Wall clock time and date at job start Wed Apr 1 2020 04:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 110.54461 * 2 1 4 4 O 1.42105 * 110.53894 * 223.25609 * 2 1 3 5 5 C 1.76199 * 104.44805 * 111.63011 * 2 1 3 6 6 C 1.38254 * 120.00075 * 269.90555 * 5 2 1 7 7 C 1.38204 * 119.99840 * 179.97438 * 6 5 2 8 8 C 1.38262 * 120.00497 * 0.09078 * 7 6 5 9 9 C 1.38207 * 119.99568 * 359.97438 * 8 7 6 10 10 S 1.76198 * 120.00127 * 179.97438 * 9 8 7 11 11 O 1.42107 * 106.39905 * 23.51581 * 10 9 8 12 12 O 1.42099 * 106.40720 * 156.44089 * 10 9 8 13 13 N 1.65607 * 107.21643 * 269.97996 * 10 9 8 14 14 C 1.46496 * 120.00127 * 64.99603 * 13 10 9 15 15 C 1.52999 * 109.47407 * 164.99773 * 14 13 10 16 16 C 1.52998 * 109.47465 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47272 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99850 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00202 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99827 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47060 * 59.99885 * 21 19 17 23 23 H 1.48500 * 109.47146 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47145 * 300.00092 * 21 19 17 25 25 C 1.38220 * 119.99875 * 90.00066 * 5 2 1 26 26 H 1.09004 * 109.47330 * 308.37293 * 1 2 3 27 27 H 1.09002 * 109.47583 * 68.36888 * 1 2 3 28 28 H 1.08996 * 109.47896 * 188.36914 * 1 2 3 29 29 H 1.07997 * 119.99709 * 0.04973 * 6 5 2 30 30 H 1.08000 * 119.99746 * 180.02562 * 7 6 5 31 31 H 1.07991 * 120.00010 * 179.97438 * 8 7 6 32 32 H 0.96998 * 119.99632 * 244.99582 * 13 10 9 33 33 H 1.09000 * 109.47374 * 285.00167 * 14 13 10 34 34 H 1.09004 * 109.46733 * 45.00118 * 14 13 10 35 35 H 1.09000 * 109.47175 * 300.00516 * 15 14 13 36 36 H 1.09002 * 109.46763 * 59.99676 * 15 14 13 37 37 H 1.08992 * 109.47321 * 300.00232 * 16 15 14 38 38 H 1.09004 * 109.46564 * 60.00413 * 16 15 14 39 39 H 0.96999 * 119.99775 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.99660 * 0.26988 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9119 5 6 2.2536 -0.6290 1.5861 6 6 2.4280 0.2375 2.6493 7 6 2.7723 -0.2560 3.8935 8 6 2.9442 -1.6158 4.0746 9 6 2.7712 -2.4818 3.0115 10 16 2.9909 -4.2148 3.2420 11 8 2.7849 -4.4648 4.6257 12 8 2.2428 -4.8541 2.2169 13 7 4.5836 -4.5517 2.9380 14 6 5.6272 -4.0034 3.8076 15 6 6.9423 -4.7434 3.5552 16 6 8.0324 -4.1703 4.4630 17 6 9.3279 -4.8988 4.2139 18 1 9.3697 -5.6911 3.4810 19 6 10.4599 -4.5540 4.9214 20 7 10.4089 -3.5895 5.8142 21 14 12.0658 -5.4565 4.6121 22 1 12.4644 -5.2851 3.1919 23 1 13.1236 -4.9012 5.4942 24 1 11.8860 -6.9012 4.9048 25 6 2.4260 -1.9884 1.7670 26 1 -0.3634 0.6380 0.8057 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3635 -1.0166 0.1496 29 1 2.2940 1.2997 2.5077 30 1 2.9081 0.4208 4.7241 31 1 3.2136 -2.0013 5.0468 32 1 4.8253 -5.1121 2.1841 33 1 5.7597 -2.9431 3.5921 34 1 5.3342 -4.1284 4.8501 35 1 6.8098 -5.8036 3.7707 36 1 7.2352 -4.6184 2.5127 37 1 8.1649 -3.1102 4.2471 38 1 7.7397 -4.2950 5.5055 39 1 11.2054 -3.3467 6.3118 40 1 2.2956 -2.6646 0.9350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264068088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:31 Heat of formation + Delta-G solvation = -124.282333 kcal Electronic energy + Delta-G solvation = -25643.887388 eV Core-core repulsion = 21678.056110 eV Total energy + Delta-G solvation = -3965.831279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.65010 -37.53639 -37.37056 -36.35829 -36.06683 -35.96013 -33.28194 -32.02601 -31.75264 -30.91158 -30.00043 -26.44485 -24.00579 -23.77104 -23.03850 -20.68577 -20.14624 -19.15373 -18.60565 -17.43082 -16.81760 -16.71570 -16.51214 -16.44728 -16.34685 -15.86879 -15.29355 -14.66869 -14.57951 -14.48942 -14.33502 -13.91346 -13.70964 -13.57312 -12.85968 -12.79728 -12.62913 -12.49457 -12.37331 -12.33422 -12.27505 -12.14060 -12.06101 -11.62015 -11.59246 -11.36633 -10.98696 -10.90825 -10.79842 -10.59680 -10.14672 -9.96608 -9.75599 -9.50377 -9.34214 -9.14933 -8.39186 -6.04605 -4.07306 -0.43448 0.09835 0.32333 0.53856 2.35988 2.64756 3.01116 3.31590 3.36102 3.38577 3.45027 3.59685 3.65732 4.08017 4.26664 4.34169 4.39935 4.43013 4.44624 4.54670 4.91039 5.02208 5.12280 5.23671 5.27125 5.31637 5.36312 5.51205 5.58185 5.67511 5.83863 6.01195 6.20271 6.51664 6.70505 6.90292 7.06995 7.59032 7.71430 7.93832 8.35556 8.98907 9.57176 11.06708 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.002574 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.474109 B =10876.586556 C =11655.986859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.501 3.499 3 O -0.934 6.934 4 O -0.930 6.930 5 C -0.685 4.685 6 C 0.026 3.974 7 C -0.156 4.156 8 C 0.035 3.965 9 C -0.696 4.696 10 S 2.694 3.306 11 O -0.952 6.952 12 O -0.961 6.961 13 N -1.110 6.110 14 C 0.110 3.890 15 C -0.116 4.116 16 C 0.022 3.978 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.074 3.926 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.420 0.580 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.711 9.137 -8.162 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.679 3.321 3 O -0.931 6.931 4 O -0.927 6.927 5 C -0.771 4.771 6 C 0.007 3.993 7 C -0.175 4.175 8 C 0.015 3.985 9 C -0.781 4.781 10 S 2.781 3.219 11 O -0.942 6.942 12 O -0.952 6.952 13 N -0.872 5.872 14 C -0.015 4.015 15 C -0.155 4.155 16 C -0.016 4.016 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C 0.055 3.945 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.167 0.833 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -23.735 9.037 -8.258 26.706 hybrid contribution 0.877 -0.122 0.206 0.909 sum -22.858 8.915 -8.052 25.822 Atomic orbital electron populations 1.30238 1.25386 1.12394 1.12047 1.05259 0.78004 0.74739 0.74063 1.93599 1.77367 1.36318 1.85849 1.93622 1.77241 1.61484 1.60401 1.30769 1.20688 1.02875 1.22804 1.21271 0.87044 0.99701 0.91298 1.21489 1.02156 0.95784 0.98101 1.21392 0.85833 0.93461 0.97771 1.31355 1.18033 1.27891 1.00854 1.01958 0.72690 0.73254 0.73973 1.93607 1.84628 1.83271 1.32667 1.93588 1.69377 1.73297 1.58894 1.55476 1.24211 1.64801 1.42760 1.21653 0.88802 0.97729 0.93272 1.21859 0.92654 0.99497 1.01521 1.19071 0.91758 0.96373 0.94386 1.21172 0.94353 1.18756 1.21825 0.92622 1.25017 0.99099 0.95181 0.95108 1.69947 1.29354 1.29405 1.24730 0.86634 0.83059 0.80024 0.78141 1.20230 1.21288 1.20212 1.20732 0.84354 0.93877 0.95586 0.84896 0.84720 0.84679 0.83264 0.83684 0.83020 0.74454 0.92134 0.90363 0.92228 0.92439 0.96337 0.96175 0.92875 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.00 10.80 101.05 1.09 -0.91 16 2 S 2.50 18.90 5.80 -107.50 -0.62 18.28 16 3 O -0.93 -9.62 17.12 -57.54 -0.99 -10.61 16 4 O -0.93 -10.42 17.12 -57.54 -0.99 -11.40 16 5 C -0.68 -6.18 5.66 -39.58 -0.22 -6.40 16 6 C 0.03 0.21 9.47 -39.59 -0.37 -0.16 16 7 C -0.16 -1.31 10.05 -39.58 -0.40 -1.71 16 8 C 0.03 0.35 9.52 -39.58 -0.38 -0.03 16 9 C -0.70 -7.86 5.95 -39.59 -0.24 -8.10 16 10 S 2.69 34.40 5.74 -107.50 -0.62 33.78 16 11 O -0.95 -14.43 16.75 -57.17 -0.96 -15.39 16 12 O -0.96 -13.71 17.29 -57.17 -0.99 -14.70 16 13 N -1.11 -14.33 6.00 -10.61 -0.06 -14.39 16 14 C 0.11 1.69 6.22 -4.04 -0.03 1.66 16 15 C -0.12 -2.19 5.29 -26.73 -0.14 -2.33 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 18 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.07 0.79 8.95 -39.58 -0.35 0.43 16 26 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 27 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 28 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.15 0.83 7.57 -52.49 -0.40 0.43 16 30 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.15 1.36 7.62 -52.49 -0.40 0.96 16 32 H 0.42 4.74 8.65 -34.47 -0.30 4.44 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.19 7.75 -51.93 -0.40 0.79 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.16 1.50 7.13 -52.49 -0.37 1.12 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -38.85 369.38 -10.75 -49.60 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.22 Total: -1.15 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: -1.59 Total: -30.32 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.67 Total: -40.00 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -3.92 Total: -52.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 53.30 SS G_CDS: -1.24 Total: 52.06 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.85 -10.75 -49.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.683 kcal (2) G-P(sol) polarization free energy of solvation -38.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds