Wall clock time and date at job start Wed Apr 1 2020 04:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47005 * 224.66525 * 3 2 1 5 5 N 1.46504 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99880 * 270.00471 * 5 4 3 7 7 C 1.50703 * 109.47077 * 269.99336 * 6 5 4 8 8 H 1.08005 * 119.99703 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00292 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47206 * 59.99702 * 11 9 7 13 13 H 1.48496 * 109.47019 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46839 * 299.99831 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21274 * 120.00135 * 180.27973 * 15 5 4 17 17 C 1.50706 * 119.99766 * 0.02562 * 15 5 4 18 18 O 1.42906 * 109.46699 * 179.97438 * 17 15 5 19 19 C 1.35702 * 116.99668 * 179.97438 * 18 17 15 20 20 C 1.38594 * 120.14238 * 359.73155 * 19 18 17 21 21 C 1.38246 * 120.07622 * 179.76601 * 20 19 18 22 22 Cl 1.73608 * 119.81709 * 180.25551 * 21 20 19 23 23 C 1.38656 * 120.36699 * 0.50482 * 21 20 19 24 24 C 1.37775 * 120.28083 * 359.74632 * 23 21 20 25 25 C 1.39743 * 119.91436 * 0.02562 * 24 23 21 26 26 C 1.43199 * 120.17712 * 179.97438 * 25 24 23 27 27 N 9.21875 * 141.12153 * 149.09846 * 2 1 3 28 28 H 1.08994 * 109.46905 * 104.66793 * 3 2 1 29 29 H 1.08996 * 109.47181 * 344.66715 * 3 2 1 30 30 H 1.09001 * 109.46783 * 60.00107 * 4 3 2 31 31 H 1.08996 * 109.47306 * 300.00114 * 4 3 2 32 32 H 1.08997 * 109.47682 * 29.99532 * 6 5 4 33 33 H 1.09004 * 109.47271 * 149.99629 * 6 5 4 34 34 H 0.96999 * 119.99754 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47161 * 299.99737 * 17 15 5 36 36 H 1.09001 * 109.46740 * 59.99879 * 17 15 5 37 37 H 1.07994 * 119.95957 * 359.97438 * 20 19 18 38 38 H 1.08006 * 119.86148 * 179.72218 * 23 21 20 39 39 H 1.08005 * 120.03803 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0268 1.0140 5 7 4.5826 1.0271 1.0145 6 6 5.3149 0.1355 1.9172 7 6 5.5656 0.8404 3.2254 8 1 5.2142 1.8513 3.3700 9 6 6.2436 0.1948 4.2375 10 7 6.6711 -1.0364 4.0615 11 14 6.5538 1.0683 5.8593 12 1 5.2557 1.4403 6.4774 13 1 7.2962 0.1645 6.7742 14 1 7.3554 2.2943 5.6157 15 6 5.2565 1.8476 0.1844 16 8 6.4693 1.8442 0.1812 17 6 4.5031 2.7651 -0.7438 18 8 5.4318 3.5290 -1.5158 19 6 4.9132 4.4103 -2.4080 20 6 3.5397 4.5357 -2.5443 21 6 3.0128 5.4373 -3.4502 22 17 1.2913 5.5937 -3.6106 23 6 3.8517 6.2138 -4.2350 24 6 5.2194 6.0976 -4.1155 25 6 5.7646 5.1933 -3.2002 26 6 7.1853 5.0675 -3.0717 27 7 8.3126 4.9650 -2.9717 28 1 2.9712 0.2610 -0.9941 29 1 2.9718 -0.9902 0.2717 30 1 2.7543 0.7664 2.0082 31 1 2.7538 2.0177 0.7423 32 1 4.7260 -0.7641 2.0962 33 1 6.2675 -0.1383 1.4636 34 1 7.1478 -1.4908 4.7737 35 1 3.8764 2.1728 -1.4106 36 1 3.8764 3.4387 -0.1592 37 1 2.8803 3.9308 -1.9397 38 1 3.4313 6.9124 -4.9433 39 1 5.8692 6.7040 -4.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268469339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:27 Heat of formation + Delta-G solvation = -11.349450 kcal Electronic energy + Delta-G solvation = -26547.975308 eV Core-core repulsion = 22481.846259 eV Total energy + Delta-G solvation = -4066.129048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73658 -40.61186 -38.77879 -37.96378 -37.80029 -37.05826 -36.71042 -34.88907 -32.40009 -32.19144 -31.60866 -30.32111 -28.33242 -25.34018 -25.05774 -24.74578 -23.35359 -20.67280 -20.10640 -18.98267 -18.86864 -18.35338 -17.89460 -17.46056 -17.36773 -16.88140 -16.44270 -16.14037 -15.75777 -15.65148 -15.50396 -14.97153 -14.86889 -14.50026 -14.40040 -14.26512 -14.02431 -13.99443 -13.92963 -13.58758 -13.52197 -13.24456 -12.98340 -12.94119 -12.74982 -12.70347 -12.56243 -12.46335 -12.17908 -11.96208 -11.95974 -11.75445 -11.69958 -10.68045 -10.59266 -10.00985 -9.56853 -9.41599 -8.19587 -6.31517 -0.45213 0.21110 1.01169 1.39241 1.42695 1.46364 1.50862 1.63010 1.64169 1.80895 1.87330 1.88815 2.38361 2.52614 2.70112 2.85833 3.08529 3.14165 3.53942 3.72420 3.79402 3.98811 4.03231 4.04006 4.12400 4.16915 4.25646 4.54888 4.57517 4.76790 4.84965 5.04773 5.07117 5.08350 5.13874 5.31966 5.43473 5.56268 5.82378 6.03878 6.10294 6.48815 6.61710 6.67123 6.78405 7.28572 7.42966 8.87182 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.003168 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.368947 B = 8835.936555 C =10916.927016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.245 3.755 3 C -0.041 4.041 4 C 0.106 3.894 5 N -0.589 5.589 6 C 0.261 3.739 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.259 1.259 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.501 3.499 16 O -0.578 6.578 17 C 0.040 3.960 18 O -0.313 6.313 19 C 0.182 3.818 20 C -0.202 4.202 21 C 0.033 3.967 22 Cl -0.049 7.049 23 C -0.140 4.140 24 C -0.001 4.001 25 C -0.078 4.078 26 C 0.277 3.723 27 N -0.469 5.469 28 H 0.140 0.860 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.042 0.958 33 H 0.002 0.998 34 H 0.265 0.735 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.171 0.829 38 H 0.176 0.824 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.520 13.781 -18.708 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.072 4.072 3 C -0.082 4.082 4 C -0.018 4.018 5 N -0.321 5.321 6 C 0.140 3.860 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.781 3.219 12 H -0.184 1.184 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.288 3.712 16 O -0.457 6.457 17 C -0.037 4.037 18 O -0.224 6.224 19 C 0.132 3.868 20 C -0.221 4.221 21 C 0.005 3.995 22 Cl -0.019 7.019 23 C -0.158 4.158 24 C -0.022 4.022 25 C -0.082 4.082 26 C -0.037 4.037 27 N -0.146 5.146 28 H 0.158 0.842 29 H 0.138 0.862 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.060 0.940 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.188 0.812 38 H 0.193 0.807 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.706 13.407 -18.403 26.576 hybrid contribution 0.551 -0.214 1.396 1.516 sum -13.155 13.193 -17.008 25.226 Atomic orbital electron populations 1.81281 1.14402 1.10320 1.10445 1.29066 0.94830 0.91714 0.91583 1.19858 0.80230 1.04172 1.03959 1.21694 0.78281 1.00785 1.01031 1.47978 1.07107 1.39432 1.37537 1.18847 0.91575 0.88839 0.86749 1.21748 1.36556 1.00542 0.99322 0.92524 1.25709 0.95210 0.95576 1.02263 1.70011 1.39007 1.12790 1.34706 0.85647 0.78811 0.78097 0.79359 1.18369 1.20880 1.20831 1.20681 0.87671 0.81412 0.81391 1.90753 1.16759 1.68489 1.69723 1.23011 0.91045 0.95031 0.94644 1.86196 1.36355 1.50405 1.49463 1.18939 0.91617 0.88242 0.88005 1.21188 0.92469 1.04291 1.04197 1.21055 0.85964 0.96224 0.96214 1.98430 1.09938 1.96799 1.96781 1.21217 0.91583 1.01558 1.01481 1.21264 0.95411 0.92701 0.92777 1.15668 0.82921 1.04971 1.04678 1.25803 0.92898 0.92496 0.92482 1.81275 1.14133 1.09596 1.09579 0.84228 0.86169 0.89164 0.86686 0.93958 0.98018 0.92573 0.84063 0.85159 0.81191 0.80689 0.80553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.79 18.54 20.01 0.37 -11.41 16 2 C 0.25 4.36 15.43 89.44 1.38 5.74 16 3 C -0.04 -0.57 6.03 28.79 0.17 -0.40 16 4 C 0.11 2.10 5.17 86.38 0.45 2.54 16 5 N -0.59 -19.34 2.46 -826.15 -2.03 -21.37 16 6 C 0.26 12.12 5.16 85.63 0.44 12.56 16 7 C -0.54 -28.65 9.39 25.60 0.24 -28.41 16 8 H 0.06 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.01 0.64 5.46 84.65 0.46 1.11 16 10 N -0.93 -53.32 13.29 21.45 0.28 -53.03 16 11 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 12 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 C 0.50 17.30 7.75 87.66 0.68 17.98 16 16 O -0.58 -28.36 16.08 16.03 0.26 -28.10 16 17 C 0.04 0.80 3.77 71.24 0.27 1.07 16 18 O -0.31 -8.22 9.10 -71.18 -0.65 -8.87 16 19 C 0.18 3.36 6.69 22.83 0.15 3.51 16 20 C -0.20 -2.36 8.80 22.36 0.20 -2.16 16 21 C 0.03 0.32 6.32 22.37 0.14 0.46 16 22 Cl -0.05 -0.47 28.94 -2.72 -0.08 -0.55 16 23 C -0.14 -0.95 9.80 22.26 0.22 -0.74 16 24 C 0.00 -0.01 9.75 22.52 0.22 0.21 16 25 C -0.08 -1.41 5.75 -21.19 -0.12 -1.54 16 26 C 0.28 7.48 14.87 88.33 1.31 8.79 16 27 N -0.47 -15.92 18.54 19.01 0.35 -15.57 16 28 H 0.14 1.08 7.22 -2.39 -0.02 1.07 16 29 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.04 8.07 -2.39 -0.02 2.02 16 31 H 0.12 1.37 6.44 -2.39 -0.02 1.36 16 32 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 33 H 0.00 0.09 7.42 -2.38 -0.02 0.08 16 34 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.14 1.44 6.69 -2.39 -0.02 1.43 16 36 H 0.13 1.73 6.94 -2.39 -0.02 1.71 16 37 H 0.17 1.19 6.30 -2.91 -0.02 1.17 16 38 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 39 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -85.10 375.48 7.87 -77.23 By element: Atomic # 1 Polarization: -5.53 SS G_CDS: 1.12 Total: -4.41 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 6.21 Total: 20.74 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -1.02 Total: -101.39 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.39 Total: -36.97 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -85.10 7.87 -77.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268469339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.882 kcal (2) G-P(sol) polarization free energy of solvation -85.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds