Wall clock time and date at job start Wed Apr 1 2020 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99899 * 3 2 1 5 5 H 1.48505 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99820 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46957 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46770 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99765 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99889 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99902 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99867 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47030 * 180.02562 * 15 14 12 17 17 N 1.46506 * 109.47035 * 180.02562 * 16 15 14 18 18 S 1.65596 * 119.99677 * 165.00247 * 17 16 15 19 19 O 1.42106 * 106.40283 * 178.54151 * 18 17 16 20 20 O 1.42105 * 106.40421 * 311.45913 * 18 17 16 21 21 C 1.76198 * 107.22309 * 65.00118 * 18 17 16 22 22 C 1.33386 * 125.20236 * 89.99215 * 21 18 17 23 23 C 1.38427 * 114.92036 * 179.97438 * 22 21 18 24 24 C 1.33386 * 114.92159 * 0.02562 * 23 22 21 25 25 S 1.75879 * 125.20398 * 269.69841 * 21 18 17 26 26 H 0.97000 * 119.99712 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46531 * 60.00524 * 9 7 2 28 28 H 1.08988 * 109.47359 * 300.00263 * 9 7 2 29 29 H 1.09000 * 109.46944 * 60.00934 * 10 9 7 30 30 H 1.08997 * 109.47281 * 300.00102 * 10 9 7 31 31 H 0.96999 * 120.00184 * 359.97438 * 11 10 9 32 32 H 0.96999 * 120.00047 * 0.02562 * 14 12 11 33 33 H 1.09004 * 109.47074 * 60.00441 * 15 14 12 34 34 H 1.09004 * 109.47714 * 300.00350 * 15 14 12 35 35 H 1.09004 * 109.46930 * 60.00232 * 16 15 14 36 36 H 1.09000 * 109.47312 * 300.00176 * 16 15 14 37 37 H 0.96996 * 120.00063 * 345.00668 * 17 16 15 38 38 H 1.07999 * 122.54429 * 359.97036 * 22 21 18 39 39 H 1.08003 * 122.54021 * 180.02562 * 23 22 21 40 40 H 1.08001 * 125.20201 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 7 1.5128 -4.9308 -0.0024 12 6 2.1867 -6.0980 -0.0031 13 8 3.4026 -6.0979 -0.0027 14 7 1.5128 -7.2652 -0.0031 15 6 2.2453 -8.5339 -0.0044 16 6 1.2511 -9.6968 -0.0048 17 7 1.9836 -10.9656 -0.0054 18 16 1.1980 -12.3754 0.3651 19 8 2.1599 -13.4145 0.2447 20 8 0.4683 -12.1264 1.5588 21 6 0.0030 -12.6546 -0.8993 22 6 0.2192 -13.3380 -2.0242 23 6 -0.8718 -13.4270 -2.8714 24 6 -1.9739 -12.8155 -2.4348 25 16 -1.6593 -12.0811 -0.8679 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6247 -2.5571 0.8895 29 1 2.8726 -3.6047 0.8878 30 1 2.8713 -3.6039 -0.8922 31 1 0.5428 -4.9308 -0.0016 32 1 0.5428 -7.2652 -0.0031 33 1 2.8727 -8.5921 0.8851 34 1 2.8714 -8.5912 -0.8949 35 1 0.6241 -9.6384 -0.8945 36 1 0.6248 -9.6398 0.8855 37 1 2.9288 -10.9798 -0.2228 38 1 1.1732 -13.7878 -2.2565 39 1 -0.8337 -13.9519 -3.8146 40 1 -2.9166 -12.7809 -2.9606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273594740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:01 Heat of formation + Delta-G solvation = -106.541312 kcal Electronic energy + Delta-G solvation = -24422.735348 eV Core-core repulsion = 20489.966129 eV Total energy + Delta-G solvation = -3932.769219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97906 -38.86630 -38.36128 -37.59738 -37.09111 -36.48057 -35.02377 -34.68573 -31.58407 -30.90259 -29.19616 -26.55047 -25.44569 -23.91999 -22.85655 -22.03462 -21.45869 -20.25824 -19.68040 -19.53137 -18.57908 -18.40446 -17.29065 -17.10524 -16.97428 -16.75574 -16.47179 -16.08370 -15.86738 -15.52125 -15.30633 -15.02694 -14.86004 -14.26646 -14.23474 -13.90115 -13.55952 -13.50918 -13.35566 -13.26045 -13.19955 -13.18594 -12.88470 -12.70179 -12.55009 -12.51071 -12.18943 -11.85195 -11.67082 -11.49094 -11.21806 -10.71566 -10.57865 -10.36679 -10.33054 -9.70581 -9.58973 -8.21829 -6.31668 -0.83316 -0.48386 0.39734 0.81524 1.43383 1.45849 1.46263 1.53531 1.65164 2.10035 2.18633 2.43494 2.59883 3.13056 3.33647 3.46200 3.62661 4.02351 4.05308 4.29916 4.36663 4.39657 4.45167 4.51723 4.56036 4.84408 4.85238 4.89979 4.95245 5.03819 5.29730 5.34100 5.45890 5.54419 5.63257 5.81682 5.92453 6.06393 6.19989 6.81527 7.15220 7.37440 7.61570 8.89731 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.001701 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.962599 B =16458.323009 C =17251.354571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.732 5.732 12 C 0.699 3.301 13 O -0.639 6.639 14 N -0.731 5.731 15 C 0.134 3.866 16 C 0.107 3.893 17 N -1.103 6.103 18 S 2.742 3.258 19 O -0.977 6.977 20 O -0.980 6.980 21 C -0.816 4.816 22 C 0.011 3.989 23 C -0.174 4.174 24 C -0.158 4.158 25 S 0.194 5.806 26 H 0.265 0.735 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.408 0.592 32 H 0.415 0.585 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.431 0.569 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 -31.140 -6.574 32.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.387 5.387 12 C 0.399 3.601 13 O -0.521 6.521 14 N -0.390 5.390 15 C 0.008 3.992 16 C -0.020 4.020 17 N -0.866 5.866 18 S 2.830 3.170 19 O -0.967 6.967 20 O -0.970 6.970 21 C -1.019 5.019 22 C -0.025 4.025 23 C -0.204 4.204 24 C -0.296 4.296 25 S 0.459 5.541 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.244 0.756 32 H 0.252 0.748 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.269 0.731 38 H 0.185 0.815 39 H 0.193 0.807 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.113 -30.693 -4.761 31.656 hybrid contribution 0.328 0.316 -1.611 1.674 sum -5.786 -30.376 -6.372 31.572 Atomic orbital electron populations 1.70047 1.07469 1.28002 1.51033 1.25858 0.95810 1.03032 0.94510 0.85516 0.78303 0.78230 0.79097 1.19336 1.20672 1.19450 1.21449 0.93620 0.91955 1.51465 0.92298 1.19126 0.94247 0.91588 0.96424 1.21073 0.94613 0.81124 0.99632 1.45194 1.10482 1.04364 1.78666 1.16097 0.85088 0.81225 0.77726 1.90875 1.13776 1.87314 1.60133 1.44685 1.10531 1.03427 1.80316 1.21243 0.94313 0.80464 1.03150 1.21493 0.94328 0.81515 1.04665 1.55110 1.22408 1.20580 1.88539 1.00243 0.72304 0.71835 0.72660 1.93577 1.60629 1.55324 1.87173 1.93584 1.74142 1.85303 1.43957 1.35611 1.18020 1.24582 1.23706 1.20429 1.01509 0.91033 0.89538 1.20770 0.91901 1.04329 1.03365 1.26705 1.04443 1.00344 0.98129 1.84462 1.00845 1.51755 1.17043 0.92580 0.97164 0.97268 0.93899 0.93742 0.75607 0.74828 0.91616 0.90731 0.88463 0.88821 0.73100 0.81531 0.80653 0.78060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.70 13.29 21.45 0.28 -53.42 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -30.22 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.17 5.09 29.85 0.15 1.32 16 10 C 0.16 6.79 5.61 86.38 0.48 7.27 16 11 N -0.73 -24.41 5.56 -478.52 -2.66 -27.07 16 12 C 0.70 22.66 8.57 179.06 1.53 24.20 16 13 O -0.64 -26.48 16.34 -3.99 -0.07 -26.55 16 14 N -0.73 -15.19 5.56 -478.53 -2.66 -17.85 16 15 C 0.13 2.32 5.82 86.38 0.50 2.82 16 16 C 0.11 1.23 6.34 86.38 0.55 1.77 16 17 N -1.10 -12.95 6.00 -187.47 -1.12 -14.07 16 18 S 2.74 45.13 5.88 -56.49 -0.33 44.80 16 19 O -0.98 -20.82 17.80 -128.00 -2.28 -23.09 16 20 O -0.98 -22.16 17.38 -128.00 -2.22 -24.38 16 21 C -0.82 -10.97 6.55 66.72 0.44 -10.53 16 22 C 0.01 0.12 9.84 21.22 0.21 0.33 16 23 C -0.17 -1.26 10.18 21.22 0.22 -1.05 16 24 C -0.16 -1.10 11.23 66.72 0.75 -0.35 16 25 S 0.19 2.24 23.21 -56.49 -1.31 0.93 16 26 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.41 11.22 8.49 -92.71 -0.79 10.43 16 32 H 0.41 5.70 8.49 -92.71 -0.79 4.92 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.09 1.06 7.75 -2.39 -0.02 1.04 16 37 H 0.43 3.75 8.65 -96.75 -0.84 2.91 16 38 H 0.17 1.26 8.05 -2.91 -0.02 1.23 16 39 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 40 H 0.20 0.18 8.06 -2.91 -0.02 0.16 16 Total: -1.00 -80.27 376.25 -6.13 -86.39 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -1.31 Total: 12.38 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.53 Total: -3.37 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -6.16 Total: -112.41 kcal Atomic # 8 Polarization: -69.46 SS G_CDS: -4.57 Total: -74.02 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 47.37 SS G_CDS: -1.64 Total: 45.73 kcal Total: -80.27 -6.13 -86.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273594740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.148 kcal (2) G-P(sol) polarization free energy of solvation -80.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds