Wall clock time and date at job start Wed Apr 1 2020 04:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48492 * 109.47066 * 269.99914 * 3 2 1 5 5 H 1.48505 * 109.47108 * 29.99958 * 3 2 1 6 6 H 1.48503 * 109.47174 * 149.99621 * 3 2 1 7 7 C 1.37876 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00377 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47388 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47137 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99554 * 180.02562 * 12 11 10 14 14 O 1.21587 * 120.00645 * 359.97438 * 13 12 11 15 15 N 1.34786 * 119.99683 * 179.97438 * 13 12 11 16 16 C 1.46501 * 119.99611 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46669 * 180.02562 * 16 15 13 18 18 C 1.33390 * 125.20683 * 90.00003 * 17 16 15 19 19 C 1.38422 * 114.91870 * 180.02562 * 18 17 16 20 20 C 1.33383 * 114.92604 * 0.02562 * 19 18 17 21 21 S 1.76199 * 125.20634 * 179.97438 * 20 19 18 22 22 N 1.65603 * 107.22162 * 90.01197 * 21 20 19 23 23 O 1.42103 * 106.40354 * 203.55486 * 21 20 19 24 24 O 1.42101 * 106.40060 * 336.47221 * 21 20 19 25 25 S 1.75889 * 109.59330 * 359.97438 * 20 19 18 26 26 H 0.97004 * 119.99918 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46911 * 59.99669 * 9 7 2 28 28 H 1.09001 * 109.47367 * 300.00340 * 9 7 2 29 29 H 1.09000 * 109.47606 * 59.99799 * 10 9 7 30 30 H 1.09006 * 109.47210 * 299.99672 * 10 9 7 31 31 H 1.08997 * 109.47551 * 59.99987 * 11 10 9 32 32 H 1.08998 * 109.46737 * 299.99135 * 11 10 9 33 33 H 0.96995 * 120.00261 * 359.97438 * 12 11 10 34 34 H 0.96991 * 119.99888 * 0.02562 * 15 13 12 35 35 H 1.08995 * 109.47342 * 60.00283 * 16 15 13 36 36 H 1.09000 * 109.46845 * 299.99573 * 16 15 13 37 37 H 1.07999 * 122.53431 * 0.04065 * 18 17 16 38 38 H 1.08006 * 122.53685 * 180.02562 * 19 18 17 39 39 H 0.96993 * 120.00119 * 149.99644 * 22 21 20 40 40 H 0.97005 * 119.99330 * 330.00290 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4322 -6.1006 0.0049 13 6 1.9829 -7.3713 0.0051 14 8 0.7875 -7.5935 0.0044 15 7 2.8588 -8.3958 0.0061 16 6 2.3704 -9.7769 0.0068 17 6 3.5425 -10.7242 0.0085 18 6 4.1399 -11.2066 1.0992 19 6 5.1997 -12.0624 0.8535 20 6 5.4634 -12.2746 -0.4367 21 16 6.7479 -13.3108 -1.0539 22 7 6.1120 -14.8300 -1.2266 23 8 7.0422 -12.8475 -2.3647 24 8 7.7226 -13.3985 -0.0236 25 16 4.3328 -11.3617 -1.4277 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5574 -0.8880 28 1 0.6247 -2.5563 0.8919 29 1 2.8720 -3.6036 0.8926 30 1 2.8719 -3.6052 -0.8874 31 1 0.8538 -5.0454 -0.8868 32 1 0.8534 -5.0443 0.8932 33 1 3.3859 -5.9234 0.0051 34 1 3.8124 -8.2185 0.0070 35 1 1.7651 -9.9488 -0.8832 36 1 1.7646 -9.9476 0.8968 37 1 3.8205 -10.9492 2.0983 38 1 5.7699 -12.5235 1.6464 39 1 6.4531 -15.4234 -1.9139 40 1 5.3981 -15.1264 -0.6404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351508015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:49 Heat of formation + Delta-G solvation = -84.975144 kcal Electronic energy + Delta-G solvation = -23976.473285 eV Core-core repulsion = 20044.639245 eV Total energy + Delta-G solvation = -3931.834040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.02479 -38.70021 -37.63434 -36.39130 -35.78230 -34.86455 -33.80331 -33.34749 -31.61818 -30.63966 -27.41211 -26.20492 -23.89916 -22.90303 -21.12886 -20.97394 -20.45992 -19.78691 -19.09489 -18.09900 -17.88066 -17.23802 -16.81832 -16.51305 -16.06618 -15.72548 -15.66157 -14.97545 -14.61018 -14.42097 -14.32321 -14.07678 -13.67336 -13.55536 -13.00076 -12.78361 -12.73679 -12.60417 -12.53392 -12.29712 -11.97827 -11.83331 -11.71282 -11.43419 -11.11549 -10.91515 -10.75530 -10.60858 -10.35868 -9.88341 -9.87146 -9.46003 -9.42528 -9.17505 -9.13960 -8.71163 -8.38178 -6.02893 -4.06017 -0.36812 -0.10594 0.75857 1.13616 1.73240 2.58926 2.77096 3.07782 3.23005 3.30203 3.36651 3.39390 3.90715 4.13537 4.28387 4.44063 4.53823 4.71831 4.92003 5.12149 5.22449 5.32953 5.36913 5.39460 5.64007 5.65781 5.77660 6.11673 6.17821 6.41501 6.45839 6.59056 6.71125 6.95242 6.99277 7.62288 7.74730 7.95758 8.00837 8.36596 8.60841 9.00577 9.58230 11.08318 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.001525 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.955781 B =18361.178757 C =19006.906855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.135 3.865 12 N -0.739 5.739 13 C 0.703 3.297 14 O -0.590 6.590 15 N -0.751 5.751 16 C 0.205 3.795 17 C -0.158 4.158 18 C -0.145 4.145 19 C 0.010 3.990 20 C -0.801 4.801 21 S 2.729 3.271 22 N -1.247 6.247 23 O -0.956 6.956 24 O -0.952 6.952 25 S 0.250 5.750 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.398 0.602 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.423 0.577 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.635 -34.087 -0.153 36.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C 0.012 3.988 12 N -0.393 5.393 13 C 0.402 3.598 14 O -0.468 6.468 15 N -0.409 5.409 16 C 0.079 3.921 17 C -0.279 4.279 18 C -0.177 4.177 19 C -0.026 4.026 20 C -1.003 5.003 21 S 2.813 3.187 22 N -0.922 5.922 23 O -0.946 6.946 24 O -0.942 6.942 25 S 0.518 5.482 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.228 0.772 34 H 0.232 0.768 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.173 0.827 38 H 0.176 0.824 39 H 0.254 0.746 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 11.035 -33.503 -1.944 35.327 hybrid contribution 0.683 0.732 1.784 2.046 sum 11.718 -32.771 -0.160 34.803 Atomic orbital electron populations 1.69968 1.06048 1.26689 1.50515 1.25030 0.94864 0.99306 0.95264 0.86576 0.79782 0.83413 0.78095 1.20661 1.21203 1.19920 1.21201 0.92995 0.90940 1.50992 0.92649 1.19030 0.93850 0.90800 0.97715 1.21899 0.99814 0.93274 1.00888 1.21550 0.91251 0.84059 1.01984 1.45395 1.10640 1.04303 1.78935 1.15945 0.85104 0.80727 0.77988 1.90938 1.13978 1.84060 1.57847 1.45118 1.09360 1.04345 1.82088 1.19553 0.90500 0.77725 1.04332 1.25311 1.01892 1.03174 0.97514 1.20462 0.97135 0.99808 1.00295 1.20061 0.94210 0.93801 0.94501 1.35695 1.28724 1.28255 1.07656 1.00904 0.72093 0.72189 0.73541 1.53105 1.55195 1.34241 1.49621 1.93631 1.82630 1.80198 1.38130 1.93635 1.54949 1.85925 1.59676 1.84487 1.20476 1.38166 1.05067 0.92927 0.96215 0.96226 0.92727 0.92724 0.91832 0.91844 0.77169 0.76830 0.89925 0.88945 0.82720 0.82361 0.74648 0.75450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.13 2.33 5.67 -4.04 -0.02 2.31 16 12 N -0.74 -10.23 5.56 -65.22 -0.36 -10.59 16 13 C 0.70 10.02 8.57 -86.91 -0.74 9.28 16 14 O -0.59 -10.90 16.34 5.29 0.09 -10.82 16 15 N -0.75 -7.34 5.55 -66.41 -0.37 -7.71 16 16 C 0.21 1.69 6.16 -5.19 -0.03 1.66 16 17 C -0.16 -1.05 5.88 -36.00 -0.21 -1.26 16 18 C -0.15 -0.80 10.05 -41.21 -0.41 -1.22 16 19 C 0.01 0.06 9.84 -41.21 -0.41 -0.35 16 20 C -0.80 -5.02 6.57 29.04 0.19 -4.83 16 21 S 2.73 17.53 6.43 -107.50 -0.69 16.83 16 22 N -1.25 -2.93 9.52 60.35 0.57 -2.35 16 23 O -0.96 -9.38 17.91 -57.17 -1.02 -10.41 16 24 O -0.95 -8.97 17.80 -57.17 -1.02 -9.99 16 25 S 0.25 1.72 23.20 -107.50 -2.49 -0.77 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.40 4.33 8.49 -40.82 -0.35 3.99 16 34 H 0.40 2.99 8.48 -40.82 -0.35 2.64 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.16 0.55 8.05 -52.48 -0.42 0.13 16 39 H 0.42 0.37 8.96 -34.47 -0.31 0.07 16 40 H 0.42 0.00 8.96 -34.47 -0.31 -0.31 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -38.44 376.21 -11.32 -49.77 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.08 Total: -0.36 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.33 Total: -9.74 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.58 Total: -46.60 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.96 Total: -31.21 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 19.25 SS G_CDS: -3.19 Total: 16.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.44 -11.32 -49.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351508015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.210 kcal (2) G-P(sol) polarization free energy of solvation -38.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds