Wall clock time and date at job start Wed Apr 1 2020 05:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47662 * 64.84553 * 3 2 1 5 5 C 1.36875 * 120.00190 * 221.10571 * 4 3 2 6 6 H 1.08001 * 120.00057 * 213.18913 * 5 4 3 7 7 C 1.39042 * 120.00016 * 33.18423 * 5 4 3 8 8 N 1.31364 * 119.99775 * 29.60104 * 7 5 4 9 9 Si 1.86800 * 120.00062 * 209.59971 * 7 5 4 10 10 H 1.48504 * 109.46605 * 60.00241 * 9 7 5 11 11 H 1.48495 * 109.46896 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47369 * 300.00477 * 9 7 5 13 13 C 1.34781 * 119.99719 * 41.10110 * 4 3 2 14 14 O 1.21600 * 119.99882 * 179.06844 * 13 4 3 15 15 C 1.47670 * 120.00087 * 359.07489 * 13 4 3 16 16 C 1.39606 * 120.12910 * 23.77988 * 15 13 4 17 17 C 1.38517 * 119.78478 * 180.25153 * 16 15 13 18 18 N 1.40033 * 119.97692 * 179.73688 * 17 16 15 19 19 C 1.47054 * 125.40969 * 354.38044 * 18 17 16 20 20 C 1.54102 * 103.86035 * 180.02562 * 19 18 17 21 21 N 1.47053 * 103.86340 * 0.02562 * 20 19 18 22 22 C 1.33945 * 109.17935 * 359.97438 * 21 20 19 23 23 O 1.21589 * 123.04239 * 179.97438 * 22 21 20 24 24 C 1.39020 * 120.04835 * 359.45952 * 17 16 15 25 25 C 1.38186 * 120.25447 * 0.25103 * 24 17 16 26 26 C 1.38152 * 120.21734 * 0.02562 * 25 24 17 27 27 Cl 1.73605 * 120.02428 * 179.97438 * 26 25 24 28 28 H 4.40642 * 5.51439 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.46917 * 304.84113 * 3 2 1 30 30 H 1.09002 * 109.46686 * 184.84966 * 3 2 1 31 31 H 0.97006 * 119.99712 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.11209 * 0.02562 * 16 15 13 33 33 H 1.09002 * 110.55162 * 298.59998 * 19 18 17 34 34 H 1.08996 * 110.54706 * 61.40820 * 19 18 17 35 35 H 1.09003 * 110.54887 * 241.40682 * 20 19 18 36 36 H 1.09005 * 110.54964 * 118.59431 * 20 19 18 37 37 H 0.97003 * 125.40823 * 180.26738 * 21 20 19 38 38 H 1.07995 * 119.87718 * 180.27300 * 24 17 16 39 39 H 1.08010 * 119.89092 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.5862 -1.2502 5 6 4.2054 -1.4388 -1.2334 6 1 4.8929 -1.4587 -2.0660 7 6 4.4078 -2.2793 -0.1444 8 7 3.3814 -2.7063 0.5554 9 14 6.1393 -2.8011 0.3235 10 1 6.9493 -1.5982 0.6432 11 1 6.0843 -3.6902 1.5116 12 1 6.7609 -3.5289 -0.8119 13 6 2.5300 -0.2866 -2.4168 14 8 2.9461 -0.7603 -3.4566 15 6 1.3622 0.6171 -2.4325 16 6 1.1724 1.5349 -1.3977 17 6 0.0717 2.3755 -1.4169 18 7 -0.1255 3.2938 -0.3783 19 6 0.6896 3.3880 0.8421 20 6 0.0457 4.5469 1.6276 21 7 -1.0642 4.9823 0.7668 22 6 -1.0872 4.2254 -0.3381 23 8 -1.9072 4.3703 -1.2241 24 6 -0.8343 2.3123 -2.4694 25 6 -0.6450 1.4087 -3.4976 26 6 0.4460 0.5612 -3.4865 27 17 0.6785 -0.5725 -4.7805 28 1 -1.0499 0.0001 -0.0003 29 1 3.0096 -0.5863 0.8435 30 1 3.0088 1.0248 0.0869 31 1 3.5226 -3.2930 1.3149 32 1 1.8796 1.5868 -0.5830 33 1 0.6325 2.4611 1.4128 34 1 1.7247 3.6222 0.5936 35 1 0.7610 5.3570 1.7693 36 1 -0.3309 4.1953 2.5882 37 1 -1.6791 5.7057 0.9654 38 1 -1.6891 2.9721 -2.4838 39 1 -1.3524 1.3648 -4.3127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281599902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:32 Heat of formation + Delta-G solvation = 92.632636 kcal Electronic energy + Delta-G solvation = -28784.910972 eV Core-core repulsion = 24723.290925 eV Total energy + Delta-G solvation = -4061.620046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68158 -41.45595 -39.18318 -37.82480 -37.50529 -36.92911 -35.23923 -34.98965 -33.21818 -31.55763 -30.62781 -29.55355 -28.57112 -27.03736 -24.93258 -24.55443 -23.13625 -22.41377 -20.67960 -19.66629 -18.99761 -18.71715 -18.15296 -17.87550 -17.67584 -17.15296 -16.60545 -16.39148 -16.11548 -15.76863 -15.52455 -15.29807 -15.00168 -14.84342 -14.68796 -14.56872 -14.14696 -13.70855 -13.59487 -13.55666 -13.43460 -13.10156 -12.86040 -12.68334 -12.53984 -12.15165 -12.09173 -11.84157 -11.48777 -11.25278 -11.14565 -11.01946 -10.94239 -10.20297 -10.14427 -9.60094 -9.42955 -8.57678 -8.41696 -6.00858 -0.10293 0.16451 1.27297 1.42647 1.44457 1.48389 1.57836 1.74113 1.84087 1.99435 2.21555 2.33957 2.77219 2.88809 3.00854 3.10566 3.46652 3.46957 3.58414 3.81593 4.05644 4.12674 4.20161 4.30682 4.43693 4.55592 4.64390 4.73123 4.81896 4.89429 4.91319 4.92744 5.12426 5.25184 5.30769 5.37614 5.49121 5.92757 6.15092 6.15292 6.38210 6.46121 6.67987 7.13836 7.32692 7.42112 8.00879 8.61086 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011451 B = 0.004700 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.716848 B = 5955.624760 C = 7911.418122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.173 4.173 3 C 0.205 3.795 4 N -0.439 5.439 5 C -0.354 4.354 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.870 5.870 9 Si 0.980 3.020 10 H -0.256 1.256 11 H -0.273 1.273 12 H -0.281 1.281 13 C 0.479 3.521 14 O -0.595 6.595 15 C -0.115 4.115 16 C -0.088 4.088 17 C 0.173 3.827 18 N -0.564 5.564 19 C 0.065 3.935 20 C 0.100 3.900 21 N -0.722 5.722 22 C 0.691 3.309 23 O -0.612 6.612 24 C -0.127 4.127 25 C -0.103 4.103 26 C -0.028 4.028 27 Cl -0.069 7.069 28 H 0.229 0.771 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.278 0.722 32 H 0.171 0.829 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.442 0.558 38 H 0.163 0.837 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.184 15.671 9.839 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C 0.083 3.917 4 N -0.157 5.157 5 C -0.481 4.481 6 H 0.091 0.909 7 C -0.191 4.191 8 N -0.505 5.505 9 Si 0.803 3.197 10 H -0.180 1.180 11 H -0.198 1.198 12 H -0.207 1.207 13 C 0.270 3.730 14 O -0.481 6.481 15 C -0.120 4.120 16 C -0.109 4.109 17 C 0.078 3.922 18 N -0.290 5.290 19 C -0.056 4.056 20 C -0.024 4.024 21 N -0.384 5.384 22 C 0.392 3.608 23 O -0.493 6.493 24 C -0.148 4.148 25 C -0.122 4.122 26 C -0.057 4.057 27 Cl -0.040 7.040 28 H 0.245 0.755 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.187 0.813 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.286 0.714 38 H 0.180 0.820 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.328 15.236 8.974 19.141 hybrid contribution 0.354 -0.766 -0.144 0.857 sum -6.974 14.470 8.829 18.329 Atomic orbital electron populations 1.25137 0.96036 1.00301 0.99639 1.22560 0.94757 0.99589 1.00515 1.18986 0.83802 0.98677 0.90226 1.43650 1.27403 1.40290 1.04383 1.19384 1.02223 1.19505 1.06943 0.90862 1.26091 1.02234 0.93792 0.96947 1.70173 1.31684 1.29268 1.19347 0.85220 0.78215 0.78673 0.77604 1.17983 1.19808 1.20694 1.18645 0.84209 0.85032 0.85123 1.90630 1.66656 1.57876 1.32898 1.19592 0.97088 0.99011 0.96261 1.21558 0.98154 0.93426 0.97788 1.16977 0.94951 0.91381 0.88929 1.44380 1.32176 1.32323 1.20084 1.23051 0.97141 1.01614 0.83836 1.22668 0.88728 0.96458 0.94522 1.45039 1.35974 1.37637 1.19788 1.16068 0.81140 0.80106 0.83521 1.90814 1.42871 1.74031 1.41557 1.21618 1.00619 0.99738 0.92800 1.20909 0.96249 0.94776 1.00284 1.21028 0.97661 0.95975 0.91075 1.98350 1.96951 1.60413 1.48282 0.75452 0.87423 0.88059 0.91253 0.81258 0.88245 0.87803 0.86576 0.86765 0.71353 0.81954 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.16 15.65 74.32 1.16 -5.00 16 2 C -0.17 -6.19 8.61 30.50 0.26 -5.93 16 3 C 0.20 8.00 5.31 84.57 0.45 8.44 16 4 N -0.44 -21.85 2.84 -648.89 -1.84 -23.70 16 5 C -0.35 -19.19 8.93 84.10 0.75 -18.44 16 6 H 0.07 4.30 7.74 -2.91 -0.02 4.28 16 7 C 0.01 0.74 4.64 84.96 0.39 1.14 16 8 N -0.87 -44.23 11.90 21.68 0.26 -43.97 16 9 Si 0.98 39.11 29.64 68.60 2.03 41.15 16 10 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 11 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 12 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.48 24.64 7.14 86.73 0.62 25.26 16 14 O -0.60 -34.95 14.28 -4.03 -0.06 -35.00 16 15 C -0.11 -4.81 4.50 -20.09 -0.09 -4.90 16 16 C -0.09 -2.93 4.80 22.04 0.11 -2.82 16 17 C 0.17 5.06 5.20 38.08 0.20 5.26 16 18 N -0.56 -12.83 3.16 -646.84 -2.04 -14.87 16 19 C 0.07 0.88 6.48 86.65 0.56 1.44 16 20 C 0.10 0.66 8.06 86.65 0.70 1.36 16 21 N -0.72 -9.43 6.37 -477.34 -3.04 -12.47 16 22 C 0.69 16.20 8.52 179.57 1.53 17.73 16 23 O -0.61 -19.11 14.74 -3.99 -0.06 -19.17 16 24 C -0.13 -3.93 9.29 22.44 0.21 -3.72 16 25 C -0.10 -3.36 9.81 22.24 0.22 -3.14 16 26 C -0.03 -1.13 6.34 22.62 0.14 -0.99 16 27 Cl -0.07 -2.93 26.31 -2.72 -0.07 -3.00 16 28 H 0.23 6.07 7.80 -4.42 -0.03 6.03 16 29 H 0.11 4.52 5.71 -2.39 -0.01 4.51 16 30 H 0.10 3.12 6.42 -2.39 -0.02 3.11 16 31 H 0.28 13.10 8.31 -92.70 -0.77 12.33 16 32 H 0.17 5.12 2.60 -2.91 -0.01 5.11 16 33 H 0.10 1.30 8.09 -2.39 -0.02 1.29 16 34 H 0.10 1.17 8.12 -2.39 -0.02 1.15 16 35 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 37 H 0.44 3.93 8.96 -92.71 -0.83 3.10 16 38 H 0.16 5.11 5.25 -2.91 -0.02 5.09 16 39 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -76.88 337.18 2.70 -74.18 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.31 Total: 21.16 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 7.21 Total: 15.69 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -6.67 Total: -95.01 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -0.12 Total: -54.17 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.07 Total: -3.00 kcal Total: -76.88 2.70 -74.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281599902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.816 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds