Wall clock time and date at job start Wed Apr 1 2020 04:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46842 * 2 1 4 4 S 1.81405 * 109.46987 * 179.97438 * 3 2 1 5 5 O 1.42097 * 110.54099 * 68.37794 * 4 3 2 6 6 O 1.42097 * 110.54071 * 291.62584 * 4 3 2 7 7 C 1.76199 * 104.44760 * 180.02562 * 4 3 2 8 8 C 1.38240 * 120.00251 * 90.00433 * 7 4 3 9 9 C 1.38235 * 120.00124 * 180.02562 * 8 7 4 10 10 C 1.38232 * 119.99910 * 359.97438 * 9 8 7 11 11 S 1.76207 * 119.99999 * 179.97438 * 10 9 8 12 12 O 1.42098 * 106.39880 * 336.45792 * 11 10 9 13 13 O 1.42105 * 106.40057 * 203.54273 * 11 10 9 14 14 N 1.65598 * 107.21755 * 89.99879 * 11 10 9 15 15 C 1.46503 * 119.99877 * 90.00256 * 14 11 10 16 16 C 1.36931 * 120.00246 * 270.00324 * 14 11 10 17 17 H 1.07998 * 120.00191 * 23.09372 * 16 14 11 18 18 C 1.38808 * 120.00150 * 203.10109 * 16 14 11 19 19 N 1.31623 * 120.00217 * 11.87751 * 18 16 14 20 20 Si 1.86800 * 120.00106 * 191.88281 * 18 16 14 21 21 H 1.48493 * 109.47126 * 59.99715 * 20 18 16 22 22 H 1.48497 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47243 * 299.99739 * 20 18 16 24 24 C 1.38236 * 120.00093 * 0.25487 * 10 9 8 25 25 C 1.38232 * 119.99972 * 359.49543 * 24 10 9 26 26 H 1.08999 * 109.47288 * 299.99814 * 1 2 3 27 27 H 1.08995 * 109.46946 * 60.00036 * 1 2 3 28 28 H 1.08995 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47288 * 240.00186 * 2 1 3 30 30 H 1.08995 * 109.46946 * 119.99964 * 2 1 3 31 31 H 1.09004 * 109.47477 * 59.99871 * 3 2 1 32 32 H 1.09000 * 109.47761 * 299.99872 * 3 2 1 33 33 H 1.07990 * 119.99543 * 359.97438 * 8 7 4 34 34 H 1.07997 * 119.99743 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.47187 * 95.05648 * 15 14 11 36 36 H 1.09001 * 109.47196 * 215.05760 * 15 14 11 37 37 H 1.09001 * 109.46796 * 335.05447 * 15 14 11 38 38 H 0.97000 * 120.00147 * 179.97438 * 19 18 16 39 39 H 1.08005 * 119.99999 * 179.72357 * 24 10 9 40 40 H 1.08001 * 120.00048 * 180.23078 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3532 0.9520 -1.2359 6 8 4.3521 0.9523 1.2380 7 6 4.2936 3.1488 0.0015 8 6 4.4656 3.8178 1.1989 9 6 4.8100 5.1566 1.1994 10 6 4.9828 5.8262 0.0025 11 16 5.4211 7.5329 0.0032 12 8 4.9925 8.0567 1.2526 13 8 4.9944 8.0572 -1.2468 14 7 7.0750 7.6143 0.0045 15 6 7.8076 7.6505 -1.2637 16 6 7.7580 7.6477 1.1909 17 1 7.3009 7.2577 2.0883 18 6 9.0378 8.1828 1.2402 19 7 9.5058 8.8651 0.2165 20 14 10.0961 7.9346 2.7593 21 1 10.3057 6.4819 2.9846 22 1 11.4094 8.5990 2.5617 23 1 9.4147 8.5252 3.9392 24 6 4.8062 5.1585 -1.1949 25 6 4.4669 3.8184 -1.1954 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 4.3302 3.2947 2.1339 34 1 4.9439 5.6793 2.1349 35 1 8.0174 8.6858 -1.5327 36 1 8.7457 7.1056 -1.1572 37 1 7.2050 7.1871 -2.0448 38 1 10.4000 9.2394 0.2511 39 1 4.9368 5.6828 -2.1300 40 1 4.3325 3.2958 -2.1309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288673030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:57 Heat of formation + Delta-G solvation = -105.579764 kcal Electronic energy + Delta-G solvation = -26324.967835 eV Core-core repulsion = 22359.947561 eV Total energy + Delta-G solvation = -3965.020275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.14521 -37.34156 -36.46228 -36.19082 -35.55580 -35.34687 -35.03303 -31.61428 -31.21197 -31.14023 -28.17030 -26.34822 -23.96864 -23.45772 -22.97309 -22.27085 -19.26875 -18.86616 -18.23673 -17.54651 -16.80592 -16.58866 -16.52590 -16.43303 -15.66668 -14.98763 -14.81103 -14.49453 -14.31381 -14.06297 -13.62703 -13.58384 -13.33041 -13.22867 -13.00991 -12.99911 -12.64404 -12.30981 -12.21114 -11.96989 -11.94095 -11.51012 -11.42539 -11.37643 -11.32692 -11.24361 -11.23599 -10.93502 -10.88758 -10.68992 -10.43998 -10.33947 -10.09210 -9.73210 -9.13721 -9.10274 -8.00685 -6.18564 -3.92216 -0.27525 0.39243 1.21213 1.22542 2.57674 3.11277 3.23938 3.28029 3.30368 3.62177 3.81167 3.99836 4.06998 4.28803 4.35566 4.52428 4.58136 4.60271 4.79037 4.82168 5.06379 5.09831 5.11678 5.13586 5.24894 5.44996 5.46782 5.51918 5.55868 5.68069 5.80501 5.86879 5.90178 6.14450 6.18480 6.72673 6.82827 7.10713 7.45212 7.60683 8.39446 8.95502 9.32885 10.85079 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.003092 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.346126 B = 9052.628134 C = 9666.257703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.607 4.607 4 S 2.494 3.506 5 O -0.934 6.934 6 O -0.933 6.933 7 C -0.626 4.626 8 C -0.049 4.049 9 C -0.037 4.037 10 C -0.616 4.616 11 S 2.667 3.333 12 O -0.956 6.956 13 O -0.975 6.975 14 N -0.843 5.843 15 C 0.131 3.869 16 C -0.326 4.326 17 H 0.097 0.903 18 C 0.043 3.957 19 N -0.884 5.884 20 Si 0.918 3.082 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.046 4.046 25 C -0.051 4.051 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.148 0.852 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.395 -14.863 -1.914 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.736 4.736 4 S 2.674 3.326 5 O -0.931 6.931 6 O -0.930 6.930 7 C -0.712 4.712 8 C -0.069 4.069 9 C -0.057 4.057 10 C -0.697 4.697 11 S 2.752 3.248 12 O -0.946 6.946 13 O -0.965 6.965 14 N -0.678 5.678 15 C -0.015 4.015 16 C -0.456 4.456 17 H 0.115 0.885 18 C -0.162 4.162 19 N -0.523 5.523 20 Si 0.744 3.256 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.066 4.066 25 C -0.070 4.070 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.165 0.835 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.246 -14.797 -1.985 20.636 hybrid contribution 0.472 -0.012 0.699 0.843 sum -13.774 -14.809 -1.286 20.266 Atomic orbital electron populations 1.21723 0.93613 1.02461 1.02610 1.21327 0.98850 0.91695 1.03957 1.30359 1.24441 1.06344 1.12505 1.05567 0.77865 0.74242 0.74900 1.93578 1.77174 1.77921 1.44411 1.93583 1.77174 1.77923 1.44329 1.30715 1.15572 1.25101 0.99845 1.21058 0.94586 0.94592 0.96628 1.21126 0.92815 0.94094 0.97673 1.32442 1.08144 1.30282 0.98813 1.02635 0.73965 0.74885 0.73300 1.93504 1.81431 1.76227 1.43450 1.93506 1.81969 1.76678 1.44383 1.52718 1.20176 1.83451 1.11485 1.21205 0.95623 1.02612 0.82035 1.19064 0.99850 1.40787 0.85859 0.88488 1.25117 0.97820 0.95238 0.98006 1.70043 1.17999 1.33473 1.30815 0.86164 0.79175 0.78516 0.81723 1.20071 1.20954 1.19756 1.21097 0.93861 0.94222 0.97427 1.21019 0.94841 0.94546 0.96605 0.92082 0.92100 0.91794 0.90060 0.90048 0.84363 0.84378 0.83564 0.83186 0.91520 0.91828 0.95740 0.92409 0.83481 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 56. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.72 5.94 -26.73 -0.16 -0.88 16 3 C -0.61 -3.84 5.98 37.15 0.22 -3.62 16 4 S 2.49 26.39 5.16 -107.50 -0.55 25.83 16 5 O -0.93 -12.28 17.13 -57.54 -0.99 -13.27 16 6 O -0.93 -12.44 17.12 -57.54 -0.99 -13.43 16 7 C -0.63 -8.10 5.66 -39.58 -0.22 -8.33 16 8 C -0.05 -0.68 9.47 -39.58 -0.37 -1.05 16 9 C -0.04 -0.61 9.52 -39.58 -0.38 -0.98 16 10 C -0.62 -10.99 5.97 -39.58 -0.24 -11.23 16 11 S 2.67 57.08 5.60 -107.50 -0.60 56.47 16 12 O -0.96 -22.44 16.38 -57.17 -0.94 -23.38 16 13 O -0.98 -21.62 16.25 -57.17 -0.93 -22.55 16 14 N -0.84 -20.23 3.31 -66.69 -0.22 -20.45 16 15 C 0.13 2.99 8.60 59.85 0.51 3.50 16 16 C -0.33 -8.42 9.17 -15.06 -0.14 -8.56 16 17 H 0.10 2.40 7.68 -52.49 -0.40 2.00 16 18 C 0.04 1.13 5.12 -17.43 -0.09 1.04 16 19 N -0.88 -23.67 10.65 55.49 0.59 -23.08 16 20 Si 0.92 20.32 29.57 -169.99 -5.03 15.29 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 24 C -0.05 -0.72 9.52 -39.58 -0.38 -1.10 16 25 C -0.05 -0.68 9.47 -39.58 -0.37 -1.05 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.14 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.14 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.15 1.61 7.57 -52.49 -0.40 1.21 16 34 H 0.15 2.32 7.62 -52.49 -0.40 1.92 16 35 H 0.07 1.62 7.35 -51.93 -0.38 1.24 16 36 H 0.06 1.48 7.31 -51.93 -0.38 1.10 16 37 H 0.02 0.47 7.61 -51.93 -0.40 0.07 16 38 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.15 2.07 7.61 -52.48 -0.40 1.67 16 40 H 0.15 1.53 7.57 -52.49 -0.40 1.13 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -35.21 362.44 -10.68 -45.89 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.25 Total: -0.19 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: -1.25 Total: -32.61 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.37 Total: -43.53 kcal Atomic # 8 Polarization: -68.79 SS G_CDS: -3.84 Total: -72.62 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Atomic # 16 Polarization: 83.46 SS G_CDS: -1.16 Total: 82.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.21 -10.68 -45.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288673030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.689 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds