Wall clock time and date at job start Wed Apr 1 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46765 * 2 1 4 4 N 1.46497 * 109.47006 * 186.43499 * 3 2 1 5 5 C 1.36871 * 119.99701 * 282.18541 * 4 3 2 6 6 H 1.07997 * 120.00334 * 236.46540 * 5 4 3 7 7 C 1.39052 * 120.00250 * 56.46988 * 5 4 3 8 8 N 1.31361 * 120.00050 * 41.94490 * 7 5 4 9 9 Si 1.86800 * 119.99945 * 221.95743 * 7 5 4 10 10 H 1.48507 * 109.47207 * 89.99541 * 9 7 5 11 11 H 1.48494 * 109.47131 * 209.99288 * 9 7 5 12 12 H 1.48499 * 109.47205 * 329.99340 * 9 7 5 13 13 C 1.34775 * 120.00501 * 102.18281 * 4 3 2 14 14 O 1.21594 * 120.00345 * 186.98362 * 13 4 3 15 15 C 1.47728 * 119.99750 * 6.99511 * 13 4 3 16 16 C 1.39647 * 120.15371 * 128.55931 * 15 13 4 17 17 C 1.37939 * 119.84510 * 180.02562 * 16 15 13 18 18 C 1.38376 * 120.15347 * 359.97438 * 17 16 15 19 19 S 1.76192 * 119.85039 * 179.97438 * 18 17 16 20 20 O 1.42099 * 104.27830 * 206.07187 * 19 18 17 21 21 O 1.42105 * 104.27243 * 333.92793 * 19 18 17 22 22 C 1.81401 * 104.45269 * 89.99559 * 19 18 17 23 23 F 1.39897 * 109.47341 * 300.00556 * 22 19 18 24 24 F 1.39900 * 109.46606 * 60.00501 * 22 19 18 25 25 C 1.38380 * 120.30247 * 0.25657 * 18 17 16 26 26 C 1.37937 * 120.15142 * 359.48855 * 25 18 17 27 27 H 1.09003 * 109.47402 * 299.99850 * 1 2 3 28 28 H 1.09003 * 109.47748 * 59.99977 * 1 2 3 29 29 H 1.08998 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47051 * 240.00731 * 2 1 3 31 31 H 1.08993 * 109.47444 * 119.99529 * 2 1 3 32 32 H 1.08995 * 109.47066 * 66.43301 * 3 2 1 33 33 H 1.09006 * 109.47106 * 306.43193 * 3 2 1 34 34 H 0.96997 * 119.99786 * 180.02562 * 8 7 5 35 35 H 1.07992 * 120.07547 * 359.97438 * 16 15 13 36 36 H 1.08000 * 119.92406 * 179.97438 * 17 16 15 37 37 H 1.09000 * 109.47230 * 180.02562 * 22 19 18 38 38 H 1.08002 * 119.92442 * 179.74686 * 25 18 17 39 39 H 1.08005 * 120.07478 * 180.25386 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4967 1.4456 -0.1548 5 6 4.2991 1.1536 0.9149 6 1 5.0529 1.8586 1.2328 7 6 4.1438 -0.0507 1.5924 8 7 3.9462 -1.1618 0.9201 9 14 4.2158 -0.0886 3.4586 10 1 2.8520 0.1123 4.0109 11 1 4.7429 -1.4024 3.9071 12 1 5.1099 0.9944 3.9416 13 6 4.0468 1.7357 -1.3505 14 8 5.2457 1.6150 -1.5135 15 6 3.1932 2.2005 -2.4630 16 6 3.5213 3.3656 -3.1594 17 6 2.7195 3.7941 -4.1968 18 6 1.5925 3.0721 -4.5482 19 16 0.5736 3.6271 -5.8741 20 8 -0.7099 3.0949 -5.5763 21 8 0.7921 5.0305 -5.9202 22 6 1.2692 2.8260 -7.3456 23 9 2.6004 3.2240 -7.5079 24 9 1.2134 1.4367 -7.1903 25 6 1.2589 1.9193 -3.8592 26 6 2.0547 1.4765 -2.8232 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.7736 1.9221 0.9419 33 1 1.5856 1.9886 -0.8269 34 1 3.8375 -2.0018 1.3927 35 1 4.4003 3.9302 -2.8859 36 1 2.9718 4.6952 -4.7360 37 1 0.6935 3.1171 -8.2242 38 1 0.3757 1.3627 -4.1360 39 1 1.7954 0.5743 -2.2890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299161019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:37 Heat of formation + Delta-G solvation = -165.196798 kcal Electronic energy + Delta-G solvation = -29012.356801 eV Core-core repulsion = 24490.910951 eV Total energy + Delta-G solvation = -4521.445850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.33333 -48.50540 -41.30804 -39.29432 -38.57998 -37.46051 -37.30523 -34.49261 -33.41979 -32.49941 -32.19199 -28.66298 -27.68985 -26.88449 -24.85758 -23.93731 -22.37903 -21.34830 -20.78645 -19.64348 -19.29669 -19.06146 -18.75844 -18.37713 -17.95161 -17.13165 -17.01512 -16.48277 -16.14809 -16.07482 -15.62328 -15.36701 -15.30175 -15.24450 -14.97160 -14.75819 -14.48889 -14.17640 -14.09988 -13.96932 -13.86934 -13.63144 -13.56103 -13.44565 -13.16633 -12.86312 -12.73072 -12.60385 -12.34977 -12.29271 -12.10761 -11.98138 -11.66713 -11.52525 -10.82715 -10.44588 -10.25604 -10.09162 -9.36683 -8.45859 -6.17723 -1.73063 -0.54968 0.19053 1.17391 1.34586 1.42414 1.52945 1.80391 2.18862 2.27023 2.41467 2.53443 2.73216 2.84803 2.92116 3.10090 3.28296 3.68445 3.77075 3.80995 4.15933 4.17326 4.27088 4.33468 4.46670 4.57169 4.71420 4.79752 4.81772 4.87226 4.94522 5.08006 5.26373 5.28070 5.37938 5.50105 5.63410 5.75452 6.25215 6.53090 7.12722 7.28570 7.99666 8.51807 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.003186 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.872765 B = 8787.043378 C = 9270.104336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.101 3.899 4 N -0.436 5.436 5 C -0.398 4.398 6 H 0.055 0.945 7 C 0.049 3.951 8 N -0.834 5.834 9 Si 0.956 3.044 10 H -0.255 1.255 11 H -0.280 1.280 12 H -0.271 1.271 13 C 0.479 3.521 14 O -0.615 6.615 15 C -0.061 4.061 16 C -0.116 4.116 17 C -0.012 4.012 18 C -0.663 4.663 19 S 2.511 3.489 20 O -0.903 6.903 21 O -0.905 6.905 22 C -0.201 4.201 23 F -0.173 7.173 24 F -0.172 7.172 25 C -0.014 4.014 26 C -0.126 4.126 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.276 0.724 35 H 0.134 0.866 36 H 0.175 0.825 37 H 0.212 0.788 38 H 0.176 0.824 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 6.965 -14.830 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C -0.022 4.022 4 N -0.154 5.154 5 C -0.524 4.524 6 H 0.073 0.927 7 C -0.162 4.162 8 N -0.465 5.465 9 Si 0.778 3.222 10 H -0.179 1.179 11 H -0.205 1.205 12 H -0.195 1.195 13 C 0.269 3.731 14 O -0.501 6.501 15 C -0.064 4.064 16 C -0.136 4.136 17 C -0.031 4.031 18 C -0.750 4.750 19 S 2.682 3.318 20 O -0.900 6.900 21 O -0.902 6.902 22 C -0.338 4.338 23 F -0.154 7.154 24 F -0.154 7.154 25 C -0.033 4.033 26 C -0.145 4.145 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.192 0.808 37 H 0.228 0.772 38 H 0.193 0.807 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.931 7.173 -14.870 21.602 hybrid contribution 1.696 -1.082 1.110 2.298 sum -12.235 6.091 -13.760 19.394 Atomic orbital electron populations 1.21759 0.93549 1.02240 1.02582 1.21948 0.96251 0.96237 1.02343 1.22055 0.80415 0.97757 1.01949 1.43582 1.05924 1.59392 1.06459 1.18845 1.22532 1.03293 1.07679 0.92695 1.26146 0.93414 0.92948 1.03709 1.70408 1.38824 0.98552 1.38673 0.85579 0.79663 0.77723 0.79208 1.17950 1.20544 1.19530 1.19471 0.87905 0.82174 0.83554 1.90594 1.17767 1.58993 1.82794 1.20701 0.94608 0.95922 0.95179 1.21420 1.00448 0.95540 0.96169 1.21116 0.90190 0.97917 0.93840 1.30479 1.14567 1.08262 1.21738 1.06126 0.74858 0.75135 0.75720 1.93639 1.34906 1.80408 1.81068 1.93638 1.85643 1.25993 1.84946 1.33074 0.89363 0.85465 1.25947 1.93098 1.35162 1.89850 1.97311 1.93101 1.96375 1.28842 1.97067 1.21153 0.98056 0.92594 0.91508 1.21791 0.93418 1.00795 0.98531 0.92120 0.91272 0.92087 0.93882 0.92234 0.91457 0.89757 0.91420 0.84824 0.80781 0.77191 0.80678 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.91 71.98 0.71 -3.23 16 2 C -0.13 -4.96 4.39 30.60 0.13 -4.83 16 3 C 0.10 4.08 4.80 86.38 0.41 4.50 16 4 N -0.44 -22.32 2.56 -638.93 -1.64 -23.96 16 5 C -0.40 -22.50 8.41 84.10 0.71 -21.79 16 6 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 7 C 0.05 2.58 3.94 84.96 0.33 2.92 16 8 N -0.83 -44.76 11.52 21.68 0.25 -44.51 16 9 Si 0.96 40.32 29.69 68.60 2.04 42.36 16 10 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 11 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 13 C 0.48 24.98 7.15 86.75 0.62 25.60 16 14 O -0.62 -37.96 17.03 -4.01 -0.07 -38.03 16 15 C -0.06 -2.42 4.94 -20.09 -0.10 -2.52 16 16 C -0.12 -3.90 9.75 22.54 0.22 -3.68 16 17 C -0.01 -0.30 9.45 22.23 0.21 -0.09 16 18 C -0.66 -15.19 5.66 22.34 0.13 -15.06 16 19 S 2.51 39.27 5.39 -56.49 -0.30 38.97 16 20 O -0.90 -17.03 17.10 -127.65 -2.18 -19.21 16 21 O -0.90 -17.24 17.11 -127.65 -2.18 -19.43 16 22 C -0.20 -2.30 5.94 113.37 0.67 -1.63 16 23 F -0.17 -2.82 17.37 44.97 0.78 -2.04 16 24 F -0.17 -2.82 17.37 44.97 0.78 -2.04 16 25 C -0.01 -0.36 9.45 22.23 0.21 -0.15 16 26 C -0.13 -4.17 7.43 22.54 0.17 -4.00 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.80 6.52 -2.39 -0.02 1.78 16 31 H 0.06 2.62 5.41 -2.39 -0.01 2.61 16 32 H 0.07 2.63 8.13 -2.39 -0.02 2.61 16 33 H 0.08 2.97 4.96 -2.38 -0.01 2.96 16 34 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 35 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.17 3.26 7.56 -2.91 -0.02 3.24 16 37 H 0.21 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.18 3.24 7.55 -2.91 -0.02 3.22 16 39 H 0.14 4.80 4.79 -2.91 -0.01 4.79 16 Total: -1.00 -79.27 349.57 3.01 -76.26 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.11 Total: 15.60 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 4.43 Total: -23.98 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.39 Total: -68.46 kcal Atomic # 8 Polarization: -72.23 SS G_CDS: -4.44 Total: -76.67 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 1.56 Total: -4.07 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.04 Total: 42.36 kcal Atomic # 16 Polarization: 39.27 SS G_CDS: -0.30 Total: 38.97 kcal Total: -79.27 3.01 -76.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299161019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.939 kcal (2) G-P(sol) polarization free energy of solvation -79.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds