Wall clock time and date at job start Wed Apr 1 2020 04:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99875 * 2 1 4 4 H 1.48501 * 109.47407 * 269.99631 * 3 2 1 5 5 H 1.48493 * 109.47407 * 30.00054 * 3 2 1 6 6 H 1.48507 * 109.47160 * 150.00109 * 3 2 1 7 7 C 1.37878 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99395 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00453 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47227 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00008 * 179.97438 * 11 10 9 13 13 O 1.21550 * 119.99966 * 359.97438 * 12 11 10 14 14 C 1.47848 * 120.00150 * 179.97438 * 12 11 10 15 15 C 1.39575 * 120.14487 * 180.02562 * 14 12 11 16 16 C 1.37955 * 119.85263 * 180.27853 * 15 14 12 17 17 C 1.38361 * 120.14138 * 359.49245 * 16 15 14 18 18 C 1.50708 * 119.85196 * 180.25817 * 17 16 15 19 19 S 1.81394 * 109.46961 * 270.24829 * 18 17 16 20 20 O 1.42097 * 108.58412 * 294.48710 * 19 18 17 21 21 O 1.42111 * 108.57868 * 65.51597 * 19 18 17 22 22 C 1.81402 * 101.92040 * 179.97438 * 19 18 17 23 23 F 1.39899 * 109.47417 * 300.00152 * 22 19 18 24 24 F 1.39901 * 109.46967 * 60.00586 * 22 19 18 25 25 C 1.38356 * 120.29644 * 0.50649 * 17 16 15 26 26 C 1.37958 * 120.14423 * 359.75425 * 25 17 16 27 27 H 0.97006 * 119.99882 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46880 * 60.00151 * 9 7 2 29 29 H 1.08998 * 109.47100 * 300.00159 * 9 7 2 30 30 H 1.08997 * 109.47136 * 60.00031 * 10 9 7 31 31 H 1.09007 * 109.47136 * 299.99866 * 10 9 7 32 32 H 0.96996 * 120.00391 * 0.02562 * 11 10 9 33 33 H 1.08002 * 120.07104 * 359.97438 * 15 14 12 34 34 H 1.07998 * 119.92975 * 179.72529 * 16 15 14 35 35 H 1.08997 * 109.46821 * 30.25241 * 18 17 16 36 36 H 1.09000 * 109.46932 * 150.24699 * 18 17 16 37 37 H 1.08998 * 109.47007 * 179.97438 * 22 19 18 38 38 H 1.08006 * 119.93372 * 179.76996 * 25 17 16 39 39 H 1.07997 * 120.07488 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 7 5.4865 -2.6365 0.0011 12 6 6.1604 -3.8037 0.0017 13 8 5.5527 -4.8564 0.0018 14 6 7.6389 -3.8037 0.0024 15 6 8.3398 -5.0107 0.0025 16 6 9.7193 -5.0037 0.0089 17 6 10.4080 -3.8037 0.0046 18 6 11.9151 -3.8037 0.0057 19 16 12.5184 -3.8042 1.7164 20 8 12.1425 -2.5787 2.3295 21 8 12.1425 -5.0303 2.3287 22 6 14.3169 -3.8049 1.4794 23 9 14.6927 -4.9472 0.7645 24 9 14.6935 -2.6626 0.7650 25 6 9.7194 -2.6037 0.0044 26 6 8.3398 -2.5967 0.0034 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6808 0.8906 29 1 3.8752 -0.6796 -0.8894 30 1 3.6585 -3.1501 -0.8903 31 1 3.6578 -3.1506 0.8897 32 1 5.9715 -1.7965 0.0022 33 1 7.8033 -5.9481 0.0025 34 1 10.2629 -5.9369 0.0135 35 1 12.2788 -4.6934 -0.5082 36 1 12.2788 -2.9135 -0.5076 37 1 14.8113 -3.8048 2.4508 38 1 10.2629 -1.6704 0.0048 39 1 7.8034 -1.6593 0.0037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272998790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:41 Heat of formation + Delta-G solvation = -167.473345 kcal Electronic energy + Delta-G solvation = -26897.177675 eV Core-core repulsion = 22375.633107 eV Total energy + Delta-G solvation = -4521.544568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -50.01588 -48.15910 -40.33711 -38.65128 -37.95834 -37.02209 -35.13483 -33.72954 -32.81486 -31.42236 -30.26563 -28.62460 -28.05239 -25.08330 -23.18078 -22.81839 -20.88802 -20.45593 -20.16802 -19.00799 -18.83473 -18.44558 -17.93064 -17.02586 -16.93594 -16.64974 -16.02606 -15.81878 -15.12918 -15.12357 -15.01713 -14.98512 -14.70856 -14.42088 -14.19515 -13.96011 -13.65284 -13.53372 -13.42815 -13.31834 -13.02594 -13.01639 -12.93628 -12.62516 -12.32845 -11.86519 -11.55819 -11.41568 -11.31296 -11.23093 -10.44336 -10.35999 -9.99822 -9.68491 -9.38685 -9.35120 -9.22048 -8.68370 -8.59036 -6.13089 -4.13571 -1.42589 0.48495 0.98815 1.35257 2.46524 2.74588 2.77853 3.06876 3.23576 3.31345 3.32273 3.32414 3.39956 3.54334 3.63980 3.66282 4.03028 4.35654 4.50519 4.53719 4.71084 4.78215 4.97594 5.12211 5.19635 5.36147 5.60534 5.85904 5.91675 5.98696 6.12303 6.15238 6.42915 6.50787 6.63442 7.07817 7.18588 7.63132 7.76878 8.37334 8.44025 8.91046 9.46678 10.99818 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.001988 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.018384 B =14083.522177 C =14956.696112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.129 3.871 11 N -0.718 5.718 12 C 0.546 3.454 13 O -0.538 6.538 14 C -0.108 4.108 15 C -0.061 4.061 16 C -0.105 4.105 17 C -0.086 4.086 18 C -0.543 4.543 19 S 2.383 3.617 20 O -0.882 6.882 21 O -0.883 6.883 22 C -0.221 4.221 23 F -0.168 7.168 24 F -0.168 7.168 25 C -0.103 4.103 26 C -0.087 4.087 27 H 0.265 0.735 28 H 0.023 0.977 29 H 0.018 0.982 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.396 0.604 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.859 -6.811 0.626 34.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.368 5.368 12 C 0.332 3.668 13 O -0.416 6.416 14 C -0.112 4.112 15 C -0.080 4.080 16 C -0.124 4.124 17 C -0.088 4.088 18 C -0.673 4.673 19 S 2.556 3.444 20 O -0.879 6.879 21 O -0.880 6.880 22 C -0.354 4.354 23 F -0.150 7.150 24 F -0.150 7.150 25 C -0.122 4.122 26 C -0.106 4.106 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.231 0.769 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 32.927 -7.431 1.418 33.785 hybrid contribution 1.417 1.422 -0.775 2.151 sum 34.344 -6.009 0.643 34.872 Atomic orbital electron populations 1.69901 1.06290 1.27083 1.50270 1.25006 0.94782 0.99172 0.94353 0.86749 0.80283 0.83533 0.78489 1.20228 1.21250 1.19054 1.20897 0.88559 0.94932 1.51803 0.90573 1.19806 0.98121 0.91207 0.96904 1.21588 0.75403 1.00382 1.01937 1.46289 1.09452 1.07674 1.73376 1.18214 0.86583 0.84509 0.77495 1.90774 1.69681 1.31143 1.50034 1.20349 0.93989 0.94337 1.02478 1.21336 0.93332 0.98416 0.94895 1.21152 0.94400 0.97509 0.99329 1.18941 0.90447 0.94782 1.04624 1.29079 1.02519 1.14038 1.21671 1.10535 0.76484 0.76945 0.80475 1.93698 1.76401 1.44728 1.73094 1.93698 1.76426 1.44706 1.73143 1.33376 1.28196 0.75944 0.97924 1.93080 1.93810 1.48378 1.79713 1.93082 1.93787 1.48363 1.79739 1.21100 0.94379 0.97554 0.99215 1.21419 0.94091 0.97805 0.97235 0.92519 0.95915 0.96375 0.91628 0.91593 0.76938 0.83673 0.84303 0.82707 0.82701 0.82921 0.84311 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.02 -0.51 4.15 -27.89 -0.12 -0.62 16 10 C 0.13 2.57 5.61 -4.04 -0.02 2.54 16 11 N -0.72 -11.55 5.51 -61.25 -0.34 -11.89 16 12 C 0.55 8.87 7.77 -12.33 -0.10 8.77 16 13 O -0.54 -10.64 16.35 5.32 0.09 -10.55 16 14 C -0.11 -1.35 5.87 -104.97 -0.62 -1.97 16 15 C -0.06 -0.68 9.60 -39.19 -0.38 -1.05 16 16 C -0.10 -0.90 9.68 -39.64 -0.38 -1.29 16 17 C -0.09 -0.66 5.15 -104.53 -0.54 -1.20 16 18 C -0.54 -2.25 5.84 36.01 0.21 -2.04 16 19 S 2.38 13.52 4.94 -107.50 -0.53 12.99 16 20 O -0.88 -7.56 18.10 -57.83 -1.05 -8.61 16 21 O -0.88 -7.54 18.10 -57.83 -1.05 -8.59 16 22 C -0.22 -0.89 5.79 101.05 0.59 -0.30 16 23 F -0.17 -0.87 17.33 2.25 0.04 -0.83 16 24 F -0.17 -0.88 17.33 2.25 0.04 -0.84 16 25 C -0.10 -0.85 9.68 -39.64 -0.38 -1.24 16 26 C -0.09 -0.87 9.54 -39.18 -0.37 -1.24 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 29 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.40 5.19 6.51 -40.82 -0.27 4.93 16 33 H 0.15 1.61 7.65 -52.49 -0.40 1.21 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.15 0.25 8.08 -51.93 -0.42 -0.17 16 36 H 0.15 0.25 8.08 -51.92 -0.42 -0.17 16 37 H 0.15 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.14 1.12 6.41 -52.49 -0.34 0.79 16 LS Contribution 361.98 15.07 5.46 5.46 Total: -1.00 -37.27 361.98 -8.09 -45.35 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.31 Total: 0.30 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.54 Total: -12.57 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.44 Total: -38.19 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -2.01 Total: -27.75 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.08 Total: -1.67 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Atomic # 16 Polarization: 13.52 SS G_CDS: -0.53 Total: 12.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.27 -8.09 -45.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272998790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.120 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds