Wall clock time and date at job start Wed Apr 1 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46823 * 2 1 4 4 C 1.36940 * 119.99798 * 275.96433 * 3 2 1 5 5 H 1.08005 * 119.99442 * 146.59381 * 4 3 2 6 6 C 1.38812 * 120.00053 * 326.59495 * 4 3 2 7 7 N 1.31614 * 120.00489 * 336.11384 * 6 4 3 8 8 Si 1.86798 * 119.99596 * 156.11591 * 6 4 3 9 9 H 1.48503 * 109.47420 * 59.99754 * 8 6 4 10 10 H 1.48504 * 109.47078 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47477 * 299.99945 * 8 6 4 12 12 S 1.65593 * 119.99748 * 95.96860 * 3 2 1 13 13 O 1.42103 * 106.40299 * 156.45722 * 12 3 2 14 14 O 1.42100 * 106.40485 * 23.53887 * 12 3 2 15 15 C 1.76201 * 107.21892 * 269.99623 * 12 3 2 16 16 C 1.38239 * 119.99909 * 269.72624 * 15 12 3 17 17 C 1.38232 * 119.99547 * 179.76415 * 16 15 12 18 18 C 1.38234 * 120.00101 * 0.48552 * 17 16 15 19 19 C 1.50697 * 120.00005 * 179.76476 * 18 17 16 20 20 S 1.81401 * 109.47643 * 270.02864 * 19 18 17 21 21 C 1.81401 * 101.92417 * 180.02562 * 20 19 18 22 22 O 1.42102 * 108.57609 * 294.48867 * 20 19 18 23 23 O 1.42101 * 108.57858 * 65.51052 * 20 19 18 24 24 C 1.38231 * 120.00233 * 359.79757 * 18 17 16 25 25 C 1.38233 * 119.99649 * 90.00327 * 15 12 3 26 26 H 1.08995 * 109.47156 * 300.00127 * 1 2 3 27 27 H 1.09006 * 109.46926 * 60.00120 * 1 2 3 28 28 H 1.09002 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47104 * 240.00416 * 2 1 3 30 30 H 1.08997 * 109.47378 * 120.00170 * 2 1 3 31 31 H 0.96991 * 120.00561 * 180.02562 * 7 6 4 32 32 H 1.07997 * 119.99830 * 359.97438 * 16 15 12 33 33 H 1.07998 * 119.99954 * 180.25583 * 17 16 15 34 34 H 1.09003 * 109.47377 * 30.02649 * 19 18 17 35 35 H 1.09003 * 109.47341 * 150.02333 * 19 18 17 36 36 H 1.08998 * 109.47245 * 60.00044 * 21 20 19 37 37 H 1.09002 * 109.46951 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.46912 * 300.00010 * 21 20 19 39 39 H 1.08002 * 120.00292 * 179.97438 * 24 18 17 40 40 H 1.07995 * 120.00290 * 0.02562 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1303 2.0679 -1.1795 5 1 1.9552 3.1334 -1.2028 6 6 2.4689 1.3944 -2.3452 7 7 3.1248 0.2552 -2.2803 8 14 1.9935 2.1051 -4.0060 9 1 2.6187 3.4422 -4.1696 10 1 2.4681 1.2020 -5.0851 11 1 0.5164 2.2366 -4.0838 12 16 2.4348 2.1122 1.4263 13 8 3.3458 3.1509 1.0939 14 8 2.7468 1.0667 2.3368 15 6 0.9878 2.9004 2.0506 16 6 0.7101 4.2096 1.7047 17 6 -0.4276 4.8263 2.1905 18 6 -1.2824 4.1371 3.0303 19 6 -2.5199 4.8112 3.5641 20 16 -2.1310 5.6350 5.1328 21 6 -3.7314 6.3616 5.5815 22 8 -1.7990 4.6433 6.0948 23 8 -1.2115 6.6875 4.8756 24 6 -1.0016 2.8298 3.3808 25 6 0.1334 2.2113 2.8908 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.3617 -0.2151 -3.0947 32 1 1.3803 4.7495 1.0522 33 1 -0.6467 5.8479 1.9170 34 1 -2.8712 5.5496 2.8434 35 1 -3.2977 4.0654 3.7285 36 1 -4.4732 5.5699 5.6866 37 1 -3.6352 6.8976 6.5257 38 1 -4.0474 7.0543 4.8015 39 1 -1.6692 2.2914 4.0373 40 1 0.3529 1.1900 3.1649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356066845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:19 Heat of formation + Delta-G solvation = -103.658637 kcal Electronic energy + Delta-G solvation = -26778.942494 eV Core-core repulsion = 22814.005526 eV Total energy + Delta-G solvation = -3964.936968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.28371 -37.26587 -36.28634 -36.16954 -35.87228 -34.69521 -33.30950 -31.67568 -30.94507 -30.11202 -29.23026 -27.67000 -24.61760 -22.77898 -22.13775 -21.57319 -19.20061 -18.62424 -17.79187 -17.03670 -16.90020 -16.49330 -16.41613 -16.20586 -15.45006 -15.21176 -14.71747 -14.26647 -14.21990 -13.74624 -13.66240 -13.48598 -13.45960 -13.02799 -12.97777 -12.79381 -12.45307 -12.34113 -12.26094 -12.10735 -11.96627 -11.51011 -11.29954 -11.17429 -11.13983 -11.01269 -10.96715 -10.88548 -10.83403 -10.44980 -10.19870 -10.14477 -9.81155 -9.13238 -8.93825 -8.89625 -7.73252 -6.26702 -3.95133 -0.49763 0.95617 1.43428 1.50629 2.37271 3.21560 3.26476 3.26753 3.29340 3.57582 3.60707 4.09555 4.16008 4.23626 4.34629 4.47200 4.60337 4.74807 4.88512 4.94827 5.04888 5.07833 5.17885 5.34231 5.47279 5.77574 5.77767 6.04702 6.10182 6.18988 6.24349 6.32302 6.35971 6.41572 6.59121 6.91974 6.92814 7.29159 7.41203 7.78859 8.41949 8.99913 9.37281 10.75001 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.003224 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.339956 B = 8682.812413 C = 9061.895730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.840 5.840 4 C -0.287 4.287 5 H 0.092 0.908 6 C 0.040 3.960 7 N -0.856 5.856 8 Si 0.915 3.085 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.275 1.275 12 S 2.630 3.370 13 O -0.969 6.969 14 O -0.994 6.994 15 C -0.641 4.641 16 C -0.016 4.016 17 C -0.126 4.126 18 C -0.059 4.059 19 C -0.567 4.567 20 S 2.415 3.585 21 C -0.659 4.659 22 O -0.930 6.930 23 O -0.930 6.930 24 C -0.127 4.127 25 C -0.023 4.023 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.268 0.732 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.921 7.535 9.389 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.672 5.672 4 C -0.423 4.423 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.496 5.496 8 Si 0.741 3.259 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.200 1.200 12 S 2.726 3.274 13 O -0.958 6.958 14 O -0.984 6.984 15 C -0.724 4.724 16 C -0.035 4.035 17 C -0.145 4.145 18 C -0.061 4.061 19 C -0.694 4.694 20 S 2.597 3.403 21 C -0.808 4.808 22 O -0.927 6.927 23 O -0.927 6.927 24 C -0.147 4.147 25 C -0.042 4.042 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.266 7.512 10.307 19.893 hybrid contribution -1.922 0.535 -1.223 2.340 sum -17.189 8.047 9.084 21.041 Atomic orbital electron populations 1.22207 0.98759 1.00013 1.01285 1.21396 0.91610 0.83959 1.04850 1.52602 1.76541 1.20629 1.17406 1.19045 1.45361 0.93985 0.83859 0.89084 1.25301 0.95049 0.96856 0.99572 1.69956 1.33732 1.16835 1.29061 0.86195 0.79047 0.79081 0.81533 1.19677 1.20969 1.20026 1.04841 0.73859 0.74017 0.74668 1.93448 1.59339 1.59471 1.83571 1.93421 1.82642 1.55801 1.66502 1.31734 1.23924 1.06178 1.10556 1.20986 0.95151 0.92575 0.94811 1.21195 0.95055 1.00311 0.97986 1.19011 0.93561 0.94813 0.98688 1.29389 1.04890 1.13212 1.21897 1.08231 0.77994 0.76515 0.77553 1.30320 1.23832 1.13969 1.12651 1.93615 1.81712 1.59715 1.57692 1.93618 1.58376 1.55728 1.84949 1.21159 0.98433 0.94157 1.00931 1.20930 0.91644 0.99656 0.91943 0.94420 0.92253 0.93381 0.86604 0.92185 0.92166 0.83652 0.84751 0.83833 0.83868 0.85303 0.85177 0.85296 0.84830 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.20 37.16 0.38 -2.63 16 2 C 0.11 2.41 6.01 -4.04 -0.02 2.39 16 3 N -0.84 -20.20 2.85 -59.90 -0.17 -20.37 16 4 C -0.29 -7.29 8.87 -15.06 -0.13 -7.42 16 5 H 0.09 2.23 7.94 -52.48 -0.42 1.81 16 6 C 0.04 1.00 4.98 -17.43 -0.09 0.92 16 7 N -0.86 -22.59 11.27 55.49 0.63 -21.96 16 8 Si 0.92 19.58 29.62 -169.99 -5.03 14.54 16 9 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 S 2.63 61.04 5.65 -107.50 -0.61 60.43 16 13 O -0.97 -25.02 16.49 -57.17 -0.94 -25.96 16 14 O -0.99 -24.25 15.83 -57.17 -0.90 -25.15 16 15 C -0.64 -12.33 5.97 -39.58 -0.24 -12.56 16 16 C -0.02 -0.29 9.52 -39.58 -0.38 -0.66 16 17 C -0.13 -1.81 9.70 -39.58 -0.38 -2.19 16 18 C -0.06 -0.76 5.14 -104.63 -0.54 -1.30 16 19 C -0.57 -4.10 5.93 36.00 0.21 -3.89 16 20 S 2.42 20.22 5.34 -107.50 -0.57 19.64 16 21 C -0.66 -2.37 10.62 101.05 1.07 -1.30 16 22 O -0.93 -11.49 18.10 -57.83 -1.05 -12.53 16 23 O -0.93 -11.59 18.10 -57.83 -1.05 -12.63 16 24 C -0.13 -1.78 9.70 -39.58 -0.38 -2.16 16 25 C -0.02 -0.38 8.53 -39.58 -0.34 -0.72 16 26 H 0.04 0.63 7.11 -51.93 -0.37 0.26 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.12 2.81 5.31 -51.93 -0.28 2.53 16 30 H 0.06 1.30 6.90 -51.93 -0.36 0.94 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.15 2.48 7.61 -52.49 -0.40 2.08 16 33 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.14 0.61 8.09 -51.92 -0.42 0.19 16 35 H 0.14 0.59 8.09 -51.92 -0.42 0.17 16 36 H 0.13 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.14 2.25 7.62 -52.49 -0.40 1.85 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -37.32 363.55 -10.21 -47.53 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.15 Total: 2.51 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: -0.84 Total: -31.53 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.45 Total: -42.34 kcal Atomic # 8 Polarization: -72.34 SS G_CDS: -3.94 Total: -76.28 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 16 Polarization: 81.26 SS G_CDS: -1.18 Total: 80.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.32 -10.21 -47.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356066845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.125 kcal (2) G-P(sol) polarization free energy of solvation -37.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds