98 -40.42 -0.24 -13.13 16 17 C -0.03 -0.67 5.78 -106.46 -0.62 -1.29 16 18 C -0.11 -2.01 8.63 36.00 0.31 -1.70 16 19 C -0.26 -4.35 10.65 29.19 0.31 -4.04 16 20 S 0.22 3.51 22.93 -107.50 -2.47 1.05 16 21 C -0.15 -3.19 6.44 -36.84 -0.24 -3.43 16 22 C 0.50 10.22 7.77 34.01 0.26 10.49 16 23 O -0.41 -9.36 9.01 -27.87 -0.25 -9.61 16 24 O -0.36 -6.19 10.43 -41.03 -0.43 -6.62 16 25 C 0.04 0.51 10.57 101.05 1.07 1.58 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.24 7.98 -51.93 -0.41 0.82 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.11 2.68 5.29 -51.93 -0.27 2.41 16 32 H 0.07 1.58 4.40 -51.93 -0.23 1.36 16 33 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 34 H 0.07 1.34 8.12 -51.93 -0.42 0.91 16 35 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.10 2.17 6.37 -51.93 -0.33 1.84 16 37 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -30.03 351.30 -8.85 -38.88 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.00 Total: 5.75 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 0.81 Total: -19.29 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.44 Total: -39.38 kcal Atomic # 8 Polarization: -65.62 SS G_CDS: -2.34 Total: -67.96 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Atomic # 16 Polarization: 66.32 SS G_CDS: -3.03 Total: 63.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.03 -8.85 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191092028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.077 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds