Wall clock time and date at job start Wed Apr 1 2020 04:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48507 * 109.47088 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47009 * 300.00037 * 3 2 1 6 6 H 1.48500 * 109.47086 * 60.00375 * 3 2 1 7 7 C 1.38819 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99877 * 154.65801 * 7 2 1 9 9 N 1.36938 * 119.99832 * 334.65115 * 7 2 1 10 10 C 1.46496 * 119.99652 * 129.75005 * 9 7 2 11 11 C 1.53001 * 117.49908 * 3.82146 * 10 9 7 12 12 C 1.52994 * 60.00188 * 252.51053 * 11 10 9 13 13 S 1.65598 * 120.00132 * 309.75066 * 9 7 2 14 14 O 1.42098 * 106.40206 * 156.45934 * 13 9 7 15 15 O 1.42100 * 106.40283 * 23.54034 * 13 9 7 16 16 C 1.76198 * 107.21677 * 270.00076 * 13 9 7 17 17 C 1.38259 * 119.94567 * 90.00328 * 16 13 9 18 18 C 1.38149 * 120.05883 * 180.02562 * 17 16 13 19 19 C 1.38736 * 119.94007 * 359.97438 * 18 17 16 20 20 O 1.35903 * 120.05116 * 180.02562 * 19 18 17 21 21 C 1.42902 * 116.99679 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.47176 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.47358 * 300.00127 * 22 21 20 24 24 F 1.39902 * 109.47208 * 60.00268 * 22 21 20 25 25 C 1.38726 * 119.88876 * 0.28190 * 19 18 17 26 26 C 1.38149 * 119.94402 * 359.46337 * 25 19 18 27 27 H 0.96993 * 120.00035 * 355.09033 * 1 2 3 28 28 H 1.09002 * 115.55264 * 149.52865 * 10 9 7 29 29 H 1.09002 * 117.50262 * 0.02562 * 11 10 9 30 30 H 1.09008 * 117.49844 * 145.02081 * 11 10 9 31 31 H 1.09008 * 117.49977 * 252.51689 * 12 11 10 32 32 H 1.09000 * 117.52158 * 107.48068 * 12 11 10 33 33 H 1.07997 * 119.97284 * 0.02562 * 17 16 13 34 34 H 1.07996 * 120.03190 * 179.97438 * 18 17 16 35 35 H 1.08999 * 109.47233 * 300.00783 * 21 20 19 36 36 H 1.09003 * 109.47078 * 60.00621 * 21 20 19 37 37 H 1.08999 * 109.47314 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.02693 * 179.72186 * 25 19 18 39 39 H 1.08003 * 119.96911 * 180.23167 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0123 -1.2470 -0.4009 9 7 1.4244 -2.3312 0.5067 10 6 1.4182 -3.5686 -0.2775 11 6 2.1595 -3.5606 -1.6159 12 6 0.6298 -3.5700 -1.5888 13 16 0.7231 -2.2978 2.0064 14 8 -0.2328 -3.3491 2.0259 15 8 0.3908 -0.9404 2.2639 16 6 1.9678 -2.7354 3.1742 17 6 2.7542 -1.7523 3.7457 18 6 3.7313 -2.0928 4.6611 19 6 3.9226 -3.4226 5.0072 20 8 4.8827 -3.7600 5.9079 21 6 5.0238 -5.1482 6.2162 22 6 6.1449 -5.3317 7.2410 23 9 7.3454 -4.8474 6.7107 24 9 5.8313 -4.6247 8.4068 25 6 3.1358 -4.4076 4.4284 26 6 2.1566 -4.0614 3.5174 27 1 -0.4850 0.8369 0.0719 28 1 1.4338 -4.4921 0.3013 29 1 2.6523 -2.6347 -1.9128 30 1 2.6632 -4.4789 -1.9178 31 1 0.1271 -4.4946 -1.8727 32 1 0.1154 -2.6504 -1.8678 33 1 2.6046 -0.7172 3.4762 34 1 4.3456 -1.3245 5.1069 35 1 4.0886 -5.5255 6.6297 36 1 5.2678 -5.6992 5.3078 37 1 6.2528 -6.3906 7.4758 38 1 3.2858 -5.4440 4.6928 39 1 1.5413 -4.8276 3.0694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342432613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:53 Heat of formation + Delta-G solvation = -166.495294 kcal Electronic energy + Delta-G solvation = -28640.147652 eV Core-core repulsion = 24118.645496 eV Total energy + Delta-G solvation = -4521.502157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.93077 -47.98814 -41.24948 -38.70802 -38.54875 -37.68003 -36.16636 -35.01461 -32.51402 -32.42904 -31.78863 -30.36348 -26.77567 -25.04507 -23.94689 -23.02459 -22.93202 -22.20390 -20.64558 -19.79993 -19.16883 -18.51477 -18.15440 -17.93969 -17.68223 -17.60366 -17.00424 -16.66953 -16.50263 -15.98640 -15.62976 -15.48267 -15.12594 -14.86819 -14.61193 -14.52147 -14.35732 -14.11260 -14.07965 -13.82021 -13.57479 -13.36537 -13.16420 -12.76727 -12.53930 -12.50527 -12.32716 -12.29740 -12.14981 -12.10280 -11.94502 -11.91389 -11.59997 -11.40214 -10.94681 -10.56265 -10.14209 -9.61546 -9.27587 -8.37859 -6.09706 -0.13478 0.15422 0.23884 1.47853 1.53417 1.62704 1.77428 2.33355 2.44523 2.77945 2.88221 3.03477 3.25434 3.27061 3.46797 3.52887 3.63705 3.74391 3.93248 4.00703 4.14538 4.23834 4.28330 4.35544 4.35849 4.43758 4.46895 4.56925 4.76618 4.86672 4.93647 5.01021 5.07575 5.27708 5.32121 5.51945 5.56479 5.63012 5.89882 6.15039 6.34143 7.06971 7.48535 8.66614 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.003265 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.901522 B = 8574.657921 C = 9161.719260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.024 3.976 3 Si 0.959 3.041 4 H -0.244 1.244 5 H -0.272 1.272 6 H -0.287 1.287 7 C -0.297 4.297 8 H 0.093 0.907 9 N -0.806 5.806 10 C 0.066 3.934 11 C -0.152 4.152 12 C -0.196 4.196 13 S 2.596 3.404 14 O -1.032 7.032 15 O -0.985 6.985 16 C -0.715 4.715 17 C 0.002 3.998 18 C -0.179 4.179 19 C 0.165 3.835 20 O -0.319 6.319 21 C -0.014 4.014 22 C 0.268 3.732 23 F -0.218 7.218 24 F -0.218 7.218 25 C -0.219 4.219 26 C -0.003 4.003 27 H 0.273 0.727 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.190 0.810 38 H 0.175 0.825 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.176 -13.452 8.658 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.167 1.167 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.440 4.440 8 H 0.110 0.890 9 N -0.630 5.630 10 C -0.042 4.042 11 C -0.191 4.191 12 C -0.236 4.236 13 S 2.698 3.302 14 O -1.022 7.022 15 O -0.974 6.974 16 C -0.798 4.798 17 C -0.017 4.017 18 C -0.199 4.199 19 C 0.119 3.881 20 O -0.232 6.232 21 C -0.090 4.090 22 C 0.215 3.785 23 F -0.199 7.199 24 F -0.200 7.200 25 C -0.238 4.238 26 C -0.023 4.023 27 H 0.083 0.917 28 H 0.141 0.859 29 H 0.111 0.889 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.206 0.794 38 H 0.193 0.807 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.264 -13.137 9.139 19.570 hybrid contribution 0.279 1.070 0.364 1.164 sum 11.543 -12.067 9.503 19.214 Atomic orbital electron populations 1.70007 1.08598 1.29984 1.37961 1.26458 0.95247 1.03544 0.93663 0.85412 0.80220 0.78497 0.77678 1.16679 1.19785 1.21279 1.19204 0.98570 0.86034 1.40197 0.88961 1.52240 1.73614 1.13606 1.23496 1.21613 1.06687 0.87934 0.87938 1.23170 0.93731 1.03751 0.98426 1.23191 0.95194 1.02258 1.02960 1.07872 0.76534 0.72180 0.73599 1.93281 1.62001 1.59131 1.87810 1.93383 1.83014 1.35752 1.85292 1.31781 1.24090 1.01767 1.22159 1.20736 0.90749 0.98881 0.91318 1.20699 1.01914 0.94997 1.02259 1.19129 0.87262 0.93843 0.87839 1.86119 1.51981 1.27933 1.57212 1.24593 1.01407 0.81501 1.01469 1.22744 0.79410 0.97319 0.79028 1.92993 1.49120 1.91011 1.86807 1.92991 1.92958 1.82680 1.51369 1.21603 0.99333 1.00600 1.02288 1.20900 0.94273 0.93936 0.93149 0.91696 0.85885 0.88925 0.86106 0.87292 0.91444 0.85145 0.83414 0.86274 0.86098 0.79356 0.80734 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.13 11.76 21.65 0.25 -46.88 16 2 C 0.02 1.26 3.98 84.86 0.34 1.60 16 3 Si 0.96 41.17 29.63 68.60 2.03 43.20 16 4 H -0.24 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.30 -14.68 7.92 84.04 0.67 -14.01 16 8 H 0.09 4.27 7.31 -2.91 -0.02 4.25 16 9 N -0.81 -38.60 3.03 -322.94 -0.98 -39.58 16 10 C 0.07 2.67 6.02 44.99 0.27 2.94 16 11 C -0.15 -5.12 9.82 30.59 0.30 -4.82 16 12 C -0.20 -7.51 10.35 30.59 0.32 -7.20 16 13 S 2.60 129.96 5.45 -56.49 -0.31 129.66 16 14 O -1.03 -54.46 16.50 -128.00 -2.11 -56.57 16 15 O -0.99 -56.21 13.49 -128.00 -1.73 -57.94 16 16 C -0.71 -29.40 5.97 22.28 0.13 -29.27 16 17 C 0.00 0.09 9.52 22.25 0.21 0.31 16 18 C -0.18 -5.85 9.99 22.37 0.22 -5.62 16 19 C 0.17 4.66 6.69 22.51 0.15 4.81 16 20 O -0.32 -7.64 10.02 -92.46 -0.93 -8.56 16 21 C -0.01 -0.18 4.96 71.98 0.36 0.18 16 22 C 0.27 2.99 5.63 71.98 0.41 3.40 16 23 F -0.22 -3.98 17.28 44.97 0.78 -3.20 16 24 F -0.22 -4.01 17.28 44.97 0.78 -3.23 16 25 C -0.22 -5.67 9.04 22.37 0.20 -5.47 16 26 C 0.00 -0.11 9.51 22.25 0.21 0.10 16 27 H 0.27 14.97 8.32 -92.71 -0.77 14.19 16 28 H 0.12 4.38 8.09 -2.39 -0.02 4.36 16 29 H 0.09 3.38 6.70 -2.39 -0.02 3.36 16 30 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 31 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 32 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.13 5.30 7.61 -2.91 -0.02 5.27 16 34 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 35 H 0.12 0.95 7.67 -2.39 -0.02 0.93 16 36 H 0.12 0.94 7.65 -2.39 -0.02 0.92 16 37 H 0.19 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.18 2.71 6.30 -2.91 -0.02 2.69 16 39 H 0.14 4.45 7.61 -2.91 -0.02 4.43 16 Total: -1.00 -76.25 353.07 2.67 -73.58 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 1.09 Total: 22.58 kcal Atomic # 6 Polarization: -56.84 SS G_CDS: 3.79 Total: -53.05 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -0.72 Total: -86.45 kcal Atomic # 8 Polarization: -118.30 SS G_CDS: -4.77 Total: -123.07 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 1.55 Total: -6.43 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 129.96 SS G_CDS: -0.31 Total: 129.66 kcal Total: -76.25 2.67 -73.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342432613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.918 kcal (2) G-P(sol) polarization free energy of solvation -76.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds