Wall clock time and date at job start Wed Apr 1 2020 04:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42107 * 110.54111 * 2 1 4 4 O 1.42102 * 110.54223 * 136.75010 * 2 1 3 5 5 C 1.76200 * 104.45035 * 248.37826 * 2 1 3 6 6 C 1.38235 * 119.99568 * 269.72723 * 5 2 1 7 7 C 1.38240 * 120.00001 * 179.76503 * 6 5 2 8 8 C 1.38237 * 119.99230 * 0.48367 * 7 6 5 9 9 C 1.50707 * 119.99649 * 179.76804 * 8 7 6 10 10 N 1.46500 * 109.47019 * 270.02423 * 9 8 7 11 11 S 1.65602 * 120.00072 * 165.00009 * 10 9 8 12 12 O 1.42091 * 104.28001 * 181.07054 * 11 10 9 13 13 O 1.42100 * 104.27579 * 308.92593 * 11 10 9 14 14 C 1.81399 * 104.44908 * 64.99425 * 11 10 9 15 15 C 1.52998 * 109.47208 * 180.02562 * 14 11 10 16 16 C 1.50695 * 109.47458 * 180.02562 * 15 14 11 17 17 H 1.08005 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00340 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00099 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00158 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47314 * 89.99443 * 20 18 16 22 22 H 1.48497 * 109.47216 * 209.99930 * 20 18 16 23 23 H 1.48506 * 109.46320 * 329.99745 * 20 18 16 24 24 C 1.38227 * 120.00617 * 359.79189 * 8 7 6 25 25 C 1.38231 * 120.00074 * 89.99637 * 5 2 1 26 26 H 1.09002 * 109.47124 * 171.62372 * 1 2 3 27 27 H 1.09001 * 109.46975 * 51.62493 * 1 2 3 28 28 H 1.09004 * 109.47147 * 291.62456 * 1 2 3 29 29 H 1.08000 * 120.00257 * 359.97438 * 6 5 2 30 30 H 1.07998 * 120.00425 * 180.25449 * 7 6 5 31 31 H 1.09008 * 109.47044 * 30.02344 * 9 8 7 32 32 H 1.08991 * 109.47296 * 150.02040 * 9 8 7 33 33 H 0.96997 * 119.99832 * 344.99879 * 10 9 8 34 34 H 1.08994 * 109.47479 * 300.00212 * 14 11 10 35 35 H 1.09002 * 109.47155 * 60.00348 * 14 11 10 36 36 H 1.09002 * 109.47372 * 300.00387 * 15 14 11 37 37 H 1.09001 * 109.47014 * 60.00611 * 15 14 11 38 38 H 0.96994 * 120.00049 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.00648 * 179.97438 * 24 8 7 40 40 H 1.07995 * 119.99970 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6287 -1.5862 6 6 2.4317 -1.9877 -1.7659 7 6 2.7719 -2.4816 -3.0114 8 6 2.9439 -1.6153 -4.0749 9 6 3.3199 -2.1531 -5.4316 10 7 4.7793 -2.2004 -5.5508 11 16 5.4828 -3.0807 -6.7642 12 8 6.8783 -2.9164 -6.5526 13 8 4.8729 -4.3605 -6.6677 14 6 4.9671 -2.2432 -8.2885 15 6 5.5601 -2.9716 -9.4962 16 6 5.1323 -2.2756 -10.7625 17 1 4.5009 -1.4008 -10.7110 18 6 5.5477 -2.7547 -11.9867 19 7 5.1738 -2.1475 -13.0919 20 14 6.6404 -4.2672 -12.0759 21 1 5.7945 -5.4844 -12.1652 22 1 7.5100 -4.1795 -13.2765 23 1 7.4853 -4.3398 -10.8568 24 6 2.7715 -0.2558 -3.8939 25 6 2.4261 0.2375 -2.6495 26 1 -0.3633 -1.0167 -0.1497 27 1 -0.3633 0.6380 -0.8057 28 1 -0.3634 0.3787 0.9554 29 1 2.3017 -2.6641 -0.9340 30 1 2.9069 -3.5437 -3.1528 31 1 2.9129 -3.1574 -5.5499 32 1 2.9130 -1.5027 -6.2058 33 1 5.3334 -1.7161 -4.9190 34 1 3.8794 -2.2518 -8.3576 35 1 5.3222 -1.2128 -8.2749 36 1 6.6480 -2.9634 -9.4274 37 1 5.2046 -4.0019 -9.5097 38 1 5.4658 -2.4848 -13.9531 39 1 2.9063 0.4211 -4.7246 40 1 2.2917 1.2997 -2.5080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348116734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:10 Heat of formation + Delta-G solvation = -117.923277 kcal Electronic energy + Delta-G solvation = -25097.762287 eV Core-core repulsion = 21132.206758 eV Total energy + Delta-G solvation = -3965.555529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.90466 -37.54494 -36.83290 -36.39155 -35.77516 -35.55057 -34.01002 -31.63138 -31.54074 -31.50368 -30.03320 -26.35573 -26.03723 -23.33722 -22.29397 -21.37074 -19.51707 -19.17842 -18.32466 -17.76451 -17.14671 -16.67704 -16.58361 -16.48777 -15.74496 -15.42727 -15.41021 -14.96233 -14.66711 -14.35982 -14.03348 -13.85484 -13.74847 -13.70006 -13.45348 -13.35704 -12.84757 -12.60949 -12.51729 -12.42150 -11.95414 -11.85202 -11.81816 -11.73732 -11.65041 -11.53242 -11.30788 -11.26259 -11.02597 -10.50464 -10.22235 -9.93236 -9.71842 -9.57258 -9.47491 -9.27200 -8.70575 -6.20914 -4.22597 -0.43530 0.23526 0.63260 0.86648 2.38445 2.77466 3.13648 3.23300 3.31035 3.34837 3.48689 3.63513 4.00556 4.16331 4.22798 4.23876 4.31897 4.42300 4.46433 4.52847 4.87225 4.87646 5.03304 5.09068 5.10818 5.17011 5.27936 5.39356 5.44525 5.52502 5.61206 5.62729 5.73634 6.03534 6.20822 6.37497 6.75489 6.83278 6.90494 7.49855 8.31470 8.79641 9.38574 10.91340 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.002019 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.472321 B =13862.996144 C =14291.642837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.501 3.499 3 O -0.937 6.937 4 O -0.938 6.938 5 C -0.659 4.659 6 C -0.026 4.026 7 C -0.121 4.121 8 C -0.039 4.039 9 C 0.146 3.854 10 N -1.123 6.123 11 S 2.590 3.410 12 O -0.963 6.963 13 O -0.965 6.965 14 C -0.582 4.582 15 C -0.008 4.008 16 C -0.520 4.520 17 H 0.078 0.922 18 C 0.071 3.929 19 N -0.895 5.895 20 Si 0.870 3.130 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C -0.124 4.124 25 C -0.026 4.026 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.416 0.584 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.139 0.861 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 4.588 25.671 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.680 3.320 3 O -0.935 6.935 4 O -0.935 6.935 5 C -0.746 4.746 6 C -0.045 4.045 7 C -0.141 4.141 8 C -0.041 4.041 9 C 0.020 3.980 10 N -0.880 5.880 11 S 2.688 3.312 12 O -0.953 6.953 13 O -0.955 6.955 14 C -0.715 4.715 15 C -0.047 4.047 16 C -0.559 4.559 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.533 5.533 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.186 1.186 24 C -0.143 4.143 25 C -0.045 4.045 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.249 0.751 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.157 0.843 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.311 3.946 26.131 28.746 hybrid contribution -0.086 -0.257 -1.028 1.063 sum -11.397 3.689 25.103 27.814 Atomic orbital electron populations 1.30223 1.25616 1.12185 1.11927 1.05147 0.77867 0.74638 0.74328 1.93597 1.77310 1.36501 1.86059 1.93595 1.77315 1.61645 1.60941 1.30550 1.18981 1.03099 1.22004 1.20967 0.92618 0.93171 0.97744 1.21339 0.99748 1.00741 0.92264 1.20243 0.94627 0.93864 0.95347 1.20343 0.80847 1.02793 0.93981 1.55824 1.13331 1.70696 1.48156 1.05646 0.74099 0.75139 0.76359 1.93573 1.30471 1.86522 1.84772 1.93548 1.77948 1.38119 1.85859 1.30290 1.11590 1.13269 1.16345 1.19417 0.96682 0.95880 0.92705 1.20831 1.32765 1.14308 0.88028 0.90416 1.24994 0.95637 0.96924 0.95591 1.69878 1.45122 1.40457 0.97805 0.86917 0.81406 0.83633 0.78451 1.19659 1.20735 1.18624 1.21315 1.00119 0.94975 0.97921 1.20961 0.92623 0.99517 0.91384 0.84900 0.84883 0.84983 0.83885 0.84385 0.88692 0.89989 0.75091 0.85690 0.85373 0.94883 0.95310 0.92338 0.84335 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.32 10.80 101.05 1.09 -0.23 16 2 S 2.50 15.45 5.80 -107.50 -0.62 14.83 16 3 O -0.94 -8.89 17.13 -57.54 -0.99 -9.88 16 4 O -0.94 -8.94 17.12 -57.54 -0.98 -9.92 16 5 C -0.66 -4.77 5.66 -39.58 -0.22 -4.99 16 6 C -0.03 -0.20 9.47 -39.58 -0.37 -0.57 16 7 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 8 C -0.04 -0.33 5.28 -104.62 -0.55 -0.88 16 9 C 0.15 1.34 6.26 -5.19 -0.03 1.31 16 10 N -1.12 -12.49 5.88 -11.65 -0.07 -12.55 16 11 S 2.59 40.62 5.46 -107.50 -0.59 40.03 16 12 O -0.96 -18.17 18.08 -57.54 -1.04 -19.21 16 13 O -0.96 -17.59 17.50 -57.54 -1.01 -18.59 16 14 C -0.58 -9.85 6.01 37.16 0.22 -9.63 16 15 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 16 C -0.52 -14.14 9.66 -34.44 -0.33 -14.48 16 17 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 20 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 24 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 25 C -0.03 -0.19 9.47 -39.58 -0.37 -0.56 16 26 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 27 H 0.13 0.10 8.14 -51.92 -0.42 -0.33 16 28 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 29 H 0.14 0.84 7.56 -52.49 -0.40 0.44 16 30 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.09 0.86 7.64 -51.92 -0.40 0.47 16 32 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.42 4.08 8.61 -34.47 -0.30 3.79 16 34 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.13 1.97 8.14 -51.92 -0.42 1.55 16 36 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 37 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.14 0.79 7.57 -52.49 -0.40 0.40 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -40.22 368.02 -10.42 -50.64 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.22 Total: -0.40 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: -1.56 Total: -31.11 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.71 Total: -38.38 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -4.02 Total: -57.61 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 56.07 SS G_CDS: -1.21 Total: 54.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.22 -10.42 -50.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348116734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.287 kcal (2) G-P(sol) polarization free energy of solvation -40.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds