Wall clock time and date at job start Wed Apr 1 2020 03:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 N 1.46501 * 109.46800 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00144 * 273.12909 * 4 3 2 6 6 H 1.08001 * 119.99468 * 135.61976 * 5 4 3 7 7 C 1.38807 * 120.00200 * 315.62316 * 5 4 3 8 8 N 1.31626 * 119.99974 * 356.58838 * 7 5 4 9 9 Si 1.86799 * 120.00142 * 176.58997 * 7 5 4 10 10 H 1.48501 * 109.47317 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46814 * 119.99876 * 9 7 5 12 12 H 1.48501 * 109.47172 * 239.99809 * 9 7 5 13 13 S 1.65606 * 119.99956 * 93.13514 * 4 3 2 14 14 O 1.42105 * 106.39992 * 336.45654 * 13 4 3 15 15 O 1.42101 * 106.40101 * 203.53613 * 13 4 3 16 16 C 1.76200 * 107.21925 * 89.99785 * 13 4 3 17 17 C 1.37412 * 123.35751 * 98.31116 * 16 13 4 18 18 C 1.50696 * 122.44247 * 359.95613 * 17 16 13 19 19 C 1.33860 * 115.10908 * 179.97438 * 17 16 13 20 20 S 1.70607 * 110.96429 * 359.97438 * 19 17 16 21 21 C 1.36755 * 123.35502 * 278.28809 * 16 13 4 22 22 C 1.46399 * 125.46026 * 0.05803 * 21 16 13 23 23 O 1.21623 * 120.00432 * 353.82158 * 22 21 16 24 24 O 1.34898 * 119.99615 * 173.82314 * 22 21 16 25 25 C 1.45199 * 117.00002 * 179.97438 * 24 22 21 26 26 H 1.09004 * 109.46926 * 60.00017 * 1 2 3 27 27 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47305 * 300.00207 * 1 2 3 29 29 H 1.09000 * 109.46819 * 239.99773 * 2 1 3 30 30 H 1.08999 * 109.46610 * 120.00315 * 2 1 3 31 31 H 1.08996 * 109.47123 * 59.99681 * 3 2 1 32 32 H 1.08997 * 109.46826 * 299.99715 * 3 2 1 33 33 H 0.96994 * 120.00178 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46837 * 82.31760 * 18 17 16 35 35 H 1.08996 * 109.47290 * 202.31339 * 18 17 16 36 36 H 1.09001 * 109.47551 * 322.32079 * 18 17 16 37 37 H 1.08000 * 124.51396 * 180.02562 * 19 17 16 38 38 H 1.08997 * 109.46978 * 300.00159 * 25 24 22 39 39 H 1.08998 * 109.46802 * 59.99848 * 25 24 22 40 40 H 1.09001 * 109.47055 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1892 1.3777 1.1850 6 1 5.0381 0.7172 1.2829 7 6 3.7918 2.1611 2.2598 8 7 2.7999 3.0150 2.1206 9 14 4.6648 2.0035 3.9037 10 1 5.7371 0.9816 3.7989 11 1 5.2626 3.3115 4.2740 12 1 3.6889 1.5928 4.9450 13 16 4.3337 1.5205 -1.4311 14 8 3.4523 1.0299 -2.4321 15 8 5.6165 0.9617 -1.1833 16 6 4.5947 3.2256 -1.7903 17 6 5.7692 3.8842 -1.5166 18 6 6.9499 3.1998 -0.8775 19 6 5.7879 5.1783 -1.8587 20 16 4.3032 5.6466 -2.5566 21 6 3.6487 4.0254 -2.3697 22 6 2.3063 3.5999 -2.7699 23 8 1.9935 2.4268 -2.6981 24 8 1.4164 4.5090 -3.2185 25 6 0.1047 4.0157 -3.5983 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 2.5224 3.5627 2.8715 34 1 7.5183 2.6680 -1.6406 35 1 7.5882 3.9446 -0.4022 36 1 6.5973 2.4916 -0.1276 37 1 6.6308 5.8376 -1.7131 38 1 0.2093 3.2870 -4.4021 39 1 -0.3685 3.5423 -2.7381 40 1 -0.5116 4.8476 -3.9395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191092028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:04 Heat of formation + Delta-G solvation = -125.063450 kcal Electronic energy + Delta-G solvation = -28657.451234 eV Core-core repulsion = 24691.586084 eV Total energy + Delta-G solvation = -3965.865151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.41233 -39.27276 -38.07683 -37.78960 -37.03036 -36.20348 -34.39238 -32.69251 -32.34125 -29.14437 -28.57894 -27.67242 -25.80745 -25.37517 -22.28740 -22.16208 -21.23384 -20.03318 -19.59177 -18.69174 -18.18429 -18.11119 -17.42319 -17.32340 -16.61375 -16.07224 -16.01191 -15.47913 -15.21752 -15.02484 -14.89684 -14.50306 -14.39068 -14.19683 -13.91965 -13.64924 -13.40061 -13.15470 -13.08578 -12.99667 -12.96925 -12.73146 -12.64302 -12.52723 -12.29032 -12.15715 -12.01336 -11.98405 -11.86572 -11.71271 -11.57615 -11.23565 -11.02560 -10.81468 -10.13885 -9.57785 -9.46421 -8.25612 -6.13556 -0.95186 -0.05743 0.50913 0.82351 1.03491 1.49553 1.50860 1.54361 1.64048 1.69950 2.32478 2.79473 2.96582 3.30402 3.63812 3.95605 4.12610 4.19579 4.32371 4.35193 4.37341 4.42419 4.54529 4.57835 4.68462 4.72387 4.82486 4.85610 4.94920 5.12256 5.17006 5.21584 5.29152 5.31018 5.33224 5.44306 5.53599 5.71316 5.96337 6.49528 6.67496 6.90312 7.40710 8.64881 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.007050 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.477230 B = 3970.927528 C = 5175.951610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 C 0.115 3.885 4 N -0.811 5.811 5 C -0.275 4.275 6 H 0.092 0.908 7 C 0.012 3.988 8 N -0.854 5.854 9 Si 0.976 3.024 10 H -0.261 1.261 11 H -0.271 1.271 12 H -0.270 1.270 13 S 2.555 3.445 14 O -0.981 6.981 15 O -1.004 7.004 16 C -0.607 4.607 17 C -0.067 4.067 18 C -0.107 4.107 19 C -0.246 4.246 20 S 0.323 5.677 21 C -0.196 4.196 22 C 0.492 3.508 23 O -0.444 6.444 24 O -0.359 6.359 25 C 0.030 3.970 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.279 0.721 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.211 0.789 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 8.584 -4.618 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.172 4.172 3 C -0.011 4.011 4 N -0.636 5.636 5 C -0.420 4.420 6 H 0.110 0.890 7 C -0.198 4.198 8 N -0.493 5.493 9 Si 0.798 3.202 10 H -0.185 1.185 11 H -0.196 1.196 12 H -0.195 1.195 13 S 2.654 3.346 14 O -0.971 6.971 15 O -0.994 6.994 16 C -0.706 4.706 17 C -0.078 4.078 18 C -0.166 4.166 19 C -0.383 4.383 20 S 0.594 5.406 21 C -0.317 4.317 22 C 0.333 3.667 23 O -0.331 6.331 24 O -0.277 6.277 25 C -0.063 4.063 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.228 0.772 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.403 9.155 -5.926 11.167 hybrid contribution 0.855 -0.917 1.212 1.743 sum -1.548 8.238 -4.715 9.617 Atomic orbital electron populations 1.21580 0.93810 1.02093 1.01615 1.21844 0.97142 0.97948 1.00297 1.21765 0.79142 0.96456 1.03708 1.53177 1.12303 1.79608 1.18556 1.19757 1.14268 1.20210 0.87744 0.89047 1.26530 0.96403 0.93218 1.03664 1.69838 1.24977 1.20861 1.33602 0.85122 0.78891 0.78884 0.77265 1.18482 1.19612 1.19526 1.09281 0.73319 0.76317 0.75665 1.93507 1.63884 1.79594 1.60097 1.93322 1.42665 1.77648 1.85741 1.31524 0.99364 1.30948 1.08715 1.18453 0.94968 0.94042 1.00301 1.20825 0.94280 1.00488 1.00984 1.25831 1.05514 0.99654 1.07346 1.82218 1.02311 1.04540 1.51536 1.23449 0.95942 1.01399 1.10949 1.20164 0.85100 0.84804 0.76592 1.91206 1.77564 1.16839 1.47478 1.86503 1.25483 1.39605 1.76098 1.23641 0.78853 1.02942 1.00848 0.93048 0.91305 0.92340 0.94440 0.92671 0.88100 0.91985 0.91091 0.90842 0.88812 0.91218 0.77168 0.91780 0.92041 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.91 71.98 0.71 -3.88 16 2 C -0.13 -5.80 6.25 30.59 0.19 -5.61 16 3 C 0.12 5.61 4.92 86.38 0.42 6.04 16 4 N -0.81 -41.90 2.80 -343.47 -0.96 -42.86 16 5 C -0.27 -14.17 9.02 84.03 0.76 -13.42 16 6 H 0.09 4.79 7.55 -2.91 -0.02 4.77 16 7 C 0.01 0.56 5.31 84.86 0.45 1.01 16 8 N -0.85 -41.99 10.92 21.65 0.24 -41.76 16 9 Si 0.98 38.03 29.55 68.60 2.03 40.06 16 10 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 11 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 12 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 13 S 2.56 132.25 5.24 -56.49 -0.30 131.95 16 14 O -0.98 -53.90 12.99 -118.07 -1.53 -55.43 16 15 O -1.00 -54.00 13.74 -128.00 -1.76 -55.76 16 16 C -0.61 -27.53 5.98 21.73 0.13 -27.40 16 17 C -0.07 -2.62 5.78 -21.06 -0.12 -2.74 16 18 C -0.11 -3.98 8.63 71.23 0.62 -3.37 16 19 C -0.25 -7.31 10.65 66.82 0.71 -6.60 16 20 S 0.32 9.38 22.93 -56.49 -1.30 8.08 16 21 C -0.20 -8.05 6.44 24.05 0.15 -7.90 16 22 C 0.49 20.36 7.77 69.95 0.54 20.90 16 23 O -0.44 -20.95 9.01 27.57 0.25 -20.70 16 24 O -0.36 -11.75 10.43 -58.12 -0.61 -12.35 16 25 C 0.03 0.72 10.57 113.37 1.20 1.92 16 26 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.74 7.98 -2.39 -0.02 1.72 16 30 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.10 5.09 5.29 -2.39 -0.01 5.08 16 32 H 0.06 3.07 4.40 -2.39 -0.01 3.06 16 33 H 0.28 12.65 8.31 -92.71 -0.77 11.88 16 34 H 0.07 2.65 8.12 -2.39 -0.02 2.63 16 35 H 0.09 2.69 8.08 -2.39 -0.02 2.67 16 36 H 0.07 3.05 6.37 -2.39 -0.02 3.04 16 37 H 0.21 4.29 8.06 -2.91 -0.02 4.26 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -68.80 351.30 2.90 -65.90 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.07 Total: 23.92 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 5.77 Total: -41.04 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -0.73 Total: -84.62 kcal Atomic # 8 Polarization: -140.60 SS G_CDS: -3.65 Total: -144.25 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Atomic # 16 Polarization: 141.62 SS G_CDS: -1.59 Total: 140.03 kcal Total: -68.80 2.90 -65.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191092028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.166 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds