Wall clock time and date at job start Wed Apr 1 2020 05:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00061 * 2 1 4 4 N 1.46499 * 109.47485 * 124.99591 * 3 2 1 5 5 C 1.46507 * 119.99840 * 274.83339 * 4 3 2 6 6 C 1.50702 * 109.46728 * 263.66116 * 5 4 3 7 7 H 1.08000 * 120.00218 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99957 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99374 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00029 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46782 * 90.00388 * 10 8 6 12 12 H 1.48492 * 109.46947 * 209.99955 * 10 8 6 13 13 H 1.48497 * 109.47111 * 330.00274 * 10 8 6 14 14 C 1.34775 * 120.00113 * 94.82768 * 4 3 2 15 15 O 1.21362 * 119.99695 * 354.62487 * 14 4 3 16 16 C 1.49352 * 120.00028 * 174.62649 * 14 4 3 17 17 O 1.21377 * 119.99751 * 0.24629 * 16 14 4 18 18 N 1.34770 * 120.00088 * 180.24470 * 16 14 4 19 19 C 1.39795 * 120.00323 * 184.84643 * 18 16 14 20 20 C 1.38613 * 120.00141 * 326.23031 * 19 18 16 21 21 C 1.39540 * 119.77796 * 179.97438 * 20 19 18 22 22 C 1.43208 * 120.10265 * 180.02562 * 21 20 19 23 23 N 9.31423 * 131.75481 * 280.20196 * 3 1 2 24 24 C 1.39708 * 119.79864 * 359.75243 * 21 20 19 25 25 C 1.37951 * 120.00397 * 0.52424 * 24 21 20 26 26 C 1.38363 * 120.22163 * 359.45135 * 25 24 21 27 27 Cl 1.73600 * 119.89824 * 180.27745 * 26 25 24 28 28 H 1.08004 * 120.00018 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00309 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99726 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47077 * 4.99703 * 3 2 1 32 32 H 1.09005 * 109.47192 * 244.99792 * 3 2 1 33 33 H 1.08997 * 109.47338 * 23.66198 * 5 4 3 34 34 H 1.08993 * 109.47150 * 143.66348 * 5 4 3 35 35 H 0.97006 * 119.99222 * 179.97438 * 9 8 6 36 36 H 0.97010 * 119.99959 * 4.83890 * 18 16 14 37 37 H 1.07993 * 120.11277 * 359.96010 * 20 19 18 38 38 H 1.08000 * 119.99840 * 180.25190 * 24 21 20 39 39 H 1.08001 * 119.88932 * 179.72943 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5292 1.7658 2.4515 6 6 2.8596 3.2232 2.6462 7 1 3.3646 3.7715 1.8648 8 6 2.5162 3.8569 3.8217 9 7 1.9007 3.1892 4.7730 10 14 2.9263 5.6632 4.0634 11 1 1.7984 6.4965 3.5750 12 1 3.1508 5.9309 5.5066 13 1 4.1557 5.9979 3.3007 14 6 4.2768 0.9576 0.9581 15 8 4.6382 0.5061 -0.1089 16 6 5.2537 1.0982 2.0790 17 8 4.8911 1.5456 3.1474 18 7 6.5378 0.7284 1.9040 19 6 7.4285 0.7645 2.9809 20 6 7.2996 1.7426 3.9546 21 6 8.1910 1.7738 5.0277 22 6 8.0639 2.7809 6.0379 23 7 7.9636 3.5805 6.8386 24 6 9.2043 0.8162 5.1168 25 6 9.3281 -0.1500 4.1399 26 6 8.4443 -0.1818 3.0758 27 17 8.6035 -1.4057 1.8550 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4026 -0.9314 33 1 1.4506 1.6253 2.5214 34 1 3.0233 1.1750 3.2227 35 1 1.6594 3.6349 5.6001 36 1 6.8441 0.4372 1.0309 37 1 6.5122 2.4781 3.8828 38 1 9.8934 0.8349 5.9481 39 1 10.1148 -0.8867 4.2083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340625295.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:41 Heat of formation + Delta-G solvation = 8.464033 kcal Electronic energy + Delta-G solvation = -27540.773217 eV Core-core repulsion = 23475.503346 eV Total energy + Delta-G solvation = -4065.269871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20622 -40.76740 -39.36420 -38.02725 -37.54134 -37.23614 -35.86829 -35.02432 -33.82254 -32.26310 -31.11655 -29.44872 -27.97159 -25.71591 -25.17930 -24.71555 -23.19178 -21.29621 -20.71966 -20.20766 -18.84646 -18.50293 -17.97678 -17.84059 -17.13261 -16.98073 -16.89972 -16.36365 -16.14184 -15.93083 -15.28767 -15.08754 -14.96319 -14.63315 -14.57419 -14.34562 -14.22408 -14.09879 -14.01932 -13.62479 -13.25666 -13.07224 -12.97374 -12.84591 -12.67873 -12.50317 -12.41298 -12.27944 -12.01450 -11.93721 -11.71598 -11.57862 -10.68951 -10.46762 -10.14373 -9.94196 -9.68258 -9.35984 -8.17187 -6.24003 -0.55886 -0.02472 0.53902 0.92680 1.11071 1.32608 1.36667 1.42844 1.45540 1.59128 1.72058 2.19743 2.36240 2.57312 2.68310 2.76291 3.17813 3.34866 3.61346 3.96393 4.04000 4.07232 4.12353 4.17042 4.47038 4.65821 4.71234 4.77970 4.83253 4.95487 5.03861 5.12098 5.16075 5.35251 5.45619 5.58333 5.68593 5.73422 5.84278 5.97580 6.09315 6.27923 6.32184 6.69520 6.80376 7.02573 7.41728 8.90745 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008175 B = 0.004913 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.186263 B = 5697.322995 C = 8631.088817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.183 4.183 3 C 0.137 3.863 4 N -0.560 5.560 5 C 0.251 3.749 6 C -0.512 4.512 7 H 0.047 0.953 8 C 0.028 3.972 9 N -0.918 5.918 10 Si 0.938 3.062 11 H -0.267 1.267 12 H -0.292 1.292 13 H -0.275 1.275 14 C 0.506 3.494 15 O -0.554 6.554 16 C 0.491 3.509 17 O -0.463 6.463 18 N -0.644 5.644 19 C 0.147 3.853 20 C -0.083 4.083 21 C -0.013 4.013 22 C 0.276 3.724 23 N -0.457 5.457 24 C -0.050 4.050 25 C -0.074 4.074 26 C -0.034 4.034 27 Cl -0.043 7.043 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.021 0.979 34 H 0.044 0.956 35 H 0.261 0.739 36 H 0.428 0.572 37 H 0.128 0.872 38 H 0.182 0.818 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.548 -10.905 -6.103 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C 0.016 3.984 4 N -0.290 5.290 5 C 0.130 3.870 6 C -0.551 4.551 7 H 0.066 0.934 8 C -0.172 4.172 9 N -0.558 5.558 10 Si 0.765 3.235 11 H -0.192 1.192 12 H -0.218 1.218 13 H -0.200 1.200 14 C 0.288 3.712 15 O -0.435 6.435 16 C 0.273 3.727 17 O -0.332 6.332 18 N -0.294 5.294 19 C 0.051 3.949 20 C -0.106 4.106 21 C -0.018 4.018 22 C -0.039 4.039 23 N -0.133 5.133 24 C -0.071 4.071 25 C -0.092 4.092 26 C -0.064 4.064 27 Cl -0.014 7.014 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.268 0.732 37 H 0.146 0.854 38 H 0.199 0.801 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 13.119 -9.636 -4.613 16.919 hybrid contribution -0.242 0.813 -0.428 0.950 sum 12.878 -8.823 -5.041 16.404 Atomic orbital electron populations 1.24062 0.95111 1.03172 0.97735 1.23145 0.96729 0.97881 1.02408 1.20774 0.91959 0.96700 0.88952 1.48216 1.07938 1.59815 1.12984 1.19429 0.94640 0.94862 0.78032 1.21351 1.37550 0.95279 1.00914 0.93436 1.25393 0.95157 1.01053 0.95572 1.70003 1.41594 1.37476 1.06742 0.85861 0.78817 0.81959 0.76876 1.19179 1.21801 1.20013 1.19817 0.83866 0.79866 0.87608 1.90658 1.78845 1.46566 1.27425 1.20432 0.83465 0.79585 0.89190 1.91001 1.77156 1.38166 1.26904 1.43062 1.07563 1.65761 1.13017 1.17256 0.91996 0.95013 0.90643 1.21217 0.98463 0.97469 0.93426 1.15943 0.99481 0.94745 0.91581 1.25842 0.92534 0.92791 0.92723 1.81253 1.08998 1.11066 1.11940 1.21482 0.95230 0.90863 0.99549 1.21239 0.98466 0.99362 0.90161 1.21168 0.98800 0.91622 0.94810 1.98406 1.97123 1.52245 1.53607 0.87796 0.86325 0.87670 0.89375 0.88980 0.96078 0.93857 0.92968 0.73161 0.85447 0.80113 0.79193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 14.32 67.78 0.97 -3.13 16 2 C -0.18 -5.44 9.84 25.65 0.25 -5.19 16 3 C 0.14 4.69 5.83 85.63 0.50 5.19 16 4 N -0.56 -23.06 2.46 -832.19 -2.05 -25.10 16 5 C 0.25 12.32 4.78 85.63 0.41 12.73 16 6 C -0.51 -27.44 7.79 25.60 0.20 -27.24 16 7 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 8 C 0.03 1.55 5.46 84.66 0.46 2.01 16 9 N -0.92 -53.70 13.29 21.45 0.28 -53.41 16 10 Si 0.94 44.96 29.54 68.60 2.03 46.99 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 C 0.51 20.04 7.67 87.24 0.67 20.71 16 15 O -0.55 -21.28 16.04 -3.28 -0.05 -21.34 16 16 C 0.49 18.92 7.57 87.24 0.66 19.58 16 17 O -0.46 -21.11 9.46 -3.33 -0.03 -21.14 16 18 N -0.64 -19.25 5.04 -304.86 -1.54 -20.79 16 19 C 0.15 3.87 6.32 38.18 0.24 4.11 16 20 C -0.08 -2.46 8.41 22.67 0.19 -2.27 16 21 C -0.01 -0.32 5.73 -21.36 -0.12 -0.44 16 22 C 0.28 8.16 15.33 88.33 1.35 9.51 16 23 N -0.46 -15.98 18.54 19.01 0.35 -15.63 16 24 C -0.05 -0.70 9.75 22.56 0.22 -0.48 16 25 C -0.07 -0.90 9.80 22.23 0.22 -0.68 16 26 C -0.03 -0.64 6.34 22.52 0.14 -0.49 16 27 Cl -0.04 -0.74 27.91 -2.72 -0.08 -0.82 16 28 H 0.10 2.51 7.84 -2.91 -0.02 2.49 16 29 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 30 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.09 2.96 7.76 -2.39 -0.02 2.95 16 32 H 0.09 2.99 7.36 -2.38 -0.02 2.97 16 33 H 0.02 1.09 8.02 -2.39 -0.02 1.07 16 34 H 0.04 2.35 5.84 -2.39 -0.01 2.34 16 35 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 36 H 0.43 11.22 7.50 -92.70 -0.70 10.53 16 37 H 0.13 4.89 6.11 -2.91 -0.02 4.87 16 38 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -69.04 367.33 5.72 -63.33 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.43 Total: 13.99 kcal Atomic # 6 Polarization: 27.55 SS G_CDS: 6.37 Total: 33.92 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -2.95 Total: -114.93 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.08 Total: -42.47 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -69.04 5.72 -63.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340625295.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.793 kcal (2) G-P(sol) polarization free energy of solvation -69.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds