Wall clock time and date at job start Wed Apr 1 2020 04:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99920 * 2 1 4 4 H 1.48494 * 109.46877 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46925 * 299.99754 * 3 2 1 6 6 H 1.48505 * 109.46816 * 59.99545 * 3 2 1 7 7 C 1.38951 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99148 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00485 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00191 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99963 * 0.02562 * 10 9 7 12 12 C 1.50711 * 119.99893 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46747 * 180.02562 * 12 10 9 14 14 C 1.34771 * 119.99972 * 179.97438 * 13 12 10 15 15 O 1.21588 * 119.99997 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00503 * 179.97438 * 14 13 12 17 17 C 1.38943 * 120.00288 * 179.97438 * 16 14 13 18 18 N 1.30032 * 125.58044 * 0.02858 * 17 16 14 19 19 N 1.26253 * 117.71352 * 179.97438 * 18 17 16 20 20 C 1.30439 * 116.34483 * 0.02562 * 19 18 17 21 21 C 1.47842 * 126.15924 * 180.02562 * 20 19 18 22 22 C 1.39562 * 120.14444 * 179.69792 * 21 20 19 23 23 C 1.37966 * 119.85523 * 179.69453 * 22 21 20 24 24 C 1.38352 * 120.13864 * 0.57709 * 23 22 21 25 25 C 1.38350 * 120.29725 * 359.71867 * 24 23 22 26 26 C 1.37963 * 120.14106 * 359.97438 * 25 24 23 27 27 S 1.71286 * 125.57690 * 179.97438 * 17 16 14 28 28 H 0.97001 * 119.99981 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99741 * 0.02562 * 9 7 2 30 30 H 1.08990 * 109.47034 * 60.00462 * 12 10 9 31 31 H 1.08996 * 109.47002 * 299.99940 * 12 10 9 32 32 H 0.96998 * 119.99786 * 359.97438 * 13 12 10 33 33 H 0.96998 * 119.99255 * 0.02562 * 16 14 13 34 34 H 1.08004 * 120.07086 * 359.97392 * 22 21 20 35 35 H 1.07999 * 119.92929 * 180.29845 * 23 22 21 36 36 H 1.08003 * 119.85058 * 179.69593 * 24 23 22 37 37 H 1.07996 * 119.93212 * 179.97438 * 25 24 23 38 38 H 1.07999 * 120.07400 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8630 0.0022 13 7 2.1958 -5.9765 0.0027 14 6 1.7466 -7.2471 0.0038 15 8 0.5512 -7.4694 0.0039 16 7 2.6224 -8.2716 0.0037 17 6 2.1593 -9.5815 0.0054 18 7 0.9100 -9.9423 0.0065 19 7 0.6560 -11.1791 0.0075 20 6 1.6846 -11.9812 0.0077 21 6 1.6385 -13.4589 0.0083 22 6 2.8229 -14.1971 0.0021 23 6 2.7729 -15.5759 0.0090 24 6 1.5520 -16.2267 0.0100 25 6 0.3742 -15.5009 0.0099 26 6 0.4103 -14.1218 0.0093 27 16 3.1405 -10.9854 0.0049 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0016 30 1 0.6168 -4.9209 -0.8875 31 1 0.6174 -4.9205 0.8924 32 1 3.1494 -5.7991 0.0022 33 1 3.5760 -8.0942 0.0033 34 1 3.7765 -13.6902 -0.0035 35 1 3.6887 -16.1483 0.0091 36 1 1.5183 -17.3062 0.0104 37 1 -0.5756 -16.0150 0.0102 38 1 -0.5098 -13.5563 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353257093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:36 Heat of formation + Delta-G solvation = 40.830907 kcal Electronic energy + Delta-G solvation = -25179.029831 eV Core-core repulsion = 21149.499950 eV Total energy + Delta-G solvation = -4029.529880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49611 -40.15810 -39.37621 -38.33014 -35.52888 -34.56876 -33.81951 -32.83369 -31.45275 -31.43545 -29.64356 -27.88139 -26.28473 -24.62301 -23.55739 -22.96352 -21.97811 -20.02971 -20.00216 -19.54925 -18.42213 -17.99245 -17.82910 -16.85365 -16.41338 -15.95140 -15.66548 -15.37919 -15.16138 -14.95591 -14.70018 -14.20879 -14.19347 -14.16101 -13.87696 -13.60414 -13.47486 -13.34004 -12.29200 -12.28269 -11.99905 -11.67728 -11.61587 -11.61191 -11.17555 -10.87821 -10.58813 -10.44395 -10.36204 -10.30229 -9.99021 -9.69709 -9.53967 -9.43042 -9.01331 -8.70918 -8.47718 -8.15396 -6.55909 -3.98294 -0.19462 0.18876 0.87034 0.93498 1.10144 2.22641 2.43277 3.06885 3.15658 3.19998 3.26225 3.39597 3.61790 3.67812 3.90203 4.09341 4.40136 4.48220 4.61224 4.71426 4.78929 4.80027 4.99576 5.12613 5.16275 5.39092 5.57735 5.74334 5.77006 5.88730 5.94998 5.98739 6.00828 6.04395 6.40754 6.44633 6.48188 7.41962 7.74767 7.86856 8.33819 8.39550 8.50375 8.99631 9.33536 9.80640 10.60795 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.050326 B = 0.001554 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.234512 B =18018.033481 C =18559.122527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.546 5.546 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.711 5.711 14 C 0.697 3.303 15 O -0.529 6.529 16 N -0.633 5.633 17 C 0.255 3.745 18 N -0.263 5.263 19 N -0.213 5.213 20 C 0.026 3.974 21 C -0.015 4.015 22 C -0.099 4.099 23 C -0.117 4.117 24 C -0.106 4.106 25 C -0.118 4.118 26 C -0.074 4.074 27 S 0.125 5.875 28 H 0.274 0.726 29 H 0.397 0.603 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.409 0.591 33 H 0.423 0.577 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.241 -30.126 0.010 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.212 3.788 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.370 5.370 14 C 0.393 3.607 15 O -0.399 6.399 16 N -0.287 5.287 17 C -0.115 4.115 18 N -0.108 5.108 19 N -0.051 5.051 20 C -0.252 4.252 21 C -0.020 4.020 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.095 4.095 27 S 0.366 5.634 28 H 0.084 0.916 29 H 0.231 0.769 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.247 0.753 33 H 0.261 0.739 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.486 -29.718 0.009 30.220 hybrid contribution 0.738 1.247 0.001 1.449 sum 6.224 -28.470 0.010 29.143 Atomic orbital electron populations 1.69622 1.06034 1.28535 1.49013 1.25342 0.95670 0.99986 0.96657 0.85747 0.79657 0.80750 0.77870 1.19123 1.20573 1.20577 1.19781 0.93506 0.81921 1.48376 0.87564 1.41782 1.09558 1.04426 1.62277 1.19659 0.88260 0.84900 0.85934 1.90492 1.13668 1.86785 1.57634 1.20908 0.90986 0.84454 1.03711 1.44715 1.11786 1.02612 1.77853 1.15849 0.85116 0.80419 0.79267 1.91095 1.12609 1.82809 1.53422 1.42027 1.10822 1.00408 1.75483 1.25626 0.92907 0.91380 1.01599 1.71658 1.13019 1.06568 1.19577 1.71836 1.25849 0.95398 1.11972 1.27709 0.89386 0.99089 1.09032 1.17622 0.94699 0.85853 1.03796 1.21193 0.96628 0.94504 0.99684 1.21047 0.98374 0.93739 1.00391 1.21352 0.92450 1.00309 0.98406 1.21174 0.98805 0.93579 1.00086 1.21330 0.97243 0.94421 0.96553 1.84522 1.10099 0.97252 1.71500 0.91551 0.76942 0.89485 0.89492 0.75257 0.73897 0.85727 0.85252 0.85540 0.85166 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.54 13.05 55.50 0.72 -22.81 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.31 -8.17 9.68 -14.94 -0.14 -8.32 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.23 5.29 -10.96 -0.06 -13.29 16 10 C 0.43 9.45 7.85 -10.98 -0.09 9.37 16 11 O -0.60 -14.71 15.24 5.55 0.08 -14.62 16 12 C 0.13 2.27 6.15 -5.19 -0.03 2.23 16 13 N -0.71 -11.20 5.53 -66.41 -0.37 -11.56 16 14 C 0.70 11.16 8.53 -86.92 -0.74 10.42 16 15 O -0.53 -10.62 15.01 5.29 0.08 -10.54 16 16 N -0.63 -7.70 5.41 -17.33 -0.09 -7.80 16 17 C 0.26 3.37 8.13 -87.07 -0.71 2.67 16 18 N -0.26 -4.38 9.73 29.96 0.29 -4.09 16 19 N -0.21 -3.16 11.33 33.02 0.37 -2.78 16 20 C 0.03 0.30 7.44 -14.21 -0.11 0.19 16 21 C -0.02 -0.14 5.87 -104.98 -0.62 -0.76 16 22 C -0.10 -0.69 9.62 -39.19 -0.38 -1.07 16 23 C -0.12 -0.65 10.03 -39.64 -0.40 -1.05 16 24 C -0.11 -0.57 10.04 -39.50 -0.40 -0.96 16 25 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16 26 C -0.07 -0.63 9.69 -39.19 -0.38 -1.01 16 27 S 0.12 1.13 22.35 -107.50 -2.40 -1.27 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.40 9.27 7.90 -40.82 -0.32 8.95 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.41 5.99 7.45 -40.82 -0.30 5.68 16 33 H 0.42 3.37 8.83 -40.82 -0.36 3.01 16 34 H 0.12 0.67 7.36 -52.48 -0.39 0.28 16 35 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 36 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.14 1.22 7.85 -52.49 -0.41 0.81 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -34.65 357.71 -8.89 -43.54 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -3.41 Total: 13.48 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -4.48 Total: 11.16 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.87 Total: -62.33 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.16 Total: -25.17 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.40 Total: -1.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.65 -8.89 -43.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353257093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.371 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds