Wall clock time and date at job start Wed Apr 1 2020 04:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48492 * 109.47066 * 269.99914 * 3 2 1 5 5 H 1.48505 * 109.47108 * 29.99958 * 3 2 1 6 6 H 1.48503 * 109.47174 * 149.99621 * 3 2 1 7 7 C 1.37876 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00377 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47388 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47137 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99554 * 180.02562 * 12 11 10 14 14 O 1.21587 * 120.00645 * 359.97438 * 13 12 11 15 15 N 1.34786 * 119.99683 * 179.97438 * 13 12 11 16 16 C 1.46501 * 119.99611 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46669 * 180.02562 * 16 15 13 18 18 C 1.33390 * 125.20683 * 90.00003 * 17 16 15 19 19 C 1.38422 * 114.91870 * 180.02562 * 18 17 16 20 20 C 1.33383 * 114.92604 * 0.02562 * 19 18 17 21 21 S 1.76199 * 125.20634 * 179.97438 * 20 19 18 22 22 N 1.65603 * 107.22162 * 90.01197 * 21 20 19 23 23 O 1.42103 * 106.40354 * 203.55486 * 21 20 19 24 24 O 1.42101 * 106.40060 * 336.47221 * 21 20 19 25 25 S 1.75889 * 109.59330 * 359.97438 * 20 19 18 26 26 H 0.97004 * 119.99918 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46911 * 59.99669 * 9 7 2 28 28 H 1.09001 * 109.47367 * 300.00340 * 9 7 2 29 29 H 1.09000 * 109.47606 * 59.99799 * 10 9 7 30 30 H 1.09006 * 109.47210 * 299.99672 * 10 9 7 31 31 H 1.08997 * 109.47551 * 59.99987 * 11 10 9 32 32 H 1.08998 * 109.46737 * 299.99135 * 11 10 9 33 33 H 0.96995 * 120.00261 * 359.97438 * 12 11 10 34 34 H 0.96991 * 119.99888 * 0.02562 * 15 13 12 35 35 H 1.08995 * 109.47342 * 60.00283 * 16 15 13 36 36 H 1.09000 * 109.46845 * 299.99573 * 16 15 13 37 37 H 1.07999 * 122.53431 * 0.04065 * 18 17 16 38 38 H 1.08006 * 122.53685 * 180.02562 * 19 18 17 39 39 H 0.96993 * 120.00119 * 149.99644 * 22 21 20 40 40 H 0.97005 * 119.99330 * 330.00290 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4322 -6.1006 0.0049 13 6 1.9829 -7.3713 0.0051 14 8 0.7875 -7.5935 0.0044 15 7 2.8588 -8.3958 0.0061 16 6 2.3704 -9.7769 0.0068 17 6 3.5425 -10.7242 0.0085 18 6 4.1399 -11.2066 1.0992 19 6 5.1997 -12.0624 0.8535 20 6 5.4634 -12.2746 -0.4367 21 16 6.7479 -13.3108 -1.0539 22 7 6.1120 -14.8300 -1.2266 23 8 7.0422 -12.8475 -2.3647 24 8 7.7226 -13.3985 -0.0236 25 16 4.3328 -11.3617 -1.4277 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5574 -0.8880 28 1 0.6247 -2.5563 0.8919 29 1 2.8720 -3.6036 0.8926 30 1 2.8719 -3.6052 -0.8874 31 1 0.8538 -5.0454 -0.8868 32 1 0.8534 -5.0443 0.8932 33 1 3.3859 -5.9234 0.0051 34 1 3.8124 -8.2185 0.0070 35 1 1.7651 -9.9488 -0.8832 36 1 1.7646 -9.9476 0.8968 37 1 3.8205 -10.9492 2.0983 38 1 5.7699 -12.5235 1.6464 39 1 6.4531 -15.4234 -1.9139 40 1 5.3981 -15.1264 -0.6404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351508015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:48 Heat of formation + Delta-G solvation = -117.721756 kcal Electronic energy + Delta-G solvation = -23977.893284 eV Core-core repulsion = 20044.639245 eV Total energy + Delta-G solvation = -3933.254040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11981 -39.25755 -38.26520 -37.12405 -37.02388 -35.92198 -35.19072 -34.10439 -33.12771 -31.61345 -28.73065 -27.35823 -25.02383 -24.13018 -22.30979 -21.93327 -21.61079 -20.28395 -19.82753 -18.93322 -18.50982 -18.37809 -17.73200 -17.43422 -17.09574 -16.84456 -16.49351 -16.21507 -15.83047 -15.61819 -15.46068 -15.08176 -14.43365 -14.30904 -14.19962 -13.72802 -13.59856 -13.56221 -13.31484 -13.30034 -13.21390 -13.18645 -12.74982 -12.54090 -12.52170 -12.36333 -11.92788 -11.71028 -11.66214 -11.40861 -11.36103 -11.17322 -10.54512 -10.47956 -10.41449 -9.85363 -9.67665 -8.18845 -6.30102 -0.84998 -0.62586 0.24725 0.64669 1.23246 1.42251 1.43333 1.54219 1.80509 2.08625 2.16278 2.42425 2.60164 3.14983 3.29608 3.34218 3.62219 4.02456 4.17275 4.24457 4.27119 4.42093 4.52684 4.57391 4.69782 4.92743 4.97185 4.99269 5.17841 5.20087 5.24011 5.28695 5.45940 5.54307 5.72448 5.85295 5.91339 6.23541 6.32249 6.87108 7.02319 7.39373 7.50621 8.93099 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.001525 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.955781 B =18361.178757 C =19006.906855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.150 3.850 12 N -0.729 5.729 13 C 0.702 3.298 14 O -0.635 6.635 15 N -0.732 5.732 16 C 0.205 3.795 17 C -0.161 4.161 18 C -0.135 4.135 19 C 0.015 3.985 20 C -0.801 4.801 21 S 2.750 3.250 22 N -1.230 6.230 23 O -0.993 6.993 24 O -0.983 6.983 25 S 0.225 5.775 26 H 0.263 0.737 27 H -0.007 1.007 28 H -0.006 1.006 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.412 0.588 34 H 0.412 0.588 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.175 0.825 38 H 0.181 0.819 39 H 0.432 0.568 40 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.587 -34.985 0.616 37.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.025 3.975 12 N -0.385 5.385 13 C 0.402 3.598 14 O -0.516 6.516 15 N -0.390 5.390 16 C 0.080 3.920 17 C -0.281 4.281 18 C -0.167 4.167 19 C -0.021 4.021 20 C -1.004 5.004 21 S 2.834 3.166 22 N -0.911 5.911 23 O -0.983 6.983 24 O -0.973 6.973 25 S 0.494 5.506 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.012 0.988 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.248 0.752 34 H 0.248 0.752 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.192 0.808 38 H 0.198 0.802 39 H 0.265 0.735 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 13.064 -34.454 -1.182 36.867 hybrid contribution 0.050 0.902 1.570 1.811 sum 13.114 -33.552 0.388 36.026 Atomic orbital electron populations 1.70113 1.07885 1.27743 1.51669 1.26010 0.95749 1.03493 0.94819 0.85423 0.78674 0.78373 0.78406 1.19901 1.21037 1.18502 1.21686 0.93745 0.92055 1.50451 0.91584 1.18949 0.94478 0.92898 0.95185 1.21593 0.98448 0.91772 1.02098 1.21091 0.91282 0.84464 1.00641 1.45040 1.10957 1.03551 1.78927 1.16046 0.84888 0.81245 0.77656 1.90913 1.16158 1.84728 1.59822 1.44951 1.09517 1.04085 1.80430 1.19580 0.91233 0.76939 1.04284 1.25077 1.01816 1.03542 0.97674 1.20709 0.96412 0.98762 1.00825 1.20366 0.93935 0.93184 0.94629 1.35594 1.28377 1.28439 1.07968 0.99974 0.71787 0.72585 0.72221 1.52712 1.55427 1.32749 1.50172 1.93585 1.83589 1.81269 1.39857 1.93603 1.56698 1.86574 1.60379 1.84621 1.21188 1.39054 1.05775 0.92845 0.98884 0.98803 0.91345 0.91459 0.93394 0.93246 0.75156 0.75182 0.90538 0.88594 0.80772 0.80186 0.73491 0.73803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 11 C 0.15 5.18 5.67 86.38 0.49 5.67 16 12 N -0.73 -19.28 5.56 -478.52 -2.66 -21.94 16 13 C 0.70 19.37 8.57 179.05 1.53 20.90 16 14 O -0.63 -23.49 16.34 -3.99 -0.07 -23.56 16 15 N -0.73 -13.11 5.55 -482.28 -2.68 -15.79 16 16 C 0.21 3.11 6.16 85.63 0.53 3.64 16 17 C -0.16 -1.83 5.88 24.59 0.14 -1.68 16 18 C -0.14 -1.12 10.05 21.22 0.21 -0.91 16 19 C 0.01 0.12 9.84 21.21 0.21 0.33 16 20 C -0.80 -8.71 6.57 66.72 0.44 -8.28 16 21 S 2.75 32.50 6.43 -56.49 -0.36 32.13 16 22 N -1.23 -3.81 9.52 37.02 0.35 -3.46 16 23 O -0.99 -19.19 17.91 -128.00 -2.29 -21.48 16 24 O -0.98 -17.45 17.80 -128.00 -2.28 -19.73 16 25 S 0.23 2.87 23.20 -56.49 -1.31 1.56 16 26 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.41 8.07 8.49 -92.71 -0.79 7.29 16 34 H 0.41 5.22 8.48 -92.71 -0.79 4.44 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.18 0.68 8.05 -2.91 -0.02 0.65 16 39 H 0.43 0.10 8.96 -96.75 -0.87 -0.76 16 40 H 0.43 -0.90 8.96 -96.74 -0.87 -1.77 16 Total: -1.00 -83.80 376.21 -6.61 -90.40 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -2.18 Total: 4.86 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.56 Total: -12.20 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.70 Total: -97.71 kcal Atomic # 8 Polarization: -60.12 SS G_CDS: -4.64 Total: -64.76 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 35.37 SS G_CDS: -1.67 Total: 33.69 kcal Total: -83.80 -6.61 -90.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351508015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.319 kcal (2) G-P(sol) polarization free energy of solvation -83.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds