Wall clock time and date at job start Wed Apr 1 2020 04:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 120.00022 * 2 1 4 4 S 1.65595 * 119.99954 * 179.97438 * 2 1 3 5 5 O 1.42097 * 106.40793 * 333.67269 * 4 2 1 6 6 O 1.42105 * 106.40286 * 200.75096 * 4 2 1 7 7 N 1.65600 * 107.21768 * 87.21240 * 4 2 1 8 8 C 1.36948 * 120.00051 * 272.22082 * 7 4 2 9 9 H 1.07998 * 119.99556 * 323.02223 * 8 7 4 10 10 C 1.38809 * 119.99856 * 143.02311 * 8 7 4 11 11 N 1.31619 * 119.99897 * 159.66455 * 10 8 7 12 12 Si 1.86802 * 120.00049 * 339.66337 * 10 8 7 13 13 H 1.48503 * 109.46751 * 95.43476 * 12 10 8 14 14 H 1.48498 * 109.47142 * 215.43390 * 12 10 8 15 15 H 1.48500 * 109.47282 * 335.43314 * 12 10 8 16 16 C 1.46498 * 120.00345 * 92.22285 * 7 4 2 17 17 C 1.50697 * 109.47553 * 94.99942 * 16 7 4 18 18 C 1.38225 * 120.01098 * 259.73177 * 17 16 7 19 19 C 1.38223 * 120.01921 * 179.71987 * 18 17 16 20 20 C 1.38271 * 120.05525 * 0.55083 * 19 18 17 21 21 N 1.48002 * 119.98845 * 179.70479 * 20 19 18 22 22 O 1.21801 * 119.99925 * 180.02562 * 21 20 19 23 23 O 1.21800 * 119.99746 * 0.02562 * 21 20 19 24 24 C 1.38174 * 120.02382 * 359.72292 * 20 19 18 25 25 C 1.38437 * 120.01094 * 80.00060 * 17 16 7 26 26 F 1.35095 * 120.03033 * 0.02562 * 25 17 16 27 27 H 1.08998 * 109.46763 * 174.73818 * 1 2 3 28 28 H 1.08998 * 109.46859 * 294.73365 * 1 2 3 29 29 H 1.08997 * 109.46861 * 54.73987 * 1 2 3 30 30 H 1.09000 * 109.46976 * 270.00363 * 3 2 1 31 31 H 1.09002 * 109.47276 * 29.99684 * 3 2 1 32 32 H 1.08999 * 109.47498 * 149.99595 * 3 2 1 33 33 H 0.97001 * 120.00364 * 179.97438 * 11 10 8 34 34 H 1.09002 * 109.47126 * 215.00429 * 16 7 4 35 35 H 1.09007 * 109.47149 * 334.99725 * 16 7 4 36 36 H 1.07992 * 119.99115 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.97003 * 180.27144 * 19 18 17 38 38 H 1.07999 * 120.01000 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4357 -2.3923 0.6056 6 8 3.5977 -1.1440 0.4835 7 7 2.4715 -1.8978 -1.5791 8 6 1.4976 -2.6436 -2.1880 9 1 0.9706 -3.4029 -1.6293 10 6 1.1881 -2.4238 -3.5231 11 7 0.5731 -3.3569 -4.2184 12 14 1.6442 -0.8034 -4.3331 13 1 2.9445 -0.9499 -5.0354 14 1 0.5929 -0.4259 -5.3116 15 1 1.7579 0.2536 -3.2963 16 6 3.6711 -1.5102 -2.3253 17 6 4.6850 -2.6232 -2.2598 18 6 5.7403 -2.5456 -1.3704 19 6 6.6671 -3.5691 -1.3062 20 6 6.5463 -4.6661 -2.1392 21 7 7.5432 -5.7580 -2.0737 22 8 7.4372 -6.7242 -2.8077 23 8 8.4696 -5.6904 -1.2858 24 6 5.4954 -4.7431 -3.0329 25 6 4.5629 -3.7210 -3.0943 26 9 3.5353 -3.7951 -3.9681 27 1 -0.3633 -1.0233 -0.0942 28 1 -0.3633 0.4300 0.9334 29 1 -0.3633 0.5933 -0.8391 30 1 2.3792 1.5834 -1.0277 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 0.3565 -3.2032 -5.1513 34 1 3.4065 -1.3204 -3.3655 35 1 4.0951 -0.6063 -1.8876 36 1 5.8384 -1.6871 -0.7227 37 1 7.4889 -3.5097 -0.6079 38 1 5.4010 -5.6002 -3.6832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289640595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:24 Heat of formation + Delta-G solvation = -85.253544 kcal Electronic energy + Delta-G solvation = -30060.748279 eV Core-core repulsion = 25562.688991 eV Total energy + Delta-G solvation = -4498.059288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.083 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.96257 -43.35788 -40.54068 -38.16970 -37.83164 -37.76848 -36.86265 -36.66555 -34.30021 -33.04641 -32.01867 -29.22077 -28.83674 -26.72167 -25.67976 -25.27296 -24.28673 -23.05172 -20.60854 -20.26800 -19.93079 -19.29743 -18.85031 -18.73943 -18.33192 -17.79202 -17.52939 -17.31932 -16.94399 -16.61203 -16.49985 -15.48022 -15.29013 -15.20366 -14.93493 -14.67547 -14.49870 -14.16168 -13.91115 -13.76987 -13.67945 -13.42472 -13.22684 -13.10718 -13.02889 -12.79807 -12.71573 -12.70164 -12.49978 -12.36237 -12.35416 -12.28387 -12.12571 -11.84018 -11.00740 -10.62322 -10.21422 -10.13126 -9.86543 -8.43723 -6.09543 -1.40347 -0.26417 -0.20536 0.16137 0.18807 1.22629 1.35883 1.43253 1.94152 2.19369 2.23280 2.71316 2.88804 2.94949 3.23942 3.33741 3.47892 3.53772 3.69884 3.95283 4.03551 4.07116 4.32163 4.43490 4.53787 4.58234 4.60960 4.71987 4.79095 4.88268 4.95144 4.98063 5.03697 5.08532 5.16120 5.38378 5.60854 5.80394 6.24234 6.43766 7.01417 7.08690 8.68694 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.005030 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.266796 B = 5565.384878 C = 6772.426323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.022 6.022 3 C 0.078 3.922 4 S 2.741 3.259 5 O -1.019 7.019 6 O -1.001 7.001 7 N -0.860 5.860 8 C -0.313 4.313 9 H 0.067 0.933 10 C 0.052 3.948 11 N -0.883 5.883 12 Si 0.909 3.091 13 H -0.261 1.261 14 H -0.294 1.294 15 H -0.229 1.229 16 C 0.137 3.863 17 C -0.090 4.090 18 C -0.066 4.066 19 C -0.058 4.058 20 C -0.030 4.030 21 N 0.034 4.966 22 O -0.192 6.192 23 O -0.142 6.142 24 C -0.107 4.107 25 C 0.116 3.884 26 F -0.113 7.113 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.277 0.723 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 10.586 3.215 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.862 5.862 3 C -0.067 4.067 4 S 2.759 3.241 5 O -1.003 7.003 6 O -0.985 6.985 7 N -0.690 5.690 8 C -0.449 4.449 9 H 0.085 0.915 10 C -0.157 4.157 11 N -0.519 5.519 12 Si 0.734 3.266 13 H -0.188 1.188 14 H -0.221 1.221 15 H -0.151 1.151 16 C 0.012 3.988 17 C -0.094 4.094 18 C -0.085 4.085 19 C -0.077 4.077 20 C -0.113 4.113 21 N 0.552 4.448 22 O -0.400 6.400 23 O -0.364 6.364 24 C -0.127 4.127 25 C 0.095 3.905 26 F -0.091 7.091 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.144 0.856 36 H 0.207 0.793 37 H 0.207 0.793 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.664 10.639 3.854 13.667 hybrid contribution -0.588 -0.230 -1.377 1.514 sum 7.075 10.410 2.477 12.828 Atomic orbital electron populations 1.21509 0.78531 1.02678 1.02682 1.58038 1.15702 1.22585 1.89845 1.21724 0.97373 0.85048 1.02545 1.04241 0.72446 0.73031 0.74430 1.93459 1.68898 1.61539 1.76403 1.93414 1.39364 1.85374 1.80341 1.53629 1.21951 1.61833 1.31623 1.18375 1.15989 1.14504 0.95999 0.91486 1.25905 0.94340 0.98794 0.96700 1.69913 1.39336 1.33244 1.09434 0.86429 0.77854 0.82540 0.79773 1.18806 1.22101 1.15118 1.20692 0.83756 0.95125 0.99269 1.21090 0.96877 0.96537 0.94880 1.21466 0.90689 1.00038 0.96296 1.21400 1.00540 0.89431 0.96322 1.20828 0.93673 0.91404 1.05401 1.43624 1.00910 1.01524 0.98785 1.94556 1.81654 1.23634 1.40144 1.94489 1.24049 1.84902 1.32995 1.20862 0.92450 0.99994 0.99371 1.17465 0.86246 0.95149 0.91684 1.91701 1.55516 1.95914 1.65967 0.92364 0.90673 0.91150 0.92411 0.88869 0.89989 0.91329 0.91062 0.85568 0.79300 0.79347 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.64 10.61 127.77 1.36 4.00 16 2 N -1.02 -31.69 3.64 -562.69 -2.05 -33.74 16 3 C 0.08 1.73 10.69 127.77 1.37 3.09 16 4 S 2.74 106.32 6.00 -56.49 -0.34 105.99 16 5 O -1.02 -48.52 15.83 -128.00 -2.03 -50.55 16 6 O -1.00 -35.79 14.87 -128.00 -1.90 -37.69 16 7 N -0.86 -35.26 2.54 -347.17 -0.88 -36.14 16 8 C -0.31 -15.41 8.83 84.03 0.74 -14.67 16 9 H 0.07 3.90 7.62 -2.91 -0.02 3.88 16 10 C 0.05 2.53 3.56 84.86 0.30 2.83 16 11 N -0.88 -47.04 13.97 21.65 0.30 -46.74 16 12 Si 0.91 36.18 24.84 68.60 1.70 37.88 16 13 H -0.26 -9.89 6.72 99.48 0.67 -9.22 16 14 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.23 -7.89 7.11 99.48 0.71 -7.18 16 16 C 0.14 4.72 4.16 85.63 0.36 5.07 16 17 C -0.09 -2.96 5.44 -19.82 -0.11 -3.07 16 18 C -0.07 -1.69 9.42 22.26 0.21 -1.48 16 19 C -0.06 -1.40 9.55 22.27 0.21 -1.19 16 20 C -0.03 -0.86 6.85 36.37 0.25 -0.61 16 21 N 0.03 1.03 4.45 -46.49 -0.21 0.82 16 22 O -0.19 -6.32 18.45 18.89 0.35 -5.97 16 23 O -0.14 -4.18 18.45 18.89 0.35 -3.83 16 24 C -0.11 -3.42 9.54 22.31 0.21 -3.21 16 25 C 0.12 4.19 7.16 22.38 0.16 4.35 16 26 F -0.11 -4.88 14.05 44.97 0.63 -4.25 16 27 H 0.06 2.02 7.09 -2.39 -0.02 2.00 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.55 8.07 -2.39 -0.02 1.53 16 32 H 0.08 1.74 7.00 -2.39 -0.02 1.72 16 33 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 34 H 0.07 2.59 2.62 -2.39 -0.01 2.58 16 35 H 0.13 3.28 7.41 -2.38 -0.02 3.26 16 36 H 0.19 3.93 7.56 -2.91 -0.02 3.91 16 37 H 0.19 3.34 7.61 -2.91 -0.02 3.32 16 38 H 0.16 5.00 7.61 -2.91 -0.02 4.98 16 Total: -1.00 -64.00 339.15 2.08 -61.93 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 1.09 Total: 17.18 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 5.06 Total: -4.89 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -2.83 Total: -115.80 kcal Atomic # 8 Polarization: -94.81 SS G_CDS: -3.23 Total: -98.04 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.63 Total: -4.25 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 1.70 Total: 37.88 kcal Atomic # 16 Polarization: 106.32 SS G_CDS: -0.34 Total: 105.99 kcal Total: -64.00 2.08 -61.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289640595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.326 kcal (2) G-P(sol) polarization free energy of solvation -64.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds