Wall clock time and date at job start Wed Apr 1 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99638 * 2 1 4 4 N 1.46501 * 109.47023 * 125.00338 * 3 2 1 5 5 C 1.46496 * 119.99991 * 274.88850 * 4 3 2 6 6 C 1.50707 * 109.46712 * 262.65990 * 5 4 3 7 7 H 1.07995 * 120.00426 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99563 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99656 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00301 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.46962 * 90.00163 * 10 8 6 12 12 H 1.48502 * 109.47023 * 210.00162 * 10 8 6 13 13 H 1.48500 * 109.46730 * 329.99982 * 10 8 6 14 14 C 1.34774 * 119.99898 * 94.88461 * 4 3 2 15 15 O 1.21361 * 119.99959 * 3.76234 * 14 4 3 16 16 C 1.49352 * 120.00151 * 183.75651 * 14 4 3 17 17 O 1.21378 * 119.99807 * 354.62596 * 16 14 4 18 18 N 1.34770 * 120.00417 * 174.89280 * 16 14 4 19 19 C 1.39396 * 120.00247 * 184.84692 * 18 16 14 20 20 C 1.39138 * 119.93051 * 33.34370 * 19 18 16 21 21 C 1.37676 * 120.09289 * 179.76126 * 20 19 18 22 22 C 1.39794 * 119.94604 * 0.50867 * 21 20 19 23 23 C 1.43199 * 120.07021 * 179.72519 * 22 21 20 24 24 N 9.84674 * 143.08066 * 283.22498 * 4 1 2 25 25 C 1.39756 * 119.85857 * 359.74300 * 22 21 20 26 26 C 1.37803 * 119.91215 * 0.02562 * 25 22 21 27 27 Cl 1.73603 * 119.97651 * 179.97438 * 26 25 22 28 28 H 1.08000 * 119.99828 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.00112 * 359.97438 * 1 2 3 30 30 H 1.07994 * 119.99870 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47432 * 5.00169 * 3 2 1 32 32 H 1.09003 * 109.46891 * 245.00385 * 3 2 1 33 33 H 1.09004 * 109.47080 * 22.65658 * 5 4 3 34 34 H 1.09001 * 109.47504 * 142.65973 * 5 4 3 35 35 H 0.97006 * 119.99690 * 179.97438 * 9 8 6 36 36 H 0.97006 * 119.99647 * 4.85695 * 18 16 14 37 37 H 1.08004 * 119.95119 * 359.97438 * 20 19 18 38 38 H 1.08008 * 120.03052 * 180.25627 * 21 20 19 39 39 H 1.08004 * 120.04171 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5291 1.7644 2.4517 6 6 2.8803 3.2155 2.6573 7 1 3.3982 3.7608 1.8823 8 6 2.5413 3.8465 3.8354 9 7 2.8473 5.1129 4.0147 10 14 1.6462 2.9030 5.1764 11 1 2.6378 2.2765 6.0870 12 1 0.7858 3.8357 5.9478 13 1 0.8033 1.8470 4.5602 14 6 4.2771 0.9587 0.9576 15 8 4.6792 0.6659 -0.1494 16 6 5.2043 0.9055 2.1272 17 8 4.8307 1.2910 3.2158 18 7 6.4576 0.4346 1.9727 19 6 7.2895 0.2901 3.0819 20 6 6.7474 -0.0543 4.3161 21 6 7.5666 -0.2026 5.4127 22 6 8.9436 0.0035 5.2880 23 6 9.7974 -0.1444 6.4282 24 7 10.4746 -0.2616 7.3327 25 6 9.4852 0.3544 4.0484 26 6 8.6605 0.4967 2.9536 27 17 9.3314 0.9333 1.4132 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.4481 1.6397 2.5153 34 1 3.0103 1.1615 3.2218 35 1 2.6085 5.5570 4.8434 36 1 6.7808 0.1963 1.0897 37 1 5.6829 -0.2088 4.4134 38 1 7.1452 -0.4740 6.3694 39 1 10.5488 0.5140 3.9487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340630577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:43 Heat of formation + Delta-G solvation = 11.752019 kcal Electronic energy + Delta-G solvation = -27294.853905 eV Core-core repulsion = 23229.726612 eV Total energy + Delta-G solvation = -4065.127293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.29252 -40.81035 -39.46520 -37.99491 -37.60315 -37.26589 -35.91044 -34.96561 -33.89795 -32.11674 -31.38887 -30.04629 -28.14589 -26.01230 -24.65389 -24.20991 -23.34758 -21.39449 -20.58155 -20.21890 -19.23284 -19.00938 -18.58054 -17.57596 -17.26690 -16.83899 -16.54548 -16.17867 -15.94700 -15.86896 -15.49632 -15.22908 -14.93940 -14.86833 -14.76160 -14.39844 -14.23340 -14.05283 -14.01928 -13.86840 -13.46916 -13.15895 -12.86493 -12.76168 -12.64376 -12.50074 -12.29503 -12.16099 -12.12685 -11.91282 -11.65934 -11.57082 -10.76813 -10.56169 -10.20573 -10.01992 -9.66219 -9.37275 -8.22740 -6.25830 -0.60019 0.03057 0.40154 0.87137 1.06631 1.42230 1.45305 1.51089 1.52026 1.58829 1.71214 2.17092 2.40954 2.51260 2.67893 2.75565 3.14987 3.24207 3.55317 3.87893 3.97705 4.04424 4.13628 4.16051 4.48157 4.50116 4.68980 4.73357 4.79585 4.85320 4.95798 5.04205 5.05702 5.20572 5.35745 5.50866 5.54192 5.69657 5.83477 5.89441 6.10279 6.35951 6.37315 6.62635 6.72508 6.93346 7.36978 8.94031 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009835 B = 0.003863 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.193594 B = 7246.795896 C = 8875.665370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.182 4.182 3 C 0.134 3.866 4 N -0.556 5.556 5 C 0.206 3.794 6 C -0.516 4.516 7 H 0.025 0.975 8 C 0.023 3.977 9 N -0.948 5.948 10 Si 0.937 3.063 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.237 1.237 14 C 0.508 3.492 15 O -0.553 6.553 16 C 0.503 3.497 17 O -0.467 6.467 18 N -0.644 5.644 19 C 0.185 3.815 20 C -0.125 4.125 21 C -0.028 4.028 22 C -0.038 4.038 23 C 0.286 3.714 24 N -0.454 5.454 25 C -0.026 4.026 26 C -0.073 4.073 27 Cl -0.047 7.047 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.264 0.736 36 H 0.429 0.571 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -15.108 -3.633 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.201 4.201 3 C 0.012 3.988 4 N -0.285 5.285 5 C 0.085 3.915 6 C -0.554 4.554 7 H 0.043 0.957 8 C -0.175 4.175 9 N -0.589 5.589 10 Si 0.760 3.240 11 H -0.192 1.192 12 H -0.215 1.215 13 H -0.160 1.160 14 C 0.290 3.710 15 O -0.433 6.433 16 C 0.285 3.715 17 O -0.337 6.337 18 N -0.292 5.292 19 C 0.088 3.912 20 C -0.145 4.145 21 C -0.049 4.049 22 C -0.042 4.042 23 C -0.028 4.028 24 N -0.129 5.129 25 C -0.048 4.048 26 C -0.103 4.103 27 Cl -0.018 7.018 28 H 0.139 0.861 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.269 0.731 37 H 0.165 0.835 38 H 0.183 0.817 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.682 -14.956 -2.099 16.515 hybrid contribution -0.311 0.518 -0.387 0.718 sum 6.371 -14.438 -2.486 15.976 Atomic orbital electron populations 1.24100 0.95065 1.03312 0.97392 1.23124 0.96707 0.97571 1.02704 1.20805 0.91892 0.97043 0.89024 1.47930 1.08117 1.59737 1.12725 1.20157 0.96144 0.94685 0.80517 1.21264 1.37510 0.94966 1.01692 0.95679 1.25611 0.96252 0.95312 1.00319 1.70055 1.49186 1.12474 1.27138 0.85878 0.79232 0.79304 0.79565 1.19216 1.21482 1.15981 1.19798 0.83615 0.79250 0.88348 1.90677 1.76179 1.51126 1.25365 1.20333 0.83106 0.78331 0.89724 1.90864 1.74159 1.41333 1.27366 1.43129 1.11944 1.63037 1.11114 1.17873 0.88388 0.96361 0.88580 1.21140 1.01897 1.00796 0.90698 1.21330 0.90460 0.93468 0.99651 1.15734 0.91180 1.09174 0.88131 1.25416 0.92519 0.92484 0.92425 1.81301 1.10000 1.10409 1.11223 1.21002 1.01204 0.94304 0.88253 1.20486 0.91369 1.08818 0.89612 1.98402 1.84751 1.91448 1.27220 0.86055 0.87813 0.87146 0.89433 0.89252 0.93859 0.91209 0.92661 0.73096 0.83508 0.81676 0.81116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 14.32 67.78 0.97 -2.41 16 2 C -0.18 -4.66 9.84 25.64 0.25 -4.41 16 3 C 0.13 4.24 5.89 85.63 0.50 4.75 16 4 N -0.56 -21.16 2.46 -832.18 -2.05 -23.21 16 5 C 0.21 8.85 3.86 85.64 0.33 9.18 16 6 C -0.52 -27.74 8.83 25.60 0.23 -27.52 16 7 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 8 C 0.02 1.27 5.47 84.65 0.46 1.73 16 9 N -0.95 -57.56 13.96 21.45 0.30 -57.26 16 10 Si 0.94 41.44 27.47 68.60 1.88 43.32 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.24 -9.26 6.54 99.48 0.65 -8.60 16 14 C 0.51 18.93 7.66 87.24 0.67 19.60 16 15 O -0.55 -20.60 15.97 -3.28 -0.05 -20.65 16 16 C 0.50 17.72 7.49 87.24 0.65 18.37 16 17 O -0.47 -18.85 10.01 -3.33 -0.03 -18.89 16 18 N -0.64 -17.88 5.04 -304.70 -1.53 -19.41 16 19 C 0.19 4.54 6.28 38.40 0.24 4.78 16 20 C -0.12 -2.89 8.63 22.35 0.19 -2.70 16 21 C -0.03 -0.51 9.74 22.51 0.22 -0.29 16 22 C -0.04 -0.66 5.74 -21.29 -0.12 -0.78 16 23 C 0.29 5.75 15.33 88.33 1.35 7.11 16 24 N -0.45 -11.29 18.54 19.00 0.35 -10.93 16 25 C -0.03 -0.44 9.52 22.53 0.21 -0.22 16 26 C -0.07 -1.51 6.33 22.41 0.14 -1.37 16 27 Cl -0.05 -0.95 27.91 -2.72 -0.08 -1.02 16 28 H 0.12 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.10 2.11 7.84 -2.91 -0.02 2.08 16 30 H 0.11 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.09 2.78 7.76 -2.39 -0.02 2.76 16 32 H 0.09 2.83 7.24 -2.39 -0.02 2.82 16 33 H 0.04 1.77 7.08 -2.38 -0.02 1.75 16 34 H 0.07 2.99 4.86 -2.39 -0.01 2.98 16 35 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 36 H 0.43 10.69 7.49 -92.70 -0.69 10.00 16 37 H 0.15 3.75 6.39 -2.91 -0.02 3.73 16 38 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -68.40 364.30 5.48 -62.93 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.38 Total: 19.32 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 6.31 Total: 25.82 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -2.93 Total: -110.82 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.09 Total: -39.54 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.32 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.02 kcal Total: -68.40 5.48 -62.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340630577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.677 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds