Wall clock time and date at job start Wed Apr 1 2020 04:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48507 * 109.47088 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47009 * 300.00037 * 3 2 1 6 6 H 1.48500 * 109.47086 * 60.00375 * 3 2 1 7 7 C 1.38819 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99877 * 154.65801 * 7 2 1 9 9 N 1.36938 * 119.99832 * 334.65115 * 7 2 1 10 10 C 1.46496 * 119.99652 * 129.75005 * 9 7 2 11 11 C 1.53001 * 117.49908 * 3.82146 * 10 9 7 12 12 C 1.52994 * 60.00188 * 252.51053 * 11 10 9 13 13 S 1.65598 * 120.00132 * 309.75066 * 9 7 2 14 14 O 1.42098 * 106.40206 * 156.45934 * 13 9 7 15 15 O 1.42100 * 106.40283 * 23.54034 * 13 9 7 16 16 C 1.76198 * 107.21677 * 270.00076 * 13 9 7 17 17 C 1.38259 * 119.94567 * 90.00328 * 16 13 9 18 18 C 1.38149 * 120.05883 * 180.02562 * 17 16 13 19 19 C 1.38736 * 119.94007 * 359.97438 * 18 17 16 20 20 O 1.35903 * 120.05116 * 180.02562 * 19 18 17 21 21 C 1.42902 * 116.99679 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.47176 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.47358 * 300.00127 * 22 21 20 24 24 F 1.39902 * 109.47208 * 60.00268 * 22 21 20 25 25 C 1.38726 * 119.88876 * 0.28190 * 19 18 17 26 26 C 1.38149 * 119.94402 * 359.46337 * 25 19 18 27 27 H 0.96993 * 120.00035 * 355.09033 * 1 2 3 28 28 H 1.09002 * 115.55264 * 149.52865 * 10 9 7 29 29 H 1.09002 * 117.50262 * 0.02562 * 11 10 9 30 30 H 1.09008 * 117.49844 * 145.02081 * 11 10 9 31 31 H 1.09008 * 117.49977 * 252.51689 * 12 11 10 32 32 H 1.09000 * 117.52158 * 107.48068 * 12 11 10 33 33 H 1.07997 * 119.97284 * 0.02562 * 17 16 13 34 34 H 1.07996 * 120.03190 * 179.97438 * 18 17 16 35 35 H 1.08999 * 109.47233 * 300.00783 * 21 20 19 36 36 H 1.09003 * 109.47078 * 60.00621 * 21 20 19 37 37 H 1.08999 * 109.47314 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.02693 * 179.72186 * 25 19 18 39 39 H 1.08003 * 119.96911 * 180.23167 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0123 -1.2470 -0.4009 9 7 1.4244 -2.3312 0.5067 10 6 1.4182 -3.5686 -0.2775 11 6 2.1595 -3.5606 -1.6159 12 6 0.6298 -3.5700 -1.5888 13 16 0.7231 -2.2978 2.0064 14 8 -0.2328 -3.3491 2.0259 15 8 0.3908 -0.9404 2.2639 16 6 1.9678 -2.7354 3.1742 17 6 2.7542 -1.7523 3.7457 18 6 3.7313 -2.0928 4.6611 19 6 3.9226 -3.4226 5.0072 20 8 4.8827 -3.7600 5.9079 21 6 5.0238 -5.1482 6.2162 22 6 6.1449 -5.3317 7.2410 23 9 7.3454 -4.8474 6.7107 24 9 5.8313 -4.6247 8.4068 25 6 3.1358 -4.4076 4.4284 26 6 2.1566 -4.0614 3.5174 27 1 -0.4850 0.8369 0.0719 28 1 1.4338 -4.4921 0.3013 29 1 2.6523 -2.6347 -1.9128 30 1 2.6632 -4.4789 -1.9178 31 1 0.1271 -4.4946 -1.8727 32 1 0.1154 -2.6504 -1.8678 33 1 2.6046 -0.7172 3.4762 34 1 4.3456 -1.3245 5.1069 35 1 4.0886 -5.5255 6.6297 36 1 5.2678 -5.6992 5.3078 37 1 6.2528 -6.3906 7.4758 38 1 3.2858 -5.4440 4.6928 39 1 1.5413 -4.8276 3.0694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342432613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:54 Heat of formation + Delta-G solvation = -145.028772 kcal Electronic energy + Delta-G solvation = -28639.216794 eV Core-core repulsion = 24118.645496 eV Total energy + Delta-G solvation = -4520.571298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.26615 -47.29727 -40.09661 -37.32695 -37.09979 -35.70362 -34.17525 -33.24212 -31.44686 -30.68463 -30.57068 -29.24558 -24.94605 -24.16821 -22.60145 -21.85024 -21.52203 -20.57359 -18.83464 -18.78619 -17.84007 -17.68270 -17.10475 -17.01751 -16.01917 -15.98669 -15.77836 -15.40949 -15.11079 -14.40073 -14.17805 -14.13779 -13.90100 -13.64776 -13.61862 -13.33330 -13.09428 -12.79261 -12.73857 -12.48161 -12.27724 -11.84874 -11.44498 -11.42140 -11.27176 -11.00911 -10.80693 -10.70759 -10.57513 -10.46788 -10.36556 -10.23837 -9.93114 -9.72128 -9.39740 -8.80985 -8.71025 -8.31299 -7.51488 -6.52358 -4.20312 1.29775 1.56883 1.93527 2.65542 3.21319 3.29265 3.32912 3.38706 3.72466 3.78150 4.04090 4.15386 4.46111 4.58323 4.67430 4.78120 4.90915 4.92874 4.93282 4.96907 5.31538 5.48146 5.64955 5.71498 5.75249 5.84298 5.97247 6.04832 6.17423 6.21485 6.37152 6.38830 6.44189 6.73966 6.86022 6.87562 7.13116 7.31694 7.40241 7.54472 8.21971 8.88780 9.31362 10.52057 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.003265 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.901522 B = 8574.657921 C = 9161.719260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.066 3.934 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.288 4.288 8 H 0.084 0.916 9 N -0.791 5.791 10 C 0.098 3.902 11 C -0.182 4.182 12 C -0.188 4.188 13 S 2.579 3.421 14 O -1.009 7.009 15 O -0.946 6.946 16 C -0.691 4.691 17 C 0.019 3.981 18 C -0.171 4.171 19 C 0.151 3.849 20 O -0.305 6.305 21 C 0.003 3.997 22 C 0.274 3.726 23 F -0.198 7.198 24 F -0.198 7.198 25 C -0.234 4.234 26 C 0.004 3.996 27 H 0.279 0.721 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.537 -10.404 7.539 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.153 4.153 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.101 0.899 9 N -0.613 5.613 10 C -0.011 4.011 11 C -0.221 4.221 12 C -0.228 4.228 13 S 2.677 3.323 14 O -0.998 6.998 15 O -0.934 6.934 16 C -0.768 4.768 17 C 0.000 4.000 18 C -0.191 4.191 19 C 0.106 3.894 20 O -0.219 6.219 21 C -0.073 4.073 22 C 0.220 3.780 23 F -0.179 7.179 24 F -0.179 7.179 25 C -0.254 4.254 26 C -0.015 4.015 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.626 -10.106 8.101 15.562 hybrid contribution 0.973 0.355 0.489 1.146 sum 9.600 -9.751 8.590 16.156 Atomic orbital electron populations 1.69911 1.07083 1.29874 1.34557 1.25661 0.94846 1.00649 0.94126 0.86161 0.80209 0.81872 0.78269 1.18788 1.20590 1.19733 1.19005 0.98470 0.85778 1.40047 0.89878 1.52341 1.73293 1.12569 1.23113 1.21191 1.04433 0.88342 0.87087 1.23140 0.94988 1.02460 1.01473 1.23205 0.93753 1.02587 1.03229 1.09506 0.76551 0.73314 0.72945 1.93323 1.60594 1.58792 1.87103 1.93429 1.81781 1.33766 1.84444 1.32518 1.23722 0.99755 1.20839 1.20806 0.89595 0.99624 0.90007 1.20558 1.02424 0.93285 1.02793 1.19081 0.87547 0.94287 0.88491 1.86114 1.53119 1.24317 1.58320 1.24008 0.99566 0.84040 0.99714 1.22035 0.80748 0.94977 0.80203 1.93031 1.47833 1.90498 1.86530 1.93029 1.92869 1.81857 1.50189 1.21215 1.01457 0.98301 1.04396 1.20687 0.93255 0.95149 0.92395 0.91029 0.87776 0.87622 0.90253 0.90118 0.87874 0.83735 0.84983 0.88804 0.88722 0.85175 0.85629 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.94 11.76 55.49 0.65 -20.29 16 2 C 0.07 1.64 3.98 -17.43 -0.07 1.57 16 3 Si 0.91 19.50 29.63 -169.99 -5.04 14.46 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.29 -6.93 7.92 -15.06 -0.12 -7.05 16 8 H 0.08 1.90 7.31 -52.49 -0.38 1.52 16 9 N -0.79 -18.52 3.03 -53.42 -0.16 -18.68 16 10 C 0.10 2.01 6.02 -67.93 -0.41 1.60 16 11 C -0.18 -3.21 9.82 -26.73 -0.26 -3.47 16 12 C -0.19 -3.61 10.35 -26.73 -0.28 -3.89 16 13 S 2.58 62.59 5.45 -107.50 -0.59 62.01 16 14 O -1.01 -26.01 16.50 -57.17 -0.94 -26.95 16 15 O -0.95 -25.60 13.49 -57.17 -0.77 -26.37 16 16 C -0.69 -14.23 5.97 -39.56 -0.24 -14.46 16 17 C 0.02 0.36 9.52 -39.61 -0.38 -0.02 16 18 C -0.17 -2.91 9.99 -39.43 -0.39 -3.30 16 19 C 0.15 2.37 6.69 -39.22 -0.26 2.11 16 20 O -0.31 -4.23 10.02 -19.44 -0.19 -4.42 16 21 C 0.00 0.03 4.96 37.16 0.18 0.21 16 22 C 0.27 2.12 5.63 37.16 0.21 2.33 16 23 F -0.20 -2.11 17.28 2.25 0.04 -2.07 16 24 F -0.20 -2.11 17.28 2.25 0.04 -2.07 16 25 C -0.23 -3.52 9.04 -39.43 -0.36 -3.87 16 26 C 0.00 0.07 9.51 -39.60 -0.38 -0.30 16 27 H 0.28 7.14 8.32 -40.82 -0.34 6.80 16 28 H 0.10 1.92 8.09 -51.93 -0.42 1.50 16 29 H 0.11 1.97 6.70 -51.93 -0.35 1.62 16 30 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 31 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.10 2.25 8.14 -51.93 -0.42 1.82 16 33 H 0.14 2.78 7.61 -52.49 -0.40 2.38 16 34 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.09 0.66 7.67 -51.93 -0.40 0.26 16 36 H 0.09 0.66 7.65 -51.93 -0.40 0.27 16 37 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.13 1.38 6.30 -52.48 -0.33 1.05 16 39 H 0.13 2.22 7.61 -52.48 -0.40 1.82 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -32.76 353.07 -8.72 -41.47 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.33 Total: 6.14 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -2.75 Total: -28.54 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.49 Total: -38.97 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -1.91 Total: -57.74 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.08 Total: -4.14 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.04 Total: 14.46 kcal Atomic # 16 Polarization: 62.59 SS G_CDS: -0.59 Total: 62.01 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.76 -8.72 -41.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342432613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.558 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds