Wall clock time and date at job start Wed Apr 1 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47662 * 64.84553 * 3 2 1 5 5 C 1.36875 * 120.00190 * 221.10571 * 4 3 2 6 6 H 1.08001 * 120.00057 * 213.18913 * 5 4 3 7 7 C 1.39042 * 120.00016 * 33.18423 * 5 4 3 8 8 N 1.31364 * 119.99775 * 29.60104 * 7 5 4 9 9 Si 1.86800 * 120.00062 * 209.59971 * 7 5 4 10 10 H 1.48504 * 109.46605 * 60.00241 * 9 7 5 11 11 H 1.48495 * 109.46896 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47369 * 300.00477 * 9 7 5 13 13 C 1.34781 * 119.99719 * 41.10110 * 4 3 2 14 14 O 1.21600 * 119.99882 * 179.06844 * 13 4 3 15 15 C 1.47670 * 120.00087 * 359.07489 * 13 4 3 16 16 C 1.39606 * 120.12910 * 23.77988 * 15 13 4 17 17 C 1.38517 * 119.78478 * 180.25153 * 16 15 13 18 18 N 1.40033 * 119.97692 * 179.73688 * 17 16 15 19 19 C 1.47054 * 125.40969 * 354.38044 * 18 17 16 20 20 C 1.54102 * 103.86035 * 180.02562 * 19 18 17 21 21 N 1.47053 * 103.86340 * 0.02562 * 20 19 18 22 22 C 1.33945 * 109.17935 * 359.97438 * 21 20 19 23 23 O 1.21589 * 123.04239 * 179.97438 * 22 21 20 24 24 C 1.39020 * 120.04835 * 359.45952 * 17 16 15 25 25 C 1.38186 * 120.25447 * 0.25103 * 24 17 16 26 26 C 1.38152 * 120.21734 * 0.02562 * 25 24 17 27 27 Cl 1.73605 * 120.02428 * 179.97438 * 26 25 24 28 28 H 4.40642 * 5.51439 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.46917 * 304.84113 * 3 2 1 30 30 H 1.09002 * 109.46686 * 184.84966 * 3 2 1 31 31 H 0.97006 * 119.99712 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.11209 * 0.02562 * 16 15 13 33 33 H 1.09002 * 110.55162 * 298.59998 * 19 18 17 34 34 H 1.08996 * 110.54706 * 61.40820 * 19 18 17 35 35 H 1.09003 * 110.54887 * 241.40682 * 20 19 18 36 36 H 1.09005 * 110.54964 * 118.59431 * 20 19 18 37 37 H 0.97003 * 125.40823 * 180.26738 * 21 20 19 38 38 H 1.07995 * 119.87718 * 180.27300 * 24 17 16 39 39 H 1.08010 * 119.89092 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.5862 -1.2502 5 6 4.2054 -1.4388 -1.2334 6 1 4.8929 -1.4587 -2.0660 7 6 4.4078 -2.2793 -0.1444 8 7 3.3814 -2.7063 0.5554 9 14 6.1393 -2.8011 0.3235 10 1 6.9493 -1.5982 0.6432 11 1 6.0843 -3.6902 1.5116 12 1 6.7609 -3.5289 -0.8119 13 6 2.5300 -0.2866 -2.4168 14 8 2.9461 -0.7603 -3.4566 15 6 1.3622 0.6171 -2.4325 16 6 1.1724 1.5349 -1.3977 17 6 0.0717 2.3755 -1.4169 18 7 -0.1255 3.2938 -0.3783 19 6 0.6896 3.3880 0.8421 20 6 0.0457 4.5469 1.6276 21 7 -1.0642 4.9823 0.7668 22 6 -1.0872 4.2254 -0.3381 23 8 -1.9072 4.3703 -1.2241 24 6 -0.8343 2.3123 -2.4694 25 6 -0.6450 1.4087 -3.4976 26 6 0.4460 0.5612 -3.4865 27 17 0.6785 -0.5725 -4.7805 28 1 -1.0499 0.0001 -0.0003 29 1 3.0096 -0.5863 0.8435 30 1 3.0088 1.0248 0.0869 31 1 3.5226 -3.2930 1.3149 32 1 1.8796 1.5868 -0.5830 33 1 0.6325 2.4611 1.4128 34 1 1.7247 3.6222 0.5936 35 1 0.7610 5.3570 1.7693 36 1 -0.3309 4.1953 2.5882 37 1 -1.6791 5.7057 0.9654 38 1 -1.6891 2.9721 -2.4838 39 1 -1.3524 1.3648 -4.3127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281599902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:33 Heat of formation + Delta-G solvation = 115.160541 kcal Electronic energy + Delta-G solvation = -28783.934088 eV Core-core repulsion = 24723.290925 eV Total energy + Delta-G solvation = -4060.643163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65403 -40.01882 -37.62840 -36.68812 -36.08991 -35.26011 -34.06630 -33.46630 -31.42672 -30.12485 -29.60911 -28.58575 -26.94632 -25.29856 -23.83183 -23.31138 -22.03857 -21.06975 -19.33906 -18.06790 -17.90928 -17.21012 -16.92502 -16.80686 -16.42464 -15.58379 -15.31710 -14.78139 -14.61107 -14.48369 -14.26525 -14.09987 -13.97439 -13.64414 -13.36307 -12.91720 -12.88126 -12.63744 -12.32313 -12.10345 -12.05052 -11.73702 -11.32964 -11.15278 -10.85318 -10.60420 -10.50987 -10.28955 -10.09689 -9.97960 -9.78133 -9.70436 -9.38385 -9.16627 -8.35331 -8.00389 -7.74376 -7.32272 -6.53654 -4.03359 1.35019 1.50999 2.27421 2.85051 2.93364 3.09842 3.17116 3.19240 3.25160 3.38571 3.57887 3.74370 4.03990 4.05516 4.36174 4.61713 4.62775 4.77923 4.83667 4.91579 5.03018 5.15162 5.21349 5.39031 5.44827 5.60084 5.67684 5.78375 6.00910 6.16799 6.26205 6.37301 6.48195 6.58278 6.61389 6.65370 6.84952 7.18910 7.31986 7.44634 8.05249 8.08737 8.32918 8.34456 9.03525 9.18432 9.85948 10.49795 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011451 B = 0.004700 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.716848 B = 5955.624760 C = 7911.418122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.148 4.148 3 C 0.204 3.796 4 N -0.429 5.429 5 C -0.317 4.317 6 H 0.103 0.897 7 C 0.040 3.960 8 N -0.847 5.847 9 Si 0.914 3.086 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.493 3.507 14 O -0.548 6.548 15 C -0.092 4.092 16 C -0.100 4.100 17 C 0.156 3.844 18 N -0.560 5.560 19 C 0.080 3.920 20 C 0.094 3.906 21 N -0.739 5.739 22 C 0.700 3.300 23 O -0.572 6.572 24 C -0.129 4.129 25 C -0.114 4.114 26 C -0.007 4.007 27 Cl -0.050 7.050 28 H 0.207 0.793 29 H 0.123 0.877 30 H 0.066 0.934 31 H 0.272 0.728 32 H 0.160 0.840 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.431 0.569 38 H 0.160 0.840 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 13.621 6.953 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.149 4.149 3 C 0.081 3.919 4 N -0.148 5.148 5 C -0.444 4.444 6 H 0.121 0.879 7 C -0.167 4.167 8 N -0.483 5.483 9 Si 0.740 3.260 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.283 3.717 14 O -0.429 6.429 15 C -0.097 4.097 16 C -0.121 4.121 17 C 0.063 3.937 18 N -0.287 5.287 19 C -0.044 4.044 20 C -0.031 4.031 21 N -0.401 5.401 22 C 0.401 3.599 23 O -0.450 6.450 24 C -0.150 4.150 25 C -0.133 4.133 26 C -0.036 4.036 27 Cl -0.021 7.021 28 H 0.224 0.776 29 H 0.140 0.860 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.176 0.824 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.273 0.727 38 H 0.177 0.823 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.660 13.127 5.984 15.890 hybrid contribution 0.252 -0.222 0.680 0.759 sum -6.408 12.906 6.665 15.876 Atomic orbital electron populations 1.24654 0.95643 1.01782 1.01317 1.22732 0.94838 0.98243 0.99103 1.18873 0.82790 0.97392 0.92886 1.43443 1.27775 1.40602 1.02987 1.19473 1.01166 1.17200 1.06578 0.87944 1.25397 0.98803 0.94575 0.97941 1.70129 1.30000 1.29057 1.19088 0.86187 0.82883 0.78631 0.78308 1.19615 1.20955 1.19480 1.17989 0.83516 0.84713 0.85513 1.90688 1.65078 1.55817 1.31324 1.19821 0.97846 0.97872 0.94176 1.21651 0.97574 0.94219 0.98674 1.17037 0.96249 0.91902 0.88523 1.44316 1.31519 1.33112 1.19716 1.22639 0.96601 0.99925 0.85189 1.22390 0.89257 0.96685 0.94760 1.45066 1.35473 1.38537 1.21071 1.15801 0.81562 0.79694 0.82837 1.90848 1.41392 1.72936 1.39777 1.21479 1.00486 1.00183 0.92835 1.20719 0.97074 0.95925 0.99622 1.20843 0.96432 0.95059 0.91315 1.98367 1.96775 1.59501 1.47432 0.77631 0.85968 0.91652 0.91836 0.82376 0.88658 0.89064 0.89544 0.89480 0.72709 0.82294 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.65 15.65 29.55 0.46 -3.19 16 2 C -0.15 -2.74 8.61 -38.09 -0.33 -3.06 16 3 C 0.20 4.01 5.31 -6.83 -0.04 3.98 16 4 N -0.43 -10.39 2.84 -119.07 -0.34 -10.73 16 5 C -0.32 -8.30 8.93 -15.00 -0.13 -8.43 16 6 H 0.10 2.82 7.74 -52.49 -0.41 2.41 16 7 C 0.04 0.98 4.64 -17.45 -0.08 0.90 16 8 N -0.85 -21.48 11.90 55.50 0.66 -20.82 16 9 Si 0.91 19.00 29.64 -169.99 -5.04 13.96 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.49 12.22 7.14 -12.41 -0.09 12.13 16 14 O -0.55 -15.20 14.28 5.28 0.08 -15.12 16 15 C -0.09 -1.91 4.50 -104.96 -0.47 -2.39 16 16 C -0.10 -1.72 4.80 -39.94 -0.19 -1.92 16 17 C 0.16 2.44 5.20 -83.72 -0.44 2.01 16 18 N -0.56 -7.20 3.16 -118.28 -0.37 -7.57 16 19 C 0.08 0.69 6.48 -3.16 -0.02 0.67 16 20 C 0.09 0.54 8.06 -3.16 -0.03 0.52 16 21 N -0.74 -6.25 6.37 -64.70 -0.41 -6.67 16 22 C 0.70 9.20 8.52 -88.40 -0.75 8.45 16 23 O -0.57 -9.47 14.74 5.29 0.08 -9.39 16 24 C -0.13 -2.10 9.29 -39.31 -0.37 -2.47 16 25 C -0.11 -1.91 9.81 -39.63 -0.39 -2.30 16 26 C -0.01 -0.15 6.34 -39.04 -0.25 -0.40 16 27 Cl -0.05 -1.02 26.31 -51.86 -1.36 -2.39 16 28 H 0.21 3.04 7.80 -54.10 -0.42 2.62 16 29 H 0.12 2.58 5.71 -51.93 -0.30 2.28 16 30 H 0.07 1.06 6.42 -51.93 -0.33 0.73 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.16 2.53 2.60 -52.48 -0.14 2.39 16 33 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.09 0.70 8.12 -51.93 -0.42 0.27 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.43 2.72 8.96 -40.82 -0.37 2.35 16 38 H 0.16 2.64 5.25 -52.49 -0.28 2.36 16 39 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -33.49 337.18 -8.22 -41.71 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.48 Total: 7.43 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -3.11 Total: 4.50 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.46 Total: -45.78 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: 0.15 Total: -24.51 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.04 Total: 13.96 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.36 Total: -2.39 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.49 -8.22 -41.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281599902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.866 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds