Wall clock time and date at job start Wed Apr 1 2020 03:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46881 * 2 1 4 4 H 1.08991 * 109.47447 * 305.56680 * 3 2 1 5 5 C 1.50709 * 109.47003 * 185.56553 * 3 2 1 6 6 H 1.07998 * 119.99834 * 244.99548 * 5 3 2 7 7 C 1.37873 * 119.99590 * 64.99940 * 5 3 2 8 8 N 1.31512 * 120.00430 * 9.03823 * 7 5 3 9 9 Si 1.86807 * 119.99750 * 189.04291 * 7 5 3 10 10 H 1.48491 * 109.46956 * 269.99863 * 9 7 5 11 11 H 1.48494 * 109.46976 * 29.99684 * 9 7 5 12 12 H 1.48495 * 109.47093 * 149.99838 * 9 7 5 13 13 N 1.46501 * 109.46890 * 65.57092 * 3 2 1 14 14 S 1.65606 * 119.99687 * 215.09733 * 13 3 2 15 15 O 1.42103 * 106.40169 * 179.36397 * 14 13 3 16 16 O 1.42101 * 106.40132 * 312.28721 * 14 13 3 17 17 C 1.76204 * 107.21489 * 65.82763 * 14 13 3 18 18 C 1.38261 * 120.00192 * 273.41651 * 17 14 13 19 19 C 1.38208 * 120.00024 * 179.81192 * 18 17 14 20 20 C 1.38257 * 120.00108 * 0.42157 * 19 18 17 21 21 C 1.38221 * 119.99686 * 359.81759 * 20 19 18 22 22 S 1.76197 * 119.99740 * 179.97438 * 21 20 19 23 23 C 1.81400 * 104.44681 * 270.01733 * 22 21 20 24 24 O 1.42108 * 104.27916 * 26.08545 * 22 21 20 25 25 O 1.42101 * 104.27915 * 153.94673 * 22 21 20 26 26 C 1.38219 * 119.99837 * 93.69734 * 17 14 13 27 27 H 1.09006 * 109.46797 * 184.56197 * 1 2 3 28 28 H 1.08997 * 109.47378 * 304.55854 * 1 2 3 29 29 H 1.08998 * 109.47008 * 64.56587 * 1 2 3 30 30 H 1.08997 * 109.47546 * 240.00350 * 2 1 3 31 31 H 1.09000 * 109.47148 * 120.00126 * 2 1 3 32 32 H 0.96997 * 120.00004 * 356.97965 * 8 7 5 33 33 H 0.97001 * 120.00286 * 35.10194 * 13 3 2 34 34 H 1.08003 * 119.99316 * 0.02562 * 18 17 14 35 35 H 1.07997 * 119.99875 * 180.20986 * 19 18 17 36 36 H 1.08000 * 120.00128 * 179.78634 * 20 19 18 37 37 H 1.08998 * 109.47394 * 59.99852 * 23 22 21 38 38 H 1.09001 * 109.47373 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.47266 * 299.99636 * 23 22 21 40 40 H 1.07993 * 119.99627 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 3.5407 1.4448 -0.1378 6 1 4.1565 1.8133 0.6692 7 6 4.1274 0.9764 -1.2942 8 7 3.3836 0.6950 -2.3417 9 14 5.9789 0.7414 -1.3732 10 1 6.6169 1.9940 -1.8519 11 1 6.4938 0.4094 -0.0205 12 1 6.2979 -0.3658 -2.3099 13 7 1.6641 2.0933 1.2576 14 16 1.2650 3.7005 1.2712 15 8 0.9397 4.0218 2.6166 16 8 2.2783 4.3717 0.5350 17 6 -0.2229 3.8762 0.3439 18 6 -0.1674 4.0422 -1.0275 19 6 -1.3347 4.1762 -1.7553 20 6 -2.5576 4.1529 -1.1108 21 6 -2.6130 3.9919 0.2609 22 16 -4.1715 3.9630 1.0823 23 6 -4.4950 5.6982 1.5004 24 8 -5.0825 3.5111 0.0897 25 8 -3.9335 3.2025 2.2589 26 6 -1.4455 3.8540 0.9884 27 1 -0.3633 -1.0245 0.0817 28 1 -0.3634 0.5829 0.8463 29 1 -0.3633 0.4413 -0.9280 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.4185 0.7751 -2.2868 33 1 1.6490 1.5828 2.0823 34 1 0.7881 4.0637 -1.5305 35 1 -1.2914 4.3024 -2.8270 36 1 -3.4697 4.2610 -1.6791 37 1 -4.5274 6.2921 0.5870 38 1 -5.4510 5.7750 2.0183 39 1 -3.7007 6.0701 2.1477 40 1 -1.4887 3.7284 2.0601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273981461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:50 Heat of formation + Delta-G solvation = -149.412566 kcal Electronic energy + Delta-G solvation = -27217.009660 eV Core-core repulsion = 23250.088652 eV Total energy + Delta-G solvation = -3966.921007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38549 -38.49729 -38.20846 -37.99449 -37.04256 -36.98503 -34.24449 -32.74788 -32.49908 -32.44946 -30.29713 -28.10452 -25.04432 -24.73851 -24.47373 -22.20204 -21.06008 -20.09764 -19.44600 -19.10447 -18.53525 -17.45267 -17.35174 -17.15455 -17.09913 -16.88661 -16.20873 -15.68169 -15.66850 -15.20053 -14.99680 -14.95294 -14.42364 -14.09495 -14.00819 -13.96689 -13.62813 -13.52065 -13.36513 -13.27589 -13.19721 -13.17021 -13.04863 -13.04005 -12.64010 -12.44234 -12.26975 -12.09854 -11.92990 -11.88195 -11.75568 -11.68784 -11.41263 -10.86568 -10.48397 -10.45260 -9.95431 -8.55259 -6.28500 -0.95959 -0.70850 -0.50560 -0.22939 1.56199 1.62422 1.76385 1.80557 1.89620 2.19680 2.57946 2.67091 2.94065 3.07436 3.18854 3.31982 3.60953 3.75411 3.82066 4.04759 4.10005 4.22416 4.24271 4.31110 4.35178 4.44094 4.56961 4.61713 4.65036 4.80873 4.89039 4.95280 4.97849 5.10984 5.12763 5.46131 5.50893 5.51818 6.00627 6.16561 6.36840 6.65057 7.44396 8.81186 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.018627 B = 0.003620 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.803547 B = 7732.793538 C = 8033.542709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.272 3.728 4 H 0.022 0.978 5 C -0.617 4.617 6 H 0.044 0.956 7 C -0.017 4.017 8 N -0.928 5.928 9 Si 1.104 2.896 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.279 1.279 13 N -1.096 6.096 14 S 2.698 3.302 15 O -0.987 6.987 16 O -0.983 6.983 17 C -0.698 4.698 18 C 0.015 3.985 19 C -0.153 4.153 20 C 0.030 3.970 21 C -0.684 4.684 22 S 2.508 3.492 23 C -0.624 4.624 24 O -0.963 6.963 25 O -0.974 6.974 26 C 0.058 3.942 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.264 0.736 33 H 0.418 0.582 34 H 0.133 0.867 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.647 9.657 3.971 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.166 3.834 4 H 0.040 0.960 5 C -0.657 4.657 6 H 0.062 0.938 7 C -0.217 4.217 8 N -0.565 5.565 9 Si 0.928 3.072 10 H -0.209 1.209 11 H -0.200 1.200 12 H -0.205 1.205 13 N -0.856 5.856 14 S 2.789 3.211 15 O -0.977 6.977 16 O -0.973 6.973 17 C -0.787 4.787 18 C -0.005 4.005 19 C -0.172 4.172 20 C 0.012 3.988 21 C -0.768 4.768 22 S 2.689 3.311 23 C -0.779 4.779 24 O -0.960 6.960 25 O -0.971 6.971 26 C 0.038 3.962 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.151 0.849 35 H 0.189 0.811 36 H 0.201 0.799 37 H 0.179 0.821 38 H 0.179 0.821 39 H 0.168 0.832 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.399 9.219 3.354 19.109 hybrid contribution -0.667 0.410 0.599 0.986 sum -17.066 9.628 3.953 19.990 Atomic orbital electron populations 1.21798 0.95634 1.01829 1.01127 1.21780 0.95036 0.97744 1.01580 1.18453 0.93939 0.90856 0.80160 0.96000 1.22606 0.92896 1.45573 1.04584 0.93755 1.26846 1.10133 0.93173 0.91542 1.70900 1.07267 1.48151 1.30209 0.83084 0.70669 0.77141 0.76331 1.20868 1.19966 1.20451 1.55194 1.83639 1.29455 1.17328 1.01404 0.73954 0.72954 0.72786 1.93509 1.85589 1.83493 1.35106 1.93571 1.56164 1.73522 1.74063 1.30955 1.19187 1.20221 1.08351 1.21442 1.01002 0.86214 0.91822 1.21801 0.91446 1.01565 1.02366 1.21695 1.00082 0.85005 0.92056 1.31082 1.20423 1.18983 1.06344 1.05047 0.72657 0.79938 0.73437 1.30059 1.14246 1.18740 1.14809 1.93552 1.61551 1.80836 1.60069 1.93562 1.84761 1.69658 1.49163 1.20845 0.89846 0.84728 1.00778 0.91803 0.92487 0.93888 0.92728 0.92228 0.92535 0.74679 0.84895 0.81110 0.79885 0.82099 0.82146 0.83213 0.82172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.86 71.98 0.71 -4.33 16 2 C -0.12 -5.07 5.22 30.59 0.16 -4.91 16 3 C 0.27 12.51 1.77 44.25 0.08 12.59 16 4 H 0.02 1.07 6.37 -2.39 -0.02 1.05 16 5 C -0.62 -33.34 8.77 25.60 0.22 -33.11 16 6 H 0.04 2.47 7.83 -2.91 -0.02 2.45 16 7 C -0.02 -0.91 5.16 84.65 0.44 -0.48 16 8 N -0.93 -52.63 13.02 21.45 0.28 -52.35 16 9 Si 1.10 49.74 29.91 68.60 2.05 51.79 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 N -1.10 -43.44 4.86 -172.52 -0.84 -44.28 16 14 S 2.70 104.08 5.65 -56.49 -0.32 103.76 16 15 O -0.99 -38.33 17.20 -128.00 -2.20 -40.53 16 16 O -0.98 -45.69 17.12 -128.00 -2.19 -47.88 16 17 C -0.70 -22.43 5.88 22.27 0.13 -22.30 16 18 C 0.01 0.44 8.77 22.27 0.20 0.64 16 19 C -0.15 -3.39 10.05 22.27 0.22 -3.17 16 20 C 0.03 0.57 9.47 22.27 0.21 0.78 16 21 C -0.68 -14.48 5.66 22.27 0.13 -14.36 16 22 S 2.51 40.82 5.80 -56.49 -0.33 40.49 16 23 C -0.62 -3.05 10.80 113.37 1.22 -1.83 16 24 O -0.96 -20.27 17.13 -127.65 -2.19 -22.45 16 25 O -0.97 -24.02 17.13 -127.65 -2.19 -26.20 16 26 C 0.06 1.58 8.95 22.27 0.20 1.78 16 27 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.06 1.82 7.65 -2.39 -0.02 1.80 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 2.55 6.31 -2.39 -0.02 2.54 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.26 14.69 6.04 -92.71 -0.56 14.13 16 33 H 0.42 14.53 8.84 -96.74 -0.85 13.68 16 34 H 0.13 4.45 7.55 -2.91 -0.02 4.43 16 35 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.18 2.09 7.57 -2.91 -0.02 2.07 16 37 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.16 4.08 7.05 -2.91 -0.02 4.06 16 Total: -1.00 -81.82 361.59 -3.57 -85.39 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.43 Total: 20.97 kcal Atomic # 6 Polarization: -72.63 SS G_CDS: 3.92 Total: -68.71 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -0.56 Total: -96.63 kcal Atomic # 8 Polarization: -128.30 SS G_CDS: -8.76 Total: -137.07 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Atomic # 16 Polarization: 144.90 SS G_CDS: -0.65 Total: 144.26 kcal Total: -81.82 -3.57 -85.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273981461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.027 kcal (2) G-P(sol) polarization free energy of solvation -81.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds