Wall clock time and date at job start Wed Apr 1 2020 03:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47217 * 67.80899 * 3 2 1 5 5 C 1.36745 * 119.99820 * 269.99868 * 4 3 2 6 6 H 1.08004 * 119.99961 * 42.11357 * 5 4 3 7 7 C 1.39095 * 120.00118 * 222.11482 * 5 4 3 8 8 N 1.31341 * 119.99847 * 16.38090 * 7 5 4 9 9 Si 1.86800 * 120.00135 * 196.38536 * 7 5 4 10 10 H 1.48497 * 109.47142 * 89.99954 * 9 7 5 11 11 H 1.48499 * 109.46959 * 209.99823 * 9 7 5 12 12 H 1.48499 * 109.47143 * 329.99976 * 9 7 5 13 13 C 1.34775 * 119.99978 * 90.00328 * 4 3 2 14 14 O 1.21776 * 120.00131 * 175.31431 * 13 4 3 15 15 C 1.41806 * 120.00093 * 355.30306 * 13 4 3 16 16 C 1.35135 * 119.99954 * 184.28004 * 15 13 4 17 17 C 1.46945 * 119.99940 * 185.40995 * 16 15 13 18 18 C 1.39994 * 120.12372 * 354.68067 * 17 16 15 19 19 C 1.37761 * 119.92170 * 179.77042 * 18 17 16 20 20 Cl 1.73593 * 119.85840 * 180.26515 * 19 18 17 21 21 C 1.39159 * 120.28480 * 0.24620 * 19 18 17 22 22 C 1.39271 * 120.08169 * 359.94604 * 21 19 18 23 23 C 1.38263 * 120.00068 * 0.12033 * 22 21 19 24 24 O 1.36156 * 120.75105 * 180.21241 * 22 21 19 25 25 C 1.43172 * 116.69916 * 342.74643 * 24 22 21 26 26 C 1.53472 * 108.21995 * 46.25607 * 25 24 22 27 27 O 1.36023 * 119.20959 * 179.80755 * 21 19 18 28 28 H 4.40639 * 5.51454 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47153 * 307.80890 * 3 2 1 30 30 H 1.09000 * 109.47247 * 187.80895 * 3 2 1 31 31 H 0.96997 * 120.00377 * 184.89331 * 8 7 5 32 32 H 1.07999 * 119.99570 * 4.28167 * 15 13 4 33 33 H 1.08001 * 120.00511 * 5.40899 * 16 15 13 34 34 H 1.08004 * 120.03806 * 0.04045 * 18 17 16 35 35 H 1.08003 * 120.01805 * 179.90936 * 23 22 21 36 36 H 1.09001 * 109.71725 * 286.57566 * 25 24 22 37 37 H 1.09000 * 109.71160 * 165.93047 * 25 24 22 38 38 H 1.08995 * 109.70889 * 180.47473 * 26 25 24 39 39 H 1.09007 * 109.73977 * 59.87447 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5208 -1.2790 5 6 3.3631 -1.8607 -1.4285 6 1 2.6618 -2.5764 -1.0255 7 6 4.4988 -2.3019 -2.0995 8 7 5.5011 -1.4786 -2.3058 9 14 4.5985 -4.0654 -2.7074 10 1 4.0555 -4.1448 -4.0873 11 1 6.0154 -4.5099 -2.7068 12 1 3.8038 -4.9435 -1.8116 13 6 3.3589 0.3201 -2.3080 14 8 3.8452 -0.0998 -3.3425 15 6 3.0284 1.6937 -2.1863 16 6 3.1722 2.5198 -3.2460 17 6 2.9441 3.9629 -3.0890 18 6 2.4705 4.4711 -1.8736 19 6 2.2626 5.8253 -1.7294 20 17 1.6818 6.4546 -0.2193 21 6 2.5166 6.6910 -2.7889 22 6 2.9841 6.1914 -4.0019 23 6 3.1940 4.8335 -4.1555 24 8 3.2411 7.0266 -5.0461 25 6 2.6653 8.3357 -4.9796 26 6 2.9158 8.8992 -3.5742 27 8 2.2999 8.0237 -2.6237 28 1 -1.0499 0.0001 -0.0002 29 1 3.0096 -0.6292 0.8119 30 1 3.0089 1.0189 0.1396 31 1 6.2624 -1.7641 -2.8346 32 1 2.6617 2.0796 -1.2466 33 1 3.4549 2.1194 -4.2085 34 1 2.2725 3.8029 -1.0486 35 1 3.5552 4.4456 -5.0965 36 1 1.5930 8.2758 -5.1659 37 1 3.1329 8.9812 -5.7231 38 1 2.4789 9.8946 -3.4940 39 1 3.9879 8.9521 -3.3844 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281019516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:38 Heat of formation + Delta-G solvation = 15.336719 kcal Electronic energy + Delta-G solvation = -26876.249876 eV Core-core repulsion = 22778.985276 eV Total energy + Delta-G solvation = -4097.264600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.076 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42613 -38.84259 -38.05291 -37.53688 -36.39631 -34.83367 -33.40345 -32.42914 -31.29816 -30.93663 -30.22291 -28.19770 -26.52834 -25.63114 -24.61312 -22.91288 -22.35649 -20.56917 -18.96947 -18.65817 -17.89986 -17.66380 -17.03303 -16.82371 -15.96892 -15.71856 -15.28212 -15.01816 -14.81645 -14.54192 -14.50085 -14.25367 -13.97886 -13.91075 -13.49389 -12.85684 -12.58540 -12.47987 -12.43866 -12.29399 -11.94075 -11.55795 -11.35194 -11.26747 -11.12387 -10.93941 -10.88598 -10.73124 -10.66255 -10.32485 -9.93999 -9.64218 -9.26205 -8.90593 -8.56100 -8.14803 -7.69340 -7.23973 -6.13786 -3.91540 0.66491 1.06547 2.01962 2.26427 2.80652 2.92681 3.24618 3.31291 3.36314 3.38151 3.40874 3.64371 3.93095 4.30761 4.46215 4.48588 4.56361 4.72004 4.80448 4.84321 5.00848 5.11570 5.12345 5.13098 5.26317 5.31660 5.41214 5.61592 5.80977 5.87635 5.96675 6.12940 6.27177 6.30045 6.46582 6.49929 6.60076 6.93025 6.99756 7.13478 7.54993 8.13154 8.19444 8.94827 9.09181 9.55051 10.22417 10.89827 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.002787 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.602301 B =10045.412228 C =11402.013586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C 0.202 3.798 4 N -0.438 5.438 5 C -0.337 4.337 6 H 0.082 0.918 7 C 0.064 3.936 8 N -0.809 5.809 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.482 3.518 14 O -0.524 6.524 15 C -0.144 4.144 16 C -0.090 4.090 17 C -0.018 4.018 18 C -0.106 4.106 19 C -0.024 4.024 20 Cl -0.055 7.055 21 C 0.046 3.954 22 C 0.064 3.936 23 C -0.101 4.101 24 O -0.302 6.302 25 C 0.020 3.980 26 C 0.020 3.980 27 O -0.297 6.297 28 H 0.210 0.790 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.266 0.734 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.107 20.062 -0.116 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.177 4.177 3 C 0.078 3.922 4 N -0.159 5.159 5 C -0.464 4.464 6 H 0.100 0.900 7 C -0.148 4.148 8 N -0.442 5.442 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.274 3.726 14 O -0.404 6.404 15 C -0.166 4.166 16 C -0.111 4.111 17 C -0.019 4.019 18 C -0.124 4.124 19 C -0.052 4.052 20 Cl -0.026 7.026 21 C 0.000 4.000 22 C 0.019 3.981 23 C -0.120 4.120 24 O -0.217 6.217 25 C -0.056 4.056 26 C -0.056 4.056 27 O -0.211 6.211 28 H 0.227 0.773 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.642 19.932 -0.541 20.722 hybrid contribution -0.238 -0.410 -0.158 0.500 sum -5.880 19.522 -0.700 20.400 Atomic orbital electron populations 1.24724 0.95739 1.02723 1.01598 1.24235 0.95402 0.98807 0.99245 1.18636 0.82903 1.00029 0.90638 1.43278 1.58182 1.07371 1.07043 1.19147 1.05462 0.80845 1.40934 0.90019 1.25247 0.93648 0.98555 0.97366 1.69879 1.05450 1.36399 1.32458 0.86193 0.77165 0.83108 0.79645 1.20326 1.21159 1.19740 1.16626 0.85496 0.85667 0.84790 1.90675 1.43477 1.77917 1.28300 1.22602 0.99461 0.95898 0.98594 1.21926 0.99995 0.88844 1.00359 1.18760 0.97529 0.93809 0.91801 1.21144 1.00418 0.92163 0.98710 1.19925 1.06041 0.92364 0.86853 1.98361 1.87070 1.87409 1.29777 1.18539 1.05175 0.83881 0.92453 1.18544 1.03035 0.90794 0.85759 1.20686 1.02290 0.88762 1.00269 1.86366 1.70892 1.24018 1.40422 1.23650 1.00173 0.83294 0.98479 1.23651 0.99613 0.94104 0.88205 1.86343 1.70004 1.12848 1.51891 0.77318 0.88586 0.89908 0.92331 0.87031 0.84574 0.83626 0.83739 0.90359 0.85989 0.85992 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.71 19.25 29.55 0.57 -3.14 16 2 C -0.18 -3.22 13.60 -37.12 -0.51 -3.73 16 3 C 0.20 3.91 5.48 -6.83 -0.04 3.88 16 4 N -0.44 -10.84 2.47 -121.13 -0.30 -11.14 16 5 C -0.34 -9.12 9.27 -15.04 -0.14 -9.26 16 6 H 0.08 2.15 7.89 -52.48 -0.41 1.74 16 7 C 0.06 1.77 4.46 -17.44 -0.08 1.69 16 8 N -0.81 -23.53 11.20 55.50 0.62 -22.91 16 9 Si 0.91 21.47 29.59 -169.99 -5.03 16.45 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.48 12.18 6.82 -14.90 -0.10 12.08 16 14 O -0.52 -15.32 13.32 5.12 0.07 -15.25 16 15 C -0.14 -2.87 8.42 -39.32 -0.33 -3.21 16 16 C -0.09 -1.62 9.40 -37.16 -0.35 -1.97 16 17 C -0.02 -0.28 5.86 -105.08 -0.62 -0.89 16 18 C -0.11 -1.51 9.17 -39.10 -0.36 -1.87 16 19 C -0.02 -0.34 6.32 -39.41 -0.25 -0.59 16 20 Cl -0.06 -0.70 28.44 -51.86 -1.47 -2.18 16 21 C 0.05 0.61 6.51 -38.86 -0.25 0.36 16 22 C 0.06 0.85 6.48 -39.19 -0.25 0.60 16 23 C -0.10 -1.42 9.70 -38.94 -0.38 -1.79 16 24 O -0.30 -3.52 10.41 -32.98 -0.34 -3.86 16 25 C 0.02 0.15 7.26 37.40 0.27 0.42 16 26 C 0.02 0.15 7.26 37.40 0.27 0.42 16 27 O -0.30 -3.47 9.81 -32.56 -0.32 -3.79 16 28 H 0.21 2.53 7.80 -54.10 -0.42 2.11 16 29 H 0.10 1.77 8.04 -51.93 -0.42 1.36 16 30 H 0.08 1.40 6.24 -51.93 -0.32 1.07 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.11 1.91 4.17 -52.49 -0.22 1.69 16 33 H 0.14 2.60 7.48 -52.49 -0.39 2.20 16 34 H 0.15 1.96 6.18 -52.48 -0.32 1.64 16 35 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -34.09 358.56 -7.67 -41.76 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.76 Total: 2.55 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.54 Total: -7.02 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.32 Total: -34.06 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.59 Total: -22.91 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.47 Total: -2.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.09 -7.67 -41.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281019516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.099 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds