Wall clock time and date at job start Wed Apr 1 2020 04:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46800 * 148.78542 * 3 2 1 5 5 N 1.46506 * 109.47296 * 179.97438 * 4 3 2 6 6 C 1.46495 * 119.99851 * 270.00184 * 5 4 3 7 7 C 1.50706 * 109.47090 * 269.99593 * 6 5 4 8 8 H 1.08003 * 119.99866 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00286 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00133 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99919 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47133 * 60.00340 * 11 9 7 13 13 H 1.48497 * 109.47213 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47652 * 300.00225 * 11 9 7 15 15 C 1.34774 * 119.99883 * 89.99252 * 5 4 3 16 16 O 1.21285 * 119.99853 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00392 * 0.02562 * 15 5 4 18 18 O 1.42899 * 109.47234 * 179.97438 * 17 15 5 19 19 C 1.35910 * 116.99593 * 180.02562 * 18 17 15 20 20 C 1.38835 * 119.97897 * 0.02562 * 19 18 17 21 21 C 1.38354 * 120.23867 * 180.02562 * 20 19 18 22 22 Cl 1.73603 * 119.90488 * 179.97438 * 21 20 19 23 23 C 1.38114 * 120.18912 * 359.97438 * 21 20 19 24 24 C 1.39610 * 119.94489 * 359.96240 * 23 21 20 25 25 C 1.43197 * 120.12203 * 180.02562 * 24 23 21 26 26 N 9.94100 * 109.50138 * 80.58183 * 4 1 2 27 27 C 1.38455 * 119.96964 * 180.02562 * 19 18 17 28 28 H 1.08999 * 109.47643 * 28.78041 * 3 2 1 29 29 H 1.09011 * 109.46772 * 268.77733 * 3 2 1 30 30 H 1.09001 * 109.47543 * 59.99900 * 4 3 2 31 31 H 1.08999 * 109.47062 * 299.99474 * 4 3 2 32 32 H 1.08997 * 109.47533 * 29.99076 * 6 5 4 33 33 H 1.09001 * 109.47328 * 149.99647 * 6 5 4 34 34 H 0.97000 * 120.00345 * 179.97438 * 10 9 7 35 35 H 1.09008 * 109.46618 * 59.99556 * 17 15 5 36 36 H 1.08995 * 109.46929 * 299.99835 * 17 15 5 37 37 H 1.07998 * 119.87818 * 359.97438 * 20 19 18 38 38 H 1.07995 * 120.03171 * 179.97438 * 23 21 20 39 39 H 1.07999 * 120.09046 * 359.74948 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2345 -0.7476 5 7 4.5824 1.2356 -0.7471 6 6 5.3141 1.8938 0.3381 7 6 5.5644 3.3346 -0.0263 8 1 5.2139 3.7211 -0.9720 9 6 6.2417 4.1589 0.8470 10 7 6.6689 3.6882 1.9982 11 14 6.5525 5.9445 0.3949 12 1 5.2547 6.6347 0.1835 13 1 7.2940 6.6118 1.4949 14 1 7.3552 6.0068 -0.8529 15 6 5.2571 0.6310 -1.7449 16 8 6.4699 0.6315 -1.7443 17 6 4.5045 -0.0458 -2.8615 18 8 5.4338 -0.6078 -3.7901 19 6 4.9151 -1.2584 -4.8648 20 6 3.5388 -1.3525 -5.0209 21 6 3.0049 -2.0140 -6.1125 22 17 1.2826 -2.1270 -6.2987 23 6 3.8383 -2.5847 -7.0544 24 6 5.2235 -2.4936 -6.9059 25 6 6.0911 -3.0835 -7.8805 26 7 6.7731 -3.5515 -8.6566 27 6 5.7598 -1.8269 -5.8030 28 1 2.9719 -0.8999 -0.4948 29 1 2.9713 0.0228 1.0276 30 1 2.7536 2.1351 -0.2528 31 1 2.7541 1.2125 -1.7750 32 1 4.7247 1.8479 1.2538 33 1 6.2668 1.3875 0.4934 34 1 7.1458 4.2680 2.6124 35 1 3.8777 0.6853 -3.3724 36 1 3.8780 -0.8371 -2.4499 37 1 2.8825 -0.9084 -4.2871 38 1 3.4189 -3.1008 -7.9053 39 1 6.8305 -1.7506 -5.6844 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287585968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:11 Heat of formation + Delta-G solvation = 9.949405 kcal Electronic energy + Delta-G solvation = -26211.829179 eV Core-core repulsion = 22146.623719 eV Total energy + Delta-G solvation = -4065.205460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85009 -39.47894 -38.14035 -37.21572 -36.96855 -36.29937 -35.39797 -33.01633 -31.73509 -31.03733 -30.97376 -29.07429 -26.84597 -24.60067 -24.16912 -23.16558 -22.72890 -19.90755 -18.98875 -17.87526 -17.42459 -16.95735 -16.74207 -16.60288 -16.36335 -15.93623 -15.59829 -15.22113 -14.83830 -14.69942 -14.39828 -14.18379 -13.82726 -13.70528 -13.51259 -13.32937 -13.20512 -12.97806 -12.59564 -12.51328 -12.46508 -12.36529 -12.01648 -11.86002 -11.75957 -11.47617 -11.38771 -11.19976 -11.08522 -10.93164 -10.69972 -10.27904 -9.84134 -9.43695 -9.25435 -8.78344 -8.54900 -8.05643 -6.17126 -4.22533 0.13062 0.67546 1.52307 2.16550 2.41563 2.53729 2.63901 2.70504 2.99734 3.25621 3.29574 3.31102 3.33183 3.36995 3.62637 4.04590 4.32751 4.34481 4.44666 4.48461 4.55722 4.68316 4.73034 4.82791 4.95620 5.00140 5.01801 5.18698 5.28974 5.48900 5.54160 5.63397 5.66173 5.81431 5.90386 6.67544 6.90924 7.03036 7.18133 7.27713 7.46576 7.77838 8.00228 8.06181 8.62247 8.82339 9.43512 10.91019 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.002791 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.698706 B =10030.881646 C =11993.404690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.214 3.786 3 C -0.052 4.052 4 C 0.113 3.887 5 N -0.591 5.591 6 C 0.247 3.753 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.510 3.490 16 O -0.505 6.505 17 C 0.032 3.968 18 O -0.274 6.274 19 C 0.153 3.847 20 C -0.178 4.178 21 C 0.005 3.995 22 Cl -0.053 7.053 23 C -0.106 4.106 24 C 0.026 3.974 25 C 0.258 3.742 26 N -0.402 5.402 27 C -0.097 4.097 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.266 0.734 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.716 -12.055 -12.599 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.104 4.104 3 C -0.093 4.093 4 C -0.014 4.014 5 N -0.324 5.324 6 C 0.128 3.872 7 C -0.573 4.573 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.294 3.706 16 O -0.379 6.379 17 C -0.047 4.047 18 O -0.185 6.185 19 C 0.106 3.894 20 C -0.198 4.198 21 C -0.022 4.022 22 Cl -0.024 7.024 23 C -0.127 4.127 24 C 0.022 3.978 25 C -0.058 4.058 26 N -0.077 5.077 27 C -0.118 4.118 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.510 -12.686 -13.562 20.864 hybrid contribution -0.170 1.273 0.224 1.304 sum -9.680 -11.413 -13.338 20.047 Atomic orbital electron populations 1.81235 1.12987 1.08567 1.08942 1.29045 0.95041 0.93213 0.93115 1.19904 0.81520 1.01871 1.06044 1.21399 0.81978 0.97517 1.00482 1.48162 1.04951 1.54030 1.25300 1.19427 0.92709 0.92160 0.82861 1.21351 1.37289 0.94767 1.03844 0.92310 1.24905 0.95138 0.98952 0.94841 1.69897 1.37933 1.36431 1.08805 0.86563 0.78447 0.84266 0.78210 1.20207 1.21163 1.20091 1.19625 0.88156 0.80079 0.82717 1.90767 1.13262 1.58255 1.75648 1.22917 0.92266 0.98717 0.90777 1.86273 1.34137 1.66824 1.31293 1.18606 0.90575 0.92196 0.88009 1.21399 0.94523 1.03966 0.99929 1.20351 0.85614 1.00204 0.96075 1.98413 1.09783 1.96902 1.97262 1.20873 0.90759 1.01256 0.99860 1.15369 0.90117 1.00097 0.92192 1.25262 0.93457 0.93850 0.93244 1.81218 1.08492 1.08496 1.09493 1.20502 1.01301 0.98164 0.91858 0.87625 0.86153 0.88129 0.90756 0.94278 0.93314 0.92482 0.88802 0.89054 0.83415 0.83741 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.76 18.54 42.16 0.78 -4.97 16 2 C 0.21 2.18 15.43 -20.76 -0.32 1.86 16 3 C -0.05 -0.43 6.03 -29.52 -0.18 -0.60 16 4 C 0.11 1.22 5.17 -4.04 -0.02 1.19 16 5 N -0.59 -9.48 2.46 -175.06 -0.43 -9.91 16 6 C 0.25 5.38 5.16 -5.19 -0.03 5.35 16 7 C -0.53 -13.44 9.39 -34.44 -0.32 -13.76 16 8 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.47 13.29 55.43 0.74 -23.74 16 11 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.51 8.36 7.75 -10.99 -0.09 8.27 16 16 O -0.51 -11.08 16.08 -14.36 -0.23 -11.31 16 17 C 0.03 0.34 3.77 36.00 0.14 0.47 16 18 O -0.27 -3.33 9.67 -39.37 -0.38 -3.71 16 19 C 0.15 1.41 6.68 -39.28 -0.26 1.15 16 20 C -0.18 -1.33 8.81 -39.32 -0.35 -1.68 16 21 C 0.00 0.03 6.31 -39.58 -0.25 -0.22 16 22 Cl -0.05 -0.38 28.95 -51.86 -1.50 -1.88 16 23 C -0.11 -0.71 9.53 -39.12 -0.37 -1.08 16 24 C 0.03 0.20 5.73 -106.96 -0.61 -0.41 16 25 C 0.26 2.37 15.32 -22.53 -0.35 2.02 16 26 N -0.40 -4.62 18.53 41.77 0.77 -3.85 16 27 C -0.10 -0.82 9.69 -39.00 -0.38 -1.20 16 28 H 0.11 0.62 7.22 -51.93 -0.38 0.25 16 29 H 0.12 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.07 0.59 6.44 -51.93 -0.33 0.26 16 32 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.09 0.78 6.92 -51.92 -0.36 0.42 16 36 H 0.09 0.64 6.70 -51.93 -0.35 0.29 16 37 H 0.15 0.87 6.28 -52.49 -0.33 0.54 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -33.02 376.08 -6.87 -39.89 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -3.78 Total: -4.57 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -3.48 Total: 2.96 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.86 Total: -42.46 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.61 Total: -15.02 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.02 -6.87 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287585968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.837 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds