Wall clock time and date at job start Wed Apr 1 2020 04:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99936 * 2 1 4 4 S 1.65599 * 120.00337 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40241 * 336.45887 * 4 2 1 6 6 O 1.42096 * 106.40379 * 203.53509 * 4 2 1 7 7 C 1.76199 * 107.21658 * 89.99803 * 4 2 1 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 2 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00010 * 0.50740 * 9 8 7 11 11 S 1.76208 * 120.00056 * 179.72460 * 10 9 8 12 12 O 1.42100 * 104.27761 * 26.09288 * 11 10 9 13 13 O 1.42092 * 104.27555 * 153.95351 * 11 10 9 14 14 C 1.81398 * 104.44838 * 270.02581 * 11 10 9 15 15 C 1.53000 * 109.47085 * 180.02562 * 14 11 10 16 16 C 1.50708 * 109.47000 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00121 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99712 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00190 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00048 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47257 * 89.99555 * 20 18 16 22 22 H 1.48491 * 109.47713 * 209.99862 * 20 18 16 23 23 H 1.48505 * 109.47241 * 329.99965 * 20 18 16 24 24 C 1.38229 * 119.99860 * 359.74632 * 10 9 8 25 25 C 1.38234 * 120.00019 * 90.00010 * 7 4 2 26 26 H 1.09004 * 109.46766 * 269.99933 * 1 2 3 27 27 H 1.09001 * 109.47517 * 29.99808 * 1 2 3 28 28 H 1.08997 * 109.47269 * 150.00341 * 1 2 3 29 29 H 1.09002 * 109.46924 * 240.00267 * 3 2 1 30 30 H 1.09000 * 109.46877 * 0.02562 * 3 2 1 31 31 H 1.08996 * 109.47041 * 120.00124 * 3 2 1 32 32 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 33 33 H 1.08004 * 120.00393 * 180.23620 * 9 8 7 34 34 H 1.09003 * 109.47101 * 299.99975 * 14 11 10 35 35 H 1.08999 * 109.47584 * 59.99837 * 14 11 10 36 36 H 1.08999 * 109.47072 * 299.99363 * 15 14 11 37 37 H 1.08995 * 109.47358 * 59.99874 * 15 14 11 38 38 H 0.96998 * 119.99875 * 180.02562 * 19 18 16 39 39 H 1.08005 * 119.99920 * 179.97438 * 24 10 9 40 40 H 1.07999 * 120.00005 * 0.02562 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4115 -2.4063 0.5455 6 8 3.5760 -1.1564 0.5448 7 6 2.5538 -1.8865 -1.6822 8 6 1.6221 -2.6673 -2.3404 9 6 1.8243 -3.0182 -3.6620 10 6 2.9633 -2.5971 -4.3224 11 16 3.2246 -3.0504 -6.0050 12 8 1.9163 -3.2586 -6.5191 13 8 4.0588 -2.0216 -6.5196 14 6 4.1305 -4.6195 -5.9156 15 6 4.4210 -5.1220 -7.3312 16 6 5.1741 -6.4253 -7.2569 17 1 5.4212 -6.8522 -6.2961 18 6 5.5486 -7.0721 -8.4155 19 7 5.2481 -6.5520 -9.5855 20 14 6.4827 -8.6871 -8.3235 21 1 5.5183 -9.8162 -8.2993 22 1 7.3664 -8.8162 -9.5098 23 1 7.3061 -8.7130 -7.0878 24 6 3.8975 -1.8206 -3.6628 25 6 3.6928 -1.4653 -2.3426 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.8241 1.3265 -0.8900 30 1 1.4891 2.0972 0.0005 31 1 2.8241 1.3265 0.8899 32 1 0.7341 -2.9997 -1.8232 33 1 1.0946 -3.6251 -4.1774 34 1 5.0701 -4.4668 -5.3847 35 1 3.5287 -5.3567 -5.3843 36 1 3.4816 -5.2747 -7.8625 37 1 5.0230 -4.3847 -7.8621 38 1 5.5113 -7.0073 -10.4006 39 1 4.7876 -1.4919 -4.1786 40 1 4.4231 -0.8593 -1.8270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292725901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:16 Heat of formation + Delta-G solvation = -140.581869 kcal Electronic energy + Delta-G solvation = -25782.168377 eV Core-core repulsion = 21815.630297 eV Total energy + Delta-G solvation = -3966.538080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.39586 -38.54744 -38.24200 -37.19701 -37.08498 -37.03987 -35.91796 -33.17659 -32.87793 -32.35735 -28.98571 -27.63745 -25.73843 -25.11661 -24.19613 -23.44476 -20.34748 -20.18388 -19.44215 -18.94920 -18.52649 -18.09644 -17.59099 -17.00597 -16.99077 -16.53167 -16.18105 -16.02166 -15.56500 -15.38758 -15.15958 -14.77832 -14.77139 -14.54533 -14.42294 -14.16374 -13.75009 -13.53286 -13.42589 -13.30588 -13.24150 -13.15507 -12.94374 -12.81817 -12.68836 -12.65133 -12.59401 -12.54565 -12.26630 -12.15818 -11.95143 -11.66422 -11.21921 -10.91656 -10.64623 -10.31194 -10.11534 -8.26732 -6.40325 -1.17140 -0.88192 -0.72847 0.01137 1.41883 1.42821 1.53982 1.66715 1.84458 2.09056 2.37947 2.54148 2.79708 3.01664 3.04770 3.07588 3.56023 3.68714 3.79466 3.97448 3.99003 4.06131 4.20988 4.33802 4.48376 4.56365 4.58288 4.68807 4.70385 4.72115 4.73965 4.84004 4.95620 4.98831 5.00487 5.26300 5.27206 5.48283 5.50353 5.68026 6.04619 6.73310 7.29937 8.85416 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.002458 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.475555 B =11387.478553 C =11862.299039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.000 6.000 3 C 0.075 3.925 4 S 2.710 3.290 5 O -0.970 6.970 6 O -0.970 6.970 7 C -0.639 4.639 8 C -0.045 4.045 9 C -0.055 4.055 10 C -0.608 4.608 11 S 2.489 3.511 12 O -0.968 6.968 13 O -0.968 6.968 14 C -0.563 4.563 15 C 0.018 3.982 16 C -0.539 4.539 17 H 0.076 0.924 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.972 3.028 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.055 4.055 25 C -0.044 4.044 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.173 0.827 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.268 0.732 39 H 0.164 0.836 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 15.495 22.023 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.841 5.841 3 C -0.069 4.069 4 S 2.798 3.202 5 O -0.960 6.960 6 O -0.961 6.961 7 C -0.724 4.724 8 C -0.064 4.064 9 C -0.074 4.074 10 C -0.695 4.695 11 S 2.674 3.326 12 O -0.966 6.966 13 O -0.966 6.966 14 C -0.695 4.695 15 C -0.021 4.021 16 C -0.578 4.578 17 H 0.094 0.906 18 C -0.200 4.200 19 N -0.572 5.572 20 Si 0.795 3.205 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.074 4.074 25 C -0.064 4.064 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.087 0.913 32 H 0.190 0.810 33 H 0.182 0.818 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.181 0.819 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.037 15.556 21.853 28.305 hybrid contribution 0.600 -1.050 -0.707 1.400 sum -8.437 14.506 21.146 26.996 Atomic orbital electron populations 1.21888 0.76321 1.04881 1.03613 1.57181 1.16387 1.21152 1.89429 1.21894 0.97670 0.84604 1.02755 1.01576 0.72685 0.72707 0.73222 1.93569 1.66340 1.59797 1.76311 1.93561 1.41348 1.84775 1.76376 1.31611 1.03408 1.10314 1.27033 1.21360 0.98312 0.92857 0.93905 1.21420 0.94961 0.96151 0.94906 1.30905 1.03817 1.10114 1.24687 1.05577 0.74964 0.77656 0.74390 1.93495 1.38115 1.87051 1.77893 1.93493 1.69781 1.55411 1.77880 1.30087 1.14560 1.17230 1.07662 1.18897 0.97148 0.97448 0.88569 1.21505 1.36465 1.06279 0.93589 0.90550 1.26066 0.96961 1.02032 0.94959 1.70088 1.47656 1.41136 0.98329 0.85345 0.78422 0.78545 0.78158 1.19644 1.20869 1.18280 1.21420 0.98044 0.93059 0.94923 1.21356 0.95195 0.95975 0.93885 0.91190 0.88232 0.90624 0.91333 0.87221 0.91257 0.80957 0.81835 0.83264 0.83237 0.96910 0.96905 0.92349 0.81855 0.80987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.26 127.77 1.31 1.89 16 2 N -1.00 -11.45 3.58 -562.68 -2.02 -13.47 16 3 C 0.08 0.57 10.30 127.77 1.32 1.88 16 4 S 2.71 48.38 5.65 -56.49 -0.32 48.06 16 5 O -0.97 -21.54 16.35 -128.00 -2.09 -23.63 16 6 O -0.97 -21.66 16.44 -128.00 -2.10 -23.77 16 7 C -0.64 -12.36 5.97 22.27 0.13 -12.22 16 8 C -0.04 -0.87 9.52 22.27 0.21 -0.66 16 9 C -0.05 -1.27 9.47 22.27 0.21 -1.06 16 10 C -0.61 -16.10 5.66 22.27 0.13 -15.97 16 11 S 2.49 84.47 5.16 -56.49 -0.29 84.17 16 12 O -0.97 -37.75 17.13 -127.65 -2.19 -39.94 16 13 O -0.97 -37.78 17.13 -127.65 -2.19 -39.97 16 14 C -0.56 -20.09 5.92 71.98 0.43 -19.66 16 15 C 0.02 0.90 4.98 29.85 0.15 1.05 16 16 C -0.54 -29.08 9.11 25.60 0.23 -28.85 16 17 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 18 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 19 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 20 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 24 C -0.06 -1.28 9.47 22.27 0.21 -1.07 16 25 C -0.04 -0.87 9.52 22.27 0.21 -0.66 16 26 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.10 0.29 7.92 -2.39 -0.02 0.28 16 28 H 0.08 0.55 7.79 -2.39 -0.02 0.53 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.27 7.79 -2.39 -0.02 0.26 16 31 H 0.07 0.56 8.01 -2.39 -0.02 0.54 16 32 H 0.17 2.42 7.61 -2.91 -0.02 2.39 16 33 H 0.16 3.35 7.57 -2.91 -0.02 3.33 16 34 H 0.15 4.57 8.14 -2.39 -0.02 4.55 16 35 H 0.15 4.57 8.14 -2.39 -0.02 4.55 16 36 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.16 3.36 7.57 -2.91 -0.02 3.34 16 40 H 0.17 2.45 7.62 -2.91 -0.02 2.43 16 Total: -1.00 -81.39 368.02 -2.84 -84.23 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.05 Total: 9.97 kcal Atomic # 6 Polarization: -79.96 SS G_CDS: 5.00 Total: -74.96 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -1.73 Total: -68.83 kcal Atomic # 8 Polarization: -118.74 SS G_CDS: -8.57 Total: -127.31 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 132.84 SS G_CDS: -0.61 Total: 132.23 kcal Total: -81.39 -2.84 -84.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292725901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.350 kcal (2) G-P(sol) polarization free energy of solvation -81.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds