Wall clock time and date at job start Wed Apr 1 2020 04:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99936 * 2 1 4 4 S 1.65599 * 120.00337 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40241 * 336.45887 * 4 2 1 6 6 O 1.42096 * 106.40379 * 203.53509 * 4 2 1 7 7 C 1.76199 * 107.21658 * 89.99803 * 4 2 1 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 2 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00010 * 0.50740 * 9 8 7 11 11 S 1.76208 * 120.00056 * 179.72460 * 10 9 8 12 12 O 1.42100 * 104.27761 * 26.09288 * 11 10 9 13 13 O 1.42092 * 104.27555 * 153.95351 * 11 10 9 14 14 C 1.81398 * 104.44838 * 270.02581 * 11 10 9 15 15 C 1.53000 * 109.47085 * 180.02562 * 14 11 10 16 16 C 1.50708 * 109.47000 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00121 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99712 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00190 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00048 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47257 * 89.99555 * 20 18 16 22 22 H 1.48491 * 109.47713 * 209.99862 * 20 18 16 23 23 H 1.48505 * 109.47241 * 329.99965 * 20 18 16 24 24 C 1.38229 * 119.99860 * 359.74632 * 10 9 8 25 25 C 1.38234 * 120.00019 * 90.00010 * 7 4 2 26 26 H 1.09004 * 109.46766 * 269.99933 * 1 2 3 27 27 H 1.09001 * 109.47517 * 29.99808 * 1 2 3 28 28 H 1.08997 * 109.47269 * 150.00341 * 1 2 3 29 29 H 1.09002 * 109.46924 * 240.00267 * 3 2 1 30 30 H 1.09000 * 109.46877 * 0.02562 * 3 2 1 31 31 H 1.08996 * 109.47041 * 120.00124 * 3 2 1 32 32 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 33 33 H 1.08004 * 120.00393 * 180.23620 * 9 8 7 34 34 H 1.09003 * 109.47101 * 299.99975 * 14 11 10 35 35 H 1.08999 * 109.47584 * 59.99837 * 14 11 10 36 36 H 1.08999 * 109.47072 * 299.99363 * 15 14 11 37 37 H 1.08995 * 109.47358 * 59.99874 * 15 14 11 38 38 H 0.96998 * 119.99875 * 180.02562 * 19 18 16 39 39 H 1.08005 * 119.99920 * 179.97438 * 24 10 9 40 40 H 1.07999 * 120.00005 * 0.02562 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4115 -2.4063 0.5455 6 8 3.5760 -1.1564 0.5448 7 6 2.5538 -1.8865 -1.6822 8 6 1.6221 -2.6673 -2.3404 9 6 1.8243 -3.0182 -3.6620 10 6 2.9633 -2.5971 -4.3224 11 16 3.2246 -3.0504 -6.0050 12 8 1.9163 -3.2586 -6.5191 13 8 4.0588 -2.0216 -6.5196 14 6 4.1305 -4.6195 -5.9156 15 6 4.4210 -5.1220 -7.3312 16 6 5.1741 -6.4253 -7.2569 17 1 5.4212 -6.8522 -6.2961 18 6 5.5486 -7.0721 -8.4155 19 7 5.2481 -6.5520 -9.5855 20 14 6.4827 -8.6871 -8.3235 21 1 5.5183 -9.8162 -8.2993 22 1 7.3664 -8.8162 -9.5098 23 1 7.3061 -8.7130 -7.0878 24 6 3.8975 -1.8206 -3.6628 25 6 3.6928 -1.4653 -2.3426 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.8241 1.3265 -0.8900 30 1 1.4891 2.0972 0.0005 31 1 2.8241 1.3265 0.8899 32 1 0.7341 -2.9997 -1.8232 33 1 1.0946 -3.6251 -4.1774 34 1 5.0701 -4.4668 -5.3847 35 1 3.5287 -5.3567 -5.3843 36 1 3.4816 -5.2747 -7.8625 37 1 5.0230 -4.3847 -7.8621 38 1 5.5113 -7.0073 -10.4006 39 1 4.7876 -1.4919 -4.1786 40 1 4.4231 -0.8593 -1.8270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292725901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:17 Heat of formation + Delta-G solvation = -111.929069 kcal Electronic energy + Delta-G solvation = -25780.925898 eV Core-core repulsion = 21815.630297 eV Total energy + Delta-G solvation = -3965.295601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.47503 -37.70013 -36.78591 -36.65585 -36.24367 -35.62416 -33.99784 -31.94435 -31.45714 -31.26645 -28.60914 -25.73906 -25.22304 -24.11170 -23.29540 -21.64608 -19.57066 -18.97034 -18.46437 -17.89739 -17.41101 -16.72483 -16.53052 -15.96871 -15.45108 -15.24370 -15.11624 -14.96253 -14.66244 -14.60117 -13.92541 -13.83301 -13.71679 -13.54877 -13.40983 -13.12006 -12.73440 -12.58666 -12.45920 -12.19325 -12.01423 -11.87131 -11.82535 -11.74693 -11.59937 -11.58915 -11.13727 -11.05726 -10.81193 -10.48681 -10.45467 -10.14122 -9.77415 -9.61560 -9.41504 -9.24782 -8.56301 -6.18741 -4.24964 -0.22217 0.10706 0.41971 0.91154 2.39948 2.91059 3.17417 3.23196 3.29857 3.30937 3.32482 3.81280 4.12943 4.18470 4.22597 4.32838 4.50265 4.54950 4.79690 4.89337 4.92797 5.03930 5.07663 5.16837 5.23514 5.28134 5.29571 5.39786 5.45842 5.48598 5.56987 5.58456 5.59574 5.78531 5.95570 6.32707 6.40390 7.20375 7.25437 7.74099 8.08326 8.78407 9.40416 10.92139 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.002458 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.475555 B =11387.478553 C =11862.299039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.006 6.006 3 C 0.087 3.913 4 S 2.694 3.306 5 O -0.948 6.948 6 O -0.948 6.948 7 C -0.641 4.641 8 C -0.044 4.044 9 C -0.045 4.045 10 C -0.603 4.603 11 S 2.466 3.534 12 O -0.939 6.939 13 O -0.939 6.939 14 C -0.560 4.560 15 C 0.026 3.974 16 C -0.522 4.522 17 H 0.063 0.937 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.045 4.045 25 C -0.044 4.044 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.266 0.734 39 H 0.154 0.846 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 15.079 19.491 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.845 5.845 3 C -0.058 4.058 4 S 2.783 3.217 5 O -0.939 6.939 6 O -0.938 6.938 7 C -0.726 4.726 8 C -0.064 4.064 9 C -0.065 4.065 10 C -0.686 4.686 11 S 2.647 3.353 12 O -0.937 6.937 13 O -0.937 6.937 14 C -0.694 4.694 15 C -0.012 4.012 16 C -0.562 4.562 17 H 0.081 0.919 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.728 3.272 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.065 4.065 25 C -0.063 4.063 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.171 0.829 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.775 15.167 19.368 26.118 hybrid contribution 0.598 -1.063 -0.058 1.221 sum -8.177 14.104 19.310 25.272 Atomic orbital electron populations 1.21601 0.77637 1.03571 1.02657 1.57351 1.15593 1.21703 1.89889 1.21621 0.96864 0.84844 1.02432 1.02145 0.73297 0.72455 0.73845 1.93600 1.65986 1.58279 1.75986 1.93592 1.39917 1.84299 1.76037 1.31315 1.03665 1.11076 1.26593 1.21046 0.97430 0.93412 0.94516 1.21178 0.95221 0.95955 0.94125 1.31588 1.02059 1.07846 1.27072 1.06773 0.76233 0.78860 0.73431 1.93539 1.37125 1.86925 1.76076 1.93538 1.69156 1.54911 1.76058 1.30196 1.12414 1.15474 1.11344 1.19055 0.98944 0.98247 0.85004 1.20977 1.36802 1.05415 0.92999 0.91871 1.25060 0.95895 0.98138 0.95296 1.69949 1.46036 1.39244 0.97492 0.86446 0.79731 0.83187 0.77799 1.20404 1.20961 1.19706 1.21181 0.97909 0.93240 0.94147 1.21049 0.94667 0.96141 0.94492 0.91880 0.90546 0.90806 0.91974 0.89787 0.91108 0.83459 0.82877 0.85525 0.85525 0.94480 0.94471 0.92424 0.82875 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.26 59.85 0.61 1.08 16 2 N -1.01 -7.11 3.58 -129.20 -0.46 -7.57 16 3 C 0.09 0.45 10.30 59.85 0.62 1.07 16 4 S 2.69 26.97 5.65 -107.50 -0.61 26.37 16 5 O -0.95 -11.46 16.35 -57.17 -0.93 -12.40 16 6 O -0.95 -11.49 16.44 -57.17 -0.94 -12.43 16 7 C -0.64 -6.96 5.97 -39.58 -0.24 -7.20 16 8 C -0.04 -0.48 9.52 -39.58 -0.38 -0.86 16 9 C -0.05 -0.57 9.47 -39.59 -0.37 -0.94 16 10 C -0.60 -8.33 5.66 -39.59 -0.22 -8.56 16 11 S 2.47 41.45 5.16 -107.50 -0.55 40.90 16 12 O -0.94 -17.97 17.13 -57.54 -0.99 -18.96 16 13 O -0.94 -17.98 17.13 -57.54 -0.99 -18.96 16 14 C -0.56 -10.00 5.92 37.16 0.22 -9.78 16 15 C 0.03 0.64 4.98 -27.88 -0.14 0.50 16 16 C -0.52 -13.95 9.11 -34.44 -0.31 -14.27 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C -0.05 -0.57 9.47 -39.59 -0.37 -0.94 16 25 C -0.04 -0.48 9.52 -39.58 -0.38 -0.86 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.25 7.92 -51.93 -0.41 -0.16 16 28 H 0.07 0.36 7.79 -51.93 -0.40 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.25 7.79 -51.93 -0.40 -0.15 16 31 H 0.07 0.37 8.01 -51.93 -0.42 -0.05 16 32 H 0.15 1.24 7.61 -52.48 -0.40 0.84 16 33 H 0.15 1.67 7.57 -52.48 -0.40 1.27 16 34 H 0.13 1.99 8.14 -51.92 -0.42 1.57 16 35 H 0.13 1.98 8.14 -51.92 -0.42 1.56 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.15 1.67 7.57 -52.48 -0.40 1.28 16 40 H 0.15 1.25 7.62 -52.49 -0.40 0.85 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -37.35 368.02 -10.58 -47.93 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.31 Total: -1.92 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: -1.06 Total: -39.22 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.27 Total: -32.61 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -3.85 Total: -62.74 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 68.42 SS G_CDS: -1.16 Total: 67.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.35 -10.58 -47.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292725901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.999 kcal (2) G-P(sol) polarization free energy of solvation -37.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds