Wall clock time and date at job start Wed Apr 1 2020 04:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 110.54461 * 2 1 4 4 O 1.42105 * 110.53894 * 223.25609 * 2 1 3 5 5 C 1.76199 * 104.44805 * 111.63011 * 2 1 3 6 6 C 1.38254 * 120.00075 * 269.90555 * 5 2 1 7 7 C 1.38204 * 119.99840 * 179.97438 * 6 5 2 8 8 C 1.38262 * 120.00497 * 0.09078 * 7 6 5 9 9 C 1.38207 * 119.99568 * 359.97438 * 8 7 6 10 10 S 1.76198 * 120.00127 * 179.97438 * 9 8 7 11 11 O 1.42107 * 106.39905 * 23.51581 * 10 9 8 12 12 O 1.42099 * 106.40720 * 156.44089 * 10 9 8 13 13 N 1.65607 * 107.21643 * 269.97996 * 10 9 8 14 14 C 1.46496 * 120.00127 * 64.99603 * 13 10 9 15 15 C 1.52999 * 109.47407 * 164.99773 * 14 13 10 16 16 C 1.52998 * 109.47465 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47272 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99850 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00202 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99827 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47060 * 59.99885 * 21 19 17 23 23 H 1.48500 * 109.47146 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47145 * 300.00092 * 21 19 17 25 25 C 1.38220 * 119.99875 * 90.00066 * 5 2 1 26 26 H 1.09004 * 109.47330 * 308.37293 * 1 2 3 27 27 H 1.09002 * 109.47583 * 68.36888 * 1 2 3 28 28 H 1.08996 * 109.47896 * 188.36914 * 1 2 3 29 29 H 1.07997 * 119.99709 * 0.04973 * 6 5 2 30 30 H 1.08000 * 119.99746 * 180.02562 * 7 6 5 31 31 H 1.07991 * 120.00010 * 179.97438 * 8 7 6 32 32 H 0.96998 * 119.99632 * 244.99582 * 13 10 9 33 33 H 1.09000 * 109.47374 * 285.00167 * 14 13 10 34 34 H 1.09004 * 109.46733 * 45.00118 * 14 13 10 35 35 H 1.09000 * 109.47175 * 300.00516 * 15 14 13 36 36 H 1.09002 * 109.46763 * 59.99676 * 15 14 13 37 37 H 1.08992 * 109.47321 * 300.00232 * 16 15 14 38 38 H 1.09004 * 109.46564 * 60.00413 * 16 15 14 39 39 H 0.96999 * 119.99775 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.99660 * 0.26988 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9119 5 6 2.2536 -0.6290 1.5861 6 6 2.4280 0.2375 2.6493 7 6 2.7723 -0.2560 3.8935 8 6 2.9442 -1.6158 4.0746 9 6 2.7712 -2.4818 3.0115 10 16 2.9909 -4.2148 3.2420 11 8 2.7849 -4.4648 4.6257 12 8 2.2428 -4.8541 2.2169 13 7 4.5836 -4.5517 2.9380 14 6 5.6272 -4.0034 3.8076 15 6 6.9423 -4.7434 3.5552 16 6 8.0324 -4.1703 4.4630 17 6 9.3279 -4.8988 4.2139 18 1 9.3697 -5.6911 3.4810 19 6 10.4599 -4.5540 4.9214 20 7 10.4089 -3.5895 5.8142 21 14 12.0658 -5.4565 4.6121 22 1 12.4644 -5.2851 3.1919 23 1 13.1236 -4.9012 5.4942 24 1 11.8860 -6.9012 4.9048 25 6 2.4260 -1.9884 1.7670 26 1 -0.3634 0.6380 0.8057 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3635 -1.0166 0.1496 29 1 2.2940 1.2997 2.5077 30 1 2.9081 0.4208 4.7241 31 1 3.2136 -2.0013 5.0468 32 1 4.8253 -5.1121 2.1841 33 1 5.7597 -2.9431 3.5921 34 1 5.3342 -4.1284 4.8501 35 1 6.8098 -5.8036 3.7707 36 1 7.2352 -4.6184 2.5127 37 1 8.1649 -3.1102 4.2471 38 1 7.7397 -4.2950 5.5055 39 1 11.2054 -3.3467 6.3118 40 1 2.2956 -2.6646 0.9350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264068088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:31 Heat of formation + Delta-G solvation = -155.523969 kcal Electronic energy + Delta-G solvation = -25645.242127 eV Core-core repulsion = 21678.056110 eV Total energy + Delta-G solvation = -3967.186018 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35716 -38.49327 -38.21246 -37.42711 -37.08376 -37.04505 -35.18624 -32.75478 -32.65420 -32.45511 -30.29882 -28.22887 -24.84725 -24.72367 -24.44252 -22.26643 -21.01223 -20.05604 -19.35074 -18.59520 -18.47086 -17.52873 -17.33119 -17.22389 -17.10632 -16.91417 -16.49098 -16.16640 -16.01099 -15.56825 -15.12516 -14.47479 -14.30888 -14.10240 -14.01232 -13.96666 -13.78835 -13.58617 -13.54365 -13.33096 -13.25166 -13.20383 -13.19954 -13.05734 -12.77320 -12.54508 -12.35716 -12.25561 -12.06245 -11.75756 -11.63951 -11.40809 -11.17576 -10.86676 -10.54601 -10.51928 -10.43001 -8.19001 -6.29040 -0.96428 -0.78989 -0.51908 -0.21610 1.41742 1.43858 1.51615 1.75429 1.82864 2.12340 2.42330 2.59994 2.94371 3.05261 3.14972 3.23170 3.60652 3.79090 3.84071 3.99047 4.05916 4.09714 4.21073 4.24921 4.36355 4.45995 4.59728 4.65550 4.67195 4.83409 4.95088 4.96287 4.99684 5.16984 5.21128 5.53362 5.54054 5.75459 5.86755 6.00335 6.26030 6.87631 7.39966 8.92507 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.002574 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.474109 B =10876.586556 C =11655.986859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.503 3.497 3 O -0.967 6.967 4 O -0.976 6.976 5 C -0.687 4.687 6 C 0.025 3.975 7 C -0.154 4.154 8 C 0.016 3.984 9 C -0.704 4.704 10 S 2.711 3.289 11 O -0.979 6.979 12 O -0.977 6.977 13 N -1.109 6.109 14 C 0.119 3.881 15 C -0.106 4.106 16 C 0.023 3.977 17 C -0.544 4.544 18 H 0.061 0.939 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.961 3.039 22 H -0.268 1.268 23 H -0.284 1.284 24 H -0.268 1.268 25 C 0.056 3.944 26 H 0.160 0.840 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.177 0.823 30 H 0.174 0.826 31 H 0.157 0.843 32 H 0.427 0.573 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.065 0.935 37 H -0.001 1.001 38 H -0.002 1.002 39 H 0.263 0.737 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.030 9.923 -8.889 28.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.778 4.778 2 S 2.685 3.315 3 O -0.964 6.964 4 O -0.973 6.973 5 C -0.772 4.772 6 C 0.006 3.994 7 C -0.174 4.174 8 C -0.003 4.003 9 C -0.792 4.792 10 S 2.802 3.198 11 O -0.969 6.969 12 O -0.968 6.968 13 N -0.871 5.871 14 C -0.007 4.007 15 C -0.145 4.145 16 C -0.015 4.015 17 C -0.582 4.582 18 H 0.079 0.921 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.786 3.214 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.193 1.193 25 C 0.036 3.964 26 H 0.179 0.821 27 H 0.176 0.824 28 H 0.170 0.830 29 H 0.195 0.805 30 H 0.192 0.808 31 H 0.175 0.825 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.072 0.928 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -25.007 9.767 -8.987 28.311 hybrid contribution 1.161 -0.266 0.412 1.261 sum -23.846 9.501 -8.575 27.063 Atomic orbital electron populations 1.30052 1.18650 1.14456 1.14616 1.05102 0.80388 0.73189 0.72808 1.93553 1.79765 1.37212 1.85909 1.93564 1.79878 1.62388 1.61509 1.30995 1.20205 1.02264 1.23731 1.21711 0.85773 1.01016 0.90851 1.21874 1.00879 0.95379 0.99229 1.21623 0.86536 0.94405 0.97754 1.30984 1.19918 1.26489 1.01851 1.01160 0.72030 0.73664 0.72927 1.93568 1.84895 1.84284 1.34111 1.93560 1.69558 1.74437 1.59217 1.55302 1.23789 1.65271 1.42696 1.21396 0.87657 0.97892 0.93726 1.21631 0.92730 0.99620 1.00525 1.18977 0.92866 0.95329 0.94352 1.21677 0.95755 1.19006 1.21775 0.92111 1.25927 1.02906 0.96015 0.94876 1.70073 1.30393 1.30942 1.25774 0.85555 0.78551 0.78944 0.78323 1.19294 1.20966 1.19312 1.20887 0.85158 0.94948 0.95423 0.82133 0.82378 0.83040 0.80539 0.80820 0.82516 0.73580 0.91079 0.90452 0.92010 0.91668 0.98214 0.98330 0.92789 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -1.48 10.80 113.37 1.22 -0.26 16 2 S 2.50 34.53 5.80 -56.49 -0.33 34.21 16 3 O -0.97 -18.84 17.12 -127.65 -2.19 -21.03 16 4 O -0.98 -21.82 17.12 -127.65 -2.19 -24.00 16 5 C -0.69 -11.49 5.66 22.27 0.13 -11.36 16 6 C 0.03 0.35 9.47 22.27 0.21 0.56 16 7 C -0.15 -2.29 10.05 22.27 0.22 -2.07 16 8 C 0.02 0.31 9.52 22.27 0.21 0.52 16 9 C -0.70 -15.64 5.95 22.27 0.13 -15.51 16 10 S 2.71 69.39 5.74 -56.49 -0.32 69.07 16 11 O -0.98 -29.90 16.75 -128.00 -2.14 -32.05 16 12 O -0.98 -27.89 17.29 -128.00 -2.21 -30.10 16 13 N -1.11 -28.44 6.00 -187.49 -1.12 -29.57 16 14 C 0.12 3.64 6.22 86.38 0.54 4.17 16 15 C -0.11 -4.00 5.29 30.59 0.16 -3.84 16 16 C 0.02 1.14 4.97 29.85 0.15 1.29 16 17 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 19 C 0.00 0.04 5.46 84.65 0.46 0.50 16 20 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 21 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C 0.06 1.15 8.95 22.27 0.20 1.35 16 26 H 0.16 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H 0.16 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.18 1.45 7.57 -2.91 -0.02 1.43 16 30 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.16 2.77 7.62 -2.91 -0.02 2.75 16 32 H 0.43 9.52 8.65 -96.75 -0.84 8.68 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.38 7.75 -2.38 -0.02 2.36 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.16 3.07 7.13 -2.91 -0.02 3.05 16 Total: -1.00 -84.80 369.38 -4.09 -88.90 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.23 Total: 8.77 kcal Atomic # 6 Polarization: -58.46 SS G_CDS: 3.87 Total: -54.59 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -0.84 Total: -84.98 kcal Atomic # 8 Polarization: -98.46 SS G_CDS: -8.73 Total: -107.18 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 103.92 SS G_CDS: -0.65 Total: 103.27 kcal Total: -84.80 -4.09 -88.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.625 kcal (2) G-P(sol) polarization free energy of solvation -84.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds