Wall clock time and date at job start Wed Apr 1 2020 03:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47217 * 67.80899 * 3 2 1 5 5 C 1.36745 * 119.99820 * 269.99868 * 4 3 2 6 6 H 1.08004 * 119.99961 * 42.11357 * 5 4 3 7 7 C 1.39095 * 120.00118 * 222.11482 * 5 4 3 8 8 N 1.31341 * 119.99847 * 16.38090 * 7 5 4 9 9 Si 1.86800 * 120.00135 * 196.38536 * 7 5 4 10 10 H 1.48497 * 109.47142 * 89.99954 * 9 7 5 11 11 H 1.48499 * 109.46959 * 209.99823 * 9 7 5 12 12 H 1.48499 * 109.47143 * 329.99976 * 9 7 5 13 13 C 1.34775 * 119.99978 * 90.00328 * 4 3 2 14 14 O 1.21776 * 120.00131 * 175.31431 * 13 4 3 15 15 C 1.41806 * 120.00093 * 355.30306 * 13 4 3 16 16 C 1.35135 * 119.99954 * 184.28004 * 15 13 4 17 17 C 1.46945 * 119.99940 * 185.40995 * 16 15 13 18 18 C 1.39994 * 120.12372 * 354.68067 * 17 16 15 19 19 C 1.37761 * 119.92170 * 179.77042 * 18 17 16 20 20 Cl 1.73593 * 119.85840 * 180.26515 * 19 18 17 21 21 C 1.39159 * 120.28480 * 0.24620 * 19 18 17 22 22 C 1.39271 * 120.08169 * 359.94604 * 21 19 18 23 23 C 1.38263 * 120.00068 * 0.12033 * 22 21 19 24 24 O 1.36156 * 120.75105 * 180.21241 * 22 21 19 25 25 C 1.43172 * 116.69916 * 342.74643 * 24 22 21 26 26 C 1.53472 * 108.21995 * 46.25607 * 25 24 22 27 27 O 1.36023 * 119.20959 * 179.80755 * 21 19 18 28 28 H 4.40639 * 5.51454 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47153 * 307.80890 * 3 2 1 30 30 H 1.09000 * 109.47247 * 187.80895 * 3 2 1 31 31 H 0.96997 * 120.00377 * 184.89331 * 8 7 5 32 32 H 1.07999 * 119.99570 * 4.28167 * 15 13 4 33 33 H 1.08001 * 120.00511 * 5.40899 * 16 15 13 34 34 H 1.08004 * 120.03806 * 0.04045 * 18 17 16 35 35 H 1.08003 * 120.01805 * 179.90936 * 23 22 21 36 36 H 1.09001 * 109.71725 * 286.57566 * 25 24 22 37 37 H 1.09000 * 109.71160 * 165.93047 * 25 24 22 38 38 H 1.08995 * 109.70889 * 180.47473 * 26 25 24 39 39 H 1.09007 * 109.73977 * 59.87447 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5208 -1.2790 5 6 3.3631 -1.8607 -1.4285 6 1 2.6618 -2.5764 -1.0255 7 6 4.4988 -2.3019 -2.0995 8 7 5.5011 -1.4786 -2.3058 9 14 4.5985 -4.0654 -2.7074 10 1 4.0555 -4.1448 -4.0873 11 1 6.0154 -4.5099 -2.7068 12 1 3.8038 -4.9435 -1.8116 13 6 3.3589 0.3201 -2.3080 14 8 3.8452 -0.0998 -3.3425 15 6 3.0284 1.6937 -2.1863 16 6 3.1722 2.5198 -3.2460 17 6 2.9441 3.9629 -3.0890 18 6 2.4705 4.4711 -1.8736 19 6 2.2626 5.8253 -1.7294 20 17 1.6818 6.4546 -0.2193 21 6 2.5166 6.6910 -2.7889 22 6 2.9841 6.1914 -4.0019 23 6 3.1940 4.8335 -4.1555 24 8 3.2411 7.0266 -5.0461 25 6 2.6653 8.3357 -4.9796 26 6 2.9158 8.8992 -3.5742 27 8 2.2999 8.0237 -2.6237 28 1 -1.0499 0.0001 -0.0002 29 1 3.0096 -0.6292 0.8119 30 1 3.0089 1.0189 0.1396 31 1 6.2624 -1.7641 -2.8346 32 1 2.6617 2.0796 -1.2466 33 1 3.4549 2.1194 -4.2085 34 1 2.2725 3.8029 -1.0486 35 1 3.5552 4.4456 -5.0965 36 1 1.5930 8.2758 -5.1659 37 1 3.1329 8.9812 -5.7231 38 1 2.4789 9.8946 -3.4940 39 1 3.9879 8.9521 -3.3844 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281019516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:38 Heat of formation + Delta-G solvation = -4.854014 kcal Electronic energy + Delta-G solvation = -26877.125412 eV Core-core repulsion = 22778.985276 eV Total energy + Delta-G solvation = -4098.140136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.076 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33755 -40.55517 -39.21804 -38.43500 -37.42989 -36.58716 -34.92450 -34.02511 -32.94002 -31.90053 -31.30732 -29.32717 -28.18300 -26.99309 -25.91204 -24.17495 -23.54928 -21.81388 -20.27119 -19.77691 -19.37917 -18.74135 -18.41377 -17.95127 -17.65127 -16.84615 -16.60947 -16.19031 -15.98696 -15.80531 -15.67361 -15.48006 -15.29654 -15.22940 -14.48162 -14.40351 -14.22750 -14.08600 -13.60477 -13.44319 -13.26215 -12.97949 -12.83115 -12.74127 -12.54307 -12.44763 -12.10522 -12.00231 -11.92921 -11.58068 -11.42066 -11.02467 -10.85351 -10.55988 -10.10795 -9.60301 -9.22747 -8.91649 -8.16600 -5.99630 -0.55972 -0.00634 0.92470 0.98069 1.40872 1.47117 1.52930 1.88068 1.93897 2.02397 2.11646 2.40784 2.47168 2.96879 3.19876 3.25055 3.34984 3.58293 3.66444 3.75563 3.89040 4.00407 4.01632 4.10037 4.17453 4.30395 4.47645 4.55088 4.60870 4.64001 4.77200 4.80351 4.82178 4.98321 5.20048 5.27190 5.42041 5.51829 5.55391 5.75085 6.19221 6.21074 6.80749 6.98653 7.17604 7.62165 8.32349 8.87137 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.002787 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.602301 B =10045.412228 C =11402.013586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.226 4.226 3 C 0.203 3.797 4 N -0.456 5.456 5 C -0.359 4.359 6 H 0.081 0.919 7 C 0.016 3.984 8 N -0.850 5.850 9 Si 0.971 3.029 10 H -0.289 1.289 11 H -0.280 1.280 12 H -0.254 1.254 13 C 0.479 3.521 14 O -0.580 6.580 15 C -0.177 4.177 16 C -0.050 4.050 17 C -0.041 4.041 18 C -0.097 4.097 19 C -0.038 4.038 20 Cl -0.045 7.045 21 C 0.059 3.941 22 C 0.061 3.939 23 C -0.097 4.097 24 O -0.314 6.314 25 C 0.013 3.987 26 C 0.012 3.988 27 O -0.307 6.307 28 H 0.250 0.750 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.260 0.740 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.084 0.916 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 22.934 0.057 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.227 4.227 3 C 0.081 3.919 4 N -0.175 5.175 5 C -0.486 4.486 6 H 0.098 0.902 7 C -0.192 4.192 8 N -0.485 5.485 9 Si 0.796 3.204 10 H -0.216 1.216 11 H -0.206 1.206 12 H -0.178 1.178 13 C 0.272 3.728 14 O -0.463 6.463 15 C -0.197 4.197 16 C -0.071 4.071 17 C -0.042 4.042 18 C -0.116 4.116 19 C -0.066 4.066 20 Cl -0.016 7.016 21 C 0.012 3.988 22 C 0.015 3.985 23 C -0.116 4.116 24 O -0.229 6.229 25 C -0.062 4.062 26 C -0.062 4.062 27 O -0.221 6.221 28 H 0.266 0.734 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.103 0.897 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.368 22.830 -0.322 23.991 hybrid contribution 0.137 -0.856 -0.295 0.916 sum -7.231 21.974 -0.617 23.141 Atomic orbital electron populations 1.25636 0.96548 1.00156 0.98770 1.24133 0.95616 1.01221 1.01764 1.18657 0.84130 1.00929 0.88209 1.43443 1.58468 1.06793 1.08843 1.19338 1.05383 0.82329 1.41596 0.90154 1.26073 0.93424 1.02117 0.97539 1.69988 1.06073 1.38331 1.34113 0.85289 0.77436 0.79219 0.78471 1.21614 1.20580 1.17765 1.17389 0.83821 0.87530 0.84101 1.90623 1.45915 1.79353 1.30377 1.22331 1.03161 0.93553 1.00685 1.21996 0.95794 0.90362 0.98942 1.18508 1.00414 0.92155 0.93149 1.21183 0.99447 0.92686 0.98293 1.19985 1.06644 0.92316 0.87634 1.98362 1.86943 1.87208 1.29099 1.18665 1.03155 0.84885 0.92054 1.18509 1.02772 0.90816 0.86365 1.20801 1.01331 0.89339 1.00118 1.86358 1.71189 1.25631 1.39741 1.24059 1.00912 0.81691 0.99517 1.24071 1.00144 0.94742 0.87245 1.86340 1.70197 1.12165 1.53398 0.73399 0.88541 0.87841 0.93066 0.84264 0.86196 0.83028 0.83027 0.89742 0.82399 0.82294 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.79 19.25 74.32 1.43 -4.36 16 2 C -0.23 -8.13 13.60 31.13 0.42 -7.71 16 3 C 0.20 8.02 5.48 84.57 0.46 8.48 16 4 N -0.46 -23.34 2.47 -655.33 -1.62 -24.96 16 5 C -0.36 -20.15 9.27 84.13 0.78 -19.37 16 6 H 0.08 4.37 7.89 -2.91 -0.02 4.35 16 7 C 0.02 0.92 4.46 84.97 0.38 1.30 16 8 N -0.85 -51.99 11.20 21.69 0.24 -51.74 16 9 Si 0.97 45.69 29.59 68.60 2.03 47.72 16 10 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.25 -11.00 7.11 99.48 0.71 -10.29 16 13 C 0.48 25.17 6.82 85.12 0.58 25.75 16 14 O -0.58 -35.69 13.32 -4.59 -0.06 -35.75 16 15 C -0.18 -7.18 8.42 22.44 0.19 -6.99 16 16 C -0.05 -1.83 9.40 23.84 0.22 -1.60 16 17 C -0.04 -1.24 5.86 -20.16 -0.12 -1.35 16 18 C -0.10 -2.65 9.17 22.58 0.21 -2.45 16 19 C -0.04 -0.99 6.32 22.38 0.14 -0.84 16 20 Cl -0.05 -1.05 28.44 -2.72 -0.08 -1.13 16 21 C 0.06 1.44 6.51 22.74 0.15 1.59 16 22 C 0.06 1.50 6.48 22.52 0.15 1.65 16 23 C -0.10 -2.61 9.70 22.68 0.22 -2.39 16 24 O -0.31 -6.49 10.41 -83.14 -0.87 -7.35 16 25 C 0.01 0.14 7.26 72.14 0.52 0.66 16 26 C 0.01 0.14 7.26 72.14 0.52 0.66 16 27 O -0.31 -6.23 9.81 -81.62 -0.80 -7.04 16 28 H 0.25 5.00 7.80 -4.42 -0.03 4.96 16 29 H 0.10 3.67 8.04 -2.39 -0.02 3.65 16 30 H 0.10 3.51 6.24 -2.39 -0.01 3.50 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.14 4.74 4.17 -2.91 -0.01 4.72 16 33 H 0.12 4.78 7.48 -2.91 -0.02 4.75 16 34 H 0.15 3.87 6.18 -2.91 -0.02 3.85 16 35 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.16 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -78.15 358.56 6.21 -71.93 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.11 Total: 15.31 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 6.26 Total: -6.98 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -1.38 Total: -76.71 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -1.73 Total: -50.14 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -78.15 6.21 -71.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281019516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.079 kcal (2) G-P(sol) polarization free energy of solvation -78.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds