Wall clock time and date at job start Wed Apr 1 2020 04:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46842 * 2 1 4 4 S 1.81405 * 109.46987 * 179.97438 * 3 2 1 5 5 O 1.42097 * 110.54099 * 68.37794 * 4 3 2 6 6 O 1.42097 * 110.54071 * 291.62584 * 4 3 2 7 7 C 1.76199 * 104.44760 * 180.02562 * 4 3 2 8 8 C 1.38240 * 120.00251 * 90.00433 * 7 4 3 9 9 C 1.38235 * 120.00124 * 180.02562 * 8 7 4 10 10 C 1.38232 * 119.99910 * 359.97438 * 9 8 7 11 11 S 1.76207 * 119.99999 * 179.97438 * 10 9 8 12 12 O 1.42098 * 106.39880 * 336.45792 * 11 10 9 13 13 O 1.42105 * 106.40057 * 203.54273 * 11 10 9 14 14 N 1.65598 * 107.21755 * 89.99879 * 11 10 9 15 15 C 1.46503 * 119.99877 * 90.00256 * 14 11 10 16 16 C 1.36931 * 120.00246 * 270.00324 * 14 11 10 17 17 H 1.07998 * 120.00191 * 23.09372 * 16 14 11 18 18 C 1.38808 * 120.00150 * 203.10109 * 16 14 11 19 19 N 1.31623 * 120.00217 * 11.87751 * 18 16 14 20 20 Si 1.86800 * 120.00106 * 191.88281 * 18 16 14 21 21 H 1.48493 * 109.47126 * 59.99715 * 20 18 16 22 22 H 1.48497 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47243 * 299.99739 * 20 18 16 24 24 C 1.38236 * 120.00093 * 0.25487 * 10 9 8 25 25 C 1.38232 * 119.99972 * 359.49543 * 24 10 9 26 26 H 1.08999 * 109.47288 * 299.99814 * 1 2 3 27 27 H 1.08995 * 109.46946 * 60.00036 * 1 2 3 28 28 H 1.08995 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47288 * 240.00186 * 2 1 3 30 30 H 1.08995 * 109.46946 * 119.99964 * 2 1 3 31 31 H 1.09004 * 109.47477 * 59.99871 * 3 2 1 32 32 H 1.09000 * 109.47761 * 299.99872 * 3 2 1 33 33 H 1.07990 * 119.99543 * 359.97438 * 8 7 4 34 34 H 1.07997 * 119.99743 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.47187 * 95.05648 * 15 14 11 36 36 H 1.09001 * 109.47196 * 215.05760 * 15 14 11 37 37 H 1.09001 * 109.46796 * 335.05447 * 15 14 11 38 38 H 0.97000 * 120.00147 * 179.97438 * 19 18 16 39 39 H 1.08005 * 119.99999 * 179.72357 * 24 10 9 40 40 H 1.08001 * 120.00048 * 180.23078 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3532 0.9520 -1.2359 6 8 4.3521 0.9523 1.2380 7 6 4.2936 3.1488 0.0015 8 6 4.4656 3.8178 1.1989 9 6 4.8100 5.1566 1.1994 10 6 4.9828 5.8262 0.0025 11 16 5.4211 7.5329 0.0032 12 8 4.9925 8.0567 1.2526 13 8 4.9944 8.0572 -1.2468 14 7 7.0750 7.6143 0.0045 15 6 7.8076 7.6505 -1.2637 16 6 7.7580 7.6477 1.1909 17 1 7.3009 7.2577 2.0883 18 6 9.0378 8.1828 1.2402 19 7 9.5058 8.8651 0.2165 20 14 10.0961 7.9346 2.7593 21 1 10.3057 6.4819 2.9846 22 1 11.4094 8.5990 2.5617 23 1 9.4147 8.5252 3.9392 24 6 4.8062 5.1585 -1.1949 25 6 4.4669 3.8184 -1.1954 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 4.3302 3.2947 2.1339 34 1 4.9439 5.6793 2.1349 35 1 8.0174 8.6858 -1.5327 36 1 8.7457 7.1056 -1.1572 37 1 7.2050 7.1871 -2.0448 38 1 10.4000 9.2394 0.2511 39 1 4.9368 5.6828 -2.1300 40 1 4.3325 3.2958 -2.1309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288673030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:55 Heat of formation + Delta-G solvation = -131.766244 kcal Electronic energy + Delta-G solvation = -26326.103366 eV Core-core repulsion = 22359.947561 eV Total energy + Delta-G solvation = -3966.155806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.31327 -38.26974 -38.21759 -37.40172 -37.10462 -36.80908 -35.79197 -33.17021 -32.78673 -32.29475 -28.62678 -28.23529 -25.48799 -24.99012 -24.12944 -22.75859 -20.53632 -20.13952 -19.64541 -18.95008 -18.34368 -18.14673 -17.43267 -17.41070 -16.73661 -16.31243 -16.03619 -15.93897 -15.63949 -15.09259 -14.97407 -14.71850 -14.52578 -14.37058 -14.35793 -13.76730 -13.59025 -13.44106 -13.21755 -13.18497 -13.17649 -13.10985 -13.07459 -12.70692 -12.54736 -12.53828 -12.46914 -12.29309 -12.28378 -11.99119 -11.81785 -11.78735 -11.44356 -11.06839 -10.87863 -10.25456 -9.91668 -8.13115 -5.91793 -1.11439 -0.79135 -0.43433 0.06803 1.47080 1.48739 1.55781 1.70667 1.92991 2.30869 2.57097 2.80079 2.85625 3.02186 3.15746 3.31249 3.56546 3.65569 3.74586 3.86726 4.10819 4.22104 4.23872 4.39420 4.41877 4.47150 4.64678 4.69104 4.74038 4.75837 4.75992 4.90921 4.98845 5.10640 5.12633 5.23786 5.37879 5.50534 5.57407 5.72430 6.46816 7.03528 7.37164 8.89832 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.003092 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.346126 B = 9052.628134 C = 9666.257703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.578 4.578 4 S 2.499 3.501 5 O -0.961 6.961 6 O -0.964 6.964 7 C -0.620 4.620 8 C -0.050 4.050 9 C -0.054 4.054 10 C -0.628 4.628 11 S 2.679 3.321 12 O -0.988 6.988 13 O -0.993 6.993 14 N -0.870 5.870 15 C 0.141 3.859 16 C -0.337 4.337 17 H 0.099 0.901 18 C -0.008 4.008 19 N -0.913 5.913 20 Si 0.977 3.023 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.270 1.270 24 C -0.056 4.056 25 C -0.049 4.049 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.174 0.826 34 H 0.149 0.851 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.265 0.735 39 H 0.158 0.842 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 -17.475 -1.762 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.711 4.711 4 S 2.682 3.318 5 O -0.959 6.959 6 O -0.961 6.961 7 C -0.704 4.704 8 C -0.069 4.069 9 C -0.074 4.074 10 C -0.715 4.715 11 S 2.773 3.227 12 O -0.979 6.979 13 O -0.984 6.984 14 N -0.704 5.704 15 C -0.005 4.005 16 C -0.467 4.467 17 H 0.117 0.883 18 C -0.209 4.209 19 N -0.553 5.553 20 Si 0.801 3.199 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.195 1.195 24 C -0.076 4.076 25 C -0.068 4.068 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.192 0.808 34 H 0.167 0.833 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.176 0.824 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.135 -17.316 -1.835 23.739 hybrid contribution 0.831 0.619 0.612 1.203 sum -15.304 -16.698 -1.223 22.683 Atomic orbital electron populations 1.21759 0.92431 1.03218 1.03183 1.21525 0.99784 0.91282 1.04556 1.30190 1.18121 1.07599 1.15235 1.05565 0.80101 0.72546 0.73580 1.93542 1.79464 1.77677 1.45189 1.93544 1.79517 1.77750 1.45275 1.31261 1.13463 1.26392 0.99305 1.21366 0.93646 0.93509 0.98372 1.21286 0.93517 0.95476 0.97097 1.31529 1.11901 1.27270 1.00773 1.01906 0.73134 0.75357 0.72346 1.93450 1.81698 1.77852 1.44853 1.93466 1.82056 1.77957 1.44881 1.52719 1.20623 1.85861 1.11190 1.21030 0.95782 1.01161 0.82576 1.19357 1.00005 1.40253 0.87092 0.88317 1.25978 0.99153 0.95073 1.00719 1.70177 1.18236 1.34583 1.32348 0.85247 0.77449 0.78726 0.78473 1.19166 1.20766 1.19457 1.21350 0.93846 0.95464 0.96928 1.21402 0.93517 0.93578 0.98285 0.91581 0.91496 0.91098 0.89618 0.89736 0.81870 0.81698 0.80847 0.83287 0.94081 0.92924 0.92679 0.92564 0.82427 0.80456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 71.98 0.71 -0.16 16 2 C -0.13 -1.08 5.94 30.60 0.18 -0.90 16 3 C -0.58 -4.68 5.98 71.98 0.43 -4.25 16 4 S 2.50 45.40 5.16 -56.49 -0.29 45.11 16 5 O -0.96 -22.81 17.13 -127.65 -2.19 -25.00 16 6 O -0.96 -23.48 17.12 -127.65 -2.19 -25.67 16 7 C -0.62 -14.33 5.66 22.27 0.13 -14.21 16 8 C -0.05 -1.27 9.47 22.27 0.21 -1.05 16 9 C -0.05 -1.71 9.52 22.27 0.21 -1.50 16 10 C -0.63 -22.14 5.97 22.27 0.13 -22.01 16 11 S 2.68 117.21 5.60 -56.49 -0.32 116.90 16 12 O -0.99 -47.81 16.38 -128.00 -2.10 -49.90 16 13 O -0.99 -44.77 16.25 -128.00 -2.08 -46.85 16 14 N -0.87 -42.88 3.31 -364.90 -1.21 -44.09 16 15 C 0.14 6.60 8.60 127.77 1.10 7.70 16 16 C -0.34 -17.84 9.17 84.03 0.77 -17.07 16 17 H 0.10 5.01 7.68 -2.91 -0.02 4.99 16 18 C -0.01 -0.40 5.12 84.86 0.43 0.04 16 19 N -0.91 -50.30 10.65 21.65 0.23 -50.07 16 20 Si 0.98 42.11 29.57 68.60 2.03 44.14 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 C -0.06 -1.67 9.52 22.27 0.21 -1.45 16 25 C -0.05 -1.17 9.47 22.27 0.21 -0.96 16 26 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.16 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.17 0.59 8.14 -2.39 -0.02 0.58 16 33 H 0.17 3.36 7.57 -2.92 -0.02 3.34 16 34 H 0.15 4.64 7.62 -2.91 -0.02 4.62 16 35 H 0.04 2.08 7.35 -2.39 -0.02 2.06 16 36 H 0.05 2.53 7.31 -2.39 -0.02 2.52 16 37 H 0.05 2.16 7.61 -2.39 -0.02 2.14 16 38 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.16 4.23 7.61 -2.91 -0.02 4.21 16 40 H 0.18 3.07 7.57 -2.91 -0.02 3.05 16 Total: -1.00 -77.72 362.44 -2.32 -80.04 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.05 Total: 11.24 kcal Atomic # 6 Polarization: -60.57 SS G_CDS: 4.73 Total: -55.83 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -0.98 Total: -94.16 kcal Atomic # 8 Polarization: -138.87 SS G_CDS: -8.55 Total: -147.42 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 162.61 SS G_CDS: -0.61 Total: 162.00 kcal Total: -77.72 -2.32 -80.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288673030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.728 kcal (2) G-P(sol) polarization free energy of solvation -77.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds