Wall clock time and date at job start Wed Apr 1 2020 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99899 * 3 2 1 5 5 H 1.48505 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99820 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46957 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46770 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99765 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99889 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99902 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99867 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47030 * 180.02562 * 15 14 12 17 17 N 1.46506 * 109.47035 * 180.02562 * 16 15 14 18 18 S 1.65596 * 119.99677 * 165.00247 * 17 16 15 19 19 O 1.42106 * 106.40283 * 178.54151 * 18 17 16 20 20 O 1.42105 * 106.40421 * 311.45913 * 18 17 16 21 21 C 1.76198 * 107.22309 * 65.00118 * 18 17 16 22 22 C 1.33386 * 125.20236 * 89.99215 * 21 18 17 23 23 C 1.38427 * 114.92036 * 179.97438 * 22 21 18 24 24 C 1.33386 * 114.92159 * 0.02562 * 23 22 21 25 25 S 1.75879 * 125.20398 * 269.69841 * 21 18 17 26 26 H 0.97000 * 119.99712 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46531 * 60.00524 * 9 7 2 28 28 H 1.08988 * 109.47359 * 300.00263 * 9 7 2 29 29 H 1.09000 * 109.46944 * 60.00934 * 10 9 7 30 30 H 1.08997 * 109.47281 * 300.00102 * 10 9 7 31 31 H 0.96999 * 120.00184 * 359.97438 * 11 10 9 32 32 H 0.96999 * 120.00047 * 0.02562 * 14 12 11 33 33 H 1.09004 * 109.47074 * 60.00441 * 15 14 12 34 34 H 1.09004 * 109.47714 * 300.00350 * 15 14 12 35 35 H 1.09004 * 109.46930 * 60.00232 * 16 15 14 36 36 H 1.09000 * 109.47312 * 300.00176 * 16 15 14 37 37 H 0.96996 * 120.00063 * 345.00668 * 17 16 15 38 38 H 1.07999 * 122.54429 * 359.97036 * 22 21 18 39 39 H 1.08003 * 122.54021 * 180.02562 * 23 22 21 40 40 H 1.08001 * 125.20201 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 7 1.5128 -4.9308 -0.0024 12 6 2.1867 -6.0980 -0.0031 13 8 3.4026 -6.0979 -0.0027 14 7 1.5128 -7.2652 -0.0031 15 6 2.2453 -8.5339 -0.0044 16 6 1.2511 -9.6968 -0.0048 17 7 1.9836 -10.9656 -0.0054 18 16 1.1980 -12.3754 0.3651 19 8 2.1599 -13.4145 0.2447 20 8 0.4683 -12.1264 1.5588 21 6 0.0030 -12.6546 -0.8993 22 6 0.2192 -13.3380 -2.0242 23 6 -0.8718 -13.4270 -2.8714 24 6 -1.9739 -12.8155 -2.4348 25 16 -1.6593 -12.0811 -0.8679 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6247 -2.5571 0.8895 29 1 2.8726 -3.6047 0.8878 30 1 2.8713 -3.6039 -0.8922 31 1 0.5428 -4.9308 -0.0016 32 1 0.5428 -7.2652 -0.0031 33 1 2.8727 -8.5921 0.8851 34 1 2.8714 -8.5912 -0.8949 35 1 0.6241 -9.6384 -0.8945 36 1 0.6248 -9.6398 0.8855 37 1 2.9288 -10.9798 -0.2228 38 1 1.1732 -13.7878 -2.2565 39 1 -0.8337 -13.9519 -3.8146 40 1 -2.9166 -12.7809 -2.9606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273594740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:01 Heat of formation + Delta-G solvation = -75.542141 kcal Electronic energy + Delta-G solvation = -24421.391123 eV Core-core repulsion = 20489.966129 eV Total energy + Delta-G solvation = -3931.424994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.66874 -38.41601 -37.64446 -36.76192 -36.32648 -34.87221 -33.94865 -32.80640 -30.47485 -29.89671 -28.15324 -25.01893 -24.71619 -23.06064 -21.18913 -20.91985 -20.64332 -19.74151 -19.12777 -18.30704 -17.81948 -16.67852 -16.45762 -16.30644 -15.87979 -15.74698 -15.45637 -14.93014 -14.74973 -14.50717 -14.11353 -13.82505 -13.54330 -13.52182 -13.31260 -13.09913 -12.77348 -12.55720 -12.49759 -12.31737 -12.27778 -12.02061 -11.90208 -11.41367 -11.20450 -11.02117 -10.65590 -10.32798 -10.16228 -10.02143 -9.92571 -9.57569 -9.28794 -9.14333 -9.12655 -8.49731 -8.28405 -6.09672 -4.12322 -0.25814 0.02420 0.86536 1.21826 1.88409 2.42485 3.05717 3.23355 3.31308 3.35067 3.38853 3.53127 4.01667 4.25449 4.31896 4.39239 4.64972 4.65600 4.69086 4.77563 4.91798 5.06435 5.20624 5.27453 5.40665 5.55601 5.65831 5.67930 6.26555 6.36830 6.38334 6.47771 6.76140 6.96107 7.15383 7.55221 7.62372 7.89306 8.24177 8.38172 8.90212 8.95498 9.52397 11.01920 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.001701 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.962599 B =16458.323009 C =17251.354571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.737 5.737 12 C 0.700 3.300 13 O -0.596 6.596 14 N -0.753 5.753 15 C 0.136 3.864 16 C 0.102 3.898 17 N -1.110 6.110 18 S 2.724 3.276 19 O -0.949 6.949 20 O -0.947 6.947 21 C -0.800 4.800 22 C 0.011 3.989 23 C -0.165 4.165 24 C -0.171 4.171 25 S 0.219 5.781 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.394 0.606 32 H 0.396 0.604 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.424 0.576 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 -30.489 -5.315 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.390 5.390 12 C 0.400 3.600 13 O -0.475 6.475 14 N -0.412 5.412 15 C 0.009 3.991 16 C -0.025 4.025 17 N -0.871 5.871 18 S 2.809 3.191 19 O -0.940 6.940 20 O -0.937 6.937 21 C -1.001 5.001 22 C -0.025 4.025 23 C -0.196 4.196 24 C -0.309 4.309 25 S 0.485 5.515 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.230 0.770 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.260 0.740 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.510 -29.993 -3.519 30.697 hybrid contribution 0.207 0.206 -1.937 1.959 sum -5.302 -29.787 -5.456 30.743 Atomic orbital electron populations 1.69944 1.06085 1.26973 1.50351 1.24997 0.94907 0.99416 0.95005 0.86561 0.79498 0.82608 0.78786 1.20116 1.21281 1.20105 1.21012 0.93244 0.90361 1.51395 0.92257 1.19321 0.94248 0.91053 0.97819 1.21614 0.95661 0.80325 1.00713 1.45532 1.09914 1.05270 1.78331 1.15996 0.85597 0.80381 0.78049 1.90902 1.11735 1.86597 1.58241 1.44908 1.09541 1.04454 1.82256 1.21134 0.93733 0.80719 1.03466 1.21489 0.94953 0.82799 1.03209 1.55344 1.21951 1.21268 1.88574 1.01143 0.72802 0.72150 0.72980 1.93618 1.59551 1.54112 1.86677 1.93628 1.73504 1.84854 1.41665 1.35926 1.17988 1.22672 1.23469 1.20085 1.00481 0.92033 0.89920 1.20469 0.92426 1.04161 1.02568 1.26330 1.03368 1.01800 0.99438 1.84374 1.01020 1.50875 1.15269 0.92805 0.95978 0.95932 0.92703 0.92736 0.77300 0.77009 0.90655 0.90889 0.90803 0.89198 0.74049 0.82664 0.83148 0.80773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.94 5.61 -4.04 -0.02 2.92 16 11 N -0.74 -12.48 5.56 -65.22 -0.36 -12.84 16 12 C 0.70 11.61 8.57 -86.92 -0.74 10.87 16 13 O -0.60 -12.37 16.34 5.29 0.09 -12.29 16 14 N -0.75 -8.41 5.56 -65.22 -0.36 -8.77 16 15 C 0.14 1.26 5.82 -4.04 -0.02 1.24 16 16 C 0.10 0.67 6.34 -4.04 -0.03 0.65 16 17 N -1.11 -7.04 6.00 -10.61 -0.06 -7.11 16 18 S 2.72 22.91 5.88 -107.50 -0.63 22.28 16 19 O -0.95 -10.15 17.80 -57.17 -1.02 -11.17 16 20 O -0.95 -10.66 17.38 -57.17 -0.99 -11.65 16 21 C -0.80 -5.83 6.55 29.04 0.19 -5.64 16 22 C 0.01 0.07 9.84 -41.21 -0.41 -0.34 16 23 C -0.17 -0.83 10.18 -41.21 -0.42 -1.25 16 24 C -0.17 -0.82 11.23 29.04 0.33 -0.50 16 25 S 0.22 1.41 23.21 -107.50 -2.50 -1.08 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.57 8.14 -51.94 -0.42 0.15 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.39 5.61 8.49 -40.82 -0.35 5.26 16 32 H 0.40 3.17 8.49 -40.82 -0.35 2.83 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.58 7.75 -51.93 -0.40 0.17 16 37 H 0.42 2.01 8.65 -34.47 -0.30 1.72 16 38 H 0.16 0.71 8.05 -52.49 -0.42 0.29 16 39 H 0.15 0.41 8.06 -52.48 -0.42 -0.01 16 40 H 0.17 0.38 8.06 -52.49 -0.42 -0.04 16 LS Contribution 376.25 15.07 5.67 5.67 Total: -1.00 -37.30 376.25 -11.30 -48.60 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.16 Total: 2.29 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.68 Total: -4.99 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.05 Total: -53.88 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.92 Total: -35.11 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 24.32 SS G_CDS: -3.13 Total: 21.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.30 -11.30 -48.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273594740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.945 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds