Wall clock time and date at job start Wed Apr 1 2020 04:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46823 * 2 1 4 4 C 1.36940 * 119.99798 * 275.96433 * 3 2 1 5 5 H 1.08005 * 119.99442 * 146.59381 * 4 3 2 6 6 C 1.38812 * 120.00053 * 326.59495 * 4 3 2 7 7 N 1.31614 * 120.00489 * 336.11384 * 6 4 3 8 8 Si 1.86798 * 119.99596 * 156.11591 * 6 4 3 9 9 H 1.48503 * 109.47420 * 59.99754 * 8 6 4 10 10 H 1.48504 * 109.47078 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47477 * 299.99945 * 8 6 4 12 12 S 1.65593 * 119.99748 * 95.96860 * 3 2 1 13 13 O 1.42103 * 106.40299 * 156.45722 * 12 3 2 14 14 O 1.42100 * 106.40485 * 23.53887 * 12 3 2 15 15 C 1.76201 * 107.21892 * 269.99623 * 12 3 2 16 16 C 1.38239 * 119.99909 * 269.72624 * 15 12 3 17 17 C 1.38232 * 119.99547 * 179.76415 * 16 15 12 18 18 C 1.38234 * 120.00101 * 0.48552 * 17 16 15 19 19 C 1.50697 * 120.00005 * 179.76476 * 18 17 16 20 20 S 1.81401 * 109.47643 * 270.02864 * 19 18 17 21 21 C 1.81401 * 101.92417 * 180.02562 * 20 19 18 22 22 O 1.42102 * 108.57609 * 294.48867 * 20 19 18 23 23 O 1.42101 * 108.57858 * 65.51052 * 20 19 18 24 24 C 1.38231 * 120.00233 * 359.79757 * 18 17 16 25 25 C 1.38233 * 119.99649 * 90.00327 * 15 12 3 26 26 H 1.08995 * 109.47156 * 300.00127 * 1 2 3 27 27 H 1.09006 * 109.46926 * 60.00120 * 1 2 3 28 28 H 1.09002 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47104 * 240.00416 * 2 1 3 30 30 H 1.08997 * 109.47378 * 120.00170 * 2 1 3 31 31 H 0.96991 * 120.00561 * 180.02562 * 7 6 4 32 32 H 1.07997 * 119.99830 * 359.97438 * 16 15 12 33 33 H 1.07998 * 119.99954 * 180.25583 * 17 16 15 34 34 H 1.09003 * 109.47377 * 30.02649 * 19 18 17 35 35 H 1.09003 * 109.47341 * 150.02333 * 19 18 17 36 36 H 1.08998 * 109.47245 * 60.00044 * 21 20 19 37 37 H 1.09002 * 109.46951 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.46912 * 300.00010 * 21 20 19 39 39 H 1.08002 * 120.00292 * 179.97438 * 24 18 17 40 40 H 1.07995 * 120.00290 * 0.02562 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1303 2.0679 -1.1795 5 1 1.9552 3.1334 -1.2028 6 6 2.4689 1.3944 -2.3452 7 7 3.1248 0.2552 -2.2803 8 14 1.9935 2.1051 -4.0060 9 1 2.6187 3.4422 -4.1696 10 1 2.4681 1.2020 -5.0851 11 1 0.5164 2.2366 -4.0838 12 16 2.4348 2.1122 1.4263 13 8 3.3458 3.1509 1.0939 14 8 2.7468 1.0667 2.3368 15 6 0.9878 2.9004 2.0506 16 6 0.7101 4.2096 1.7047 17 6 -0.4276 4.8263 2.1905 18 6 -1.2824 4.1371 3.0303 19 6 -2.5199 4.8112 3.5641 20 16 -2.1310 5.6350 5.1328 21 6 -3.7314 6.3616 5.5815 22 8 -1.7990 4.6433 6.0948 23 8 -1.2115 6.6875 4.8756 24 6 -1.0016 2.8298 3.3808 25 6 0.1334 2.2113 2.8908 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.3617 -0.2151 -3.0947 32 1 1.3803 4.7495 1.0522 33 1 -0.6467 5.8479 1.9170 34 1 -2.8712 5.5496 2.8434 35 1 -3.2977 4.0654 3.7285 36 1 -4.4732 5.5699 5.6866 37 1 -3.6352 6.8976 6.5257 38 1 -4.0474 7.0543 4.8015 39 1 -1.6692 2.2914 4.0373 40 1 0.3529 1.1900 3.1649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356066845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:18 Heat of formation + Delta-G solvation = -133.369129 kcal Electronic energy + Delta-G solvation = -26780.230838 eV Core-core repulsion = 22814.005526 eV Total energy + Delta-G solvation = -3966.225312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.44055 -38.07139 -37.99736 -37.70528 -37.01297 -36.62192 -34.32718 -33.56098 -32.14875 -30.94479 -30.45904 -28.56997 -26.50825 -23.97607 -23.51084 -23.09984 -20.39114 -19.83995 -19.38995 -18.54096 -18.13293 -17.61591 -17.38800 -17.22700 -16.72190 -16.45659 -16.16433 -15.91387 -15.45415 -15.22042 -14.64457 -14.47598 -14.27711 -14.14833 -13.93966 -13.87993 -13.65600 -13.64109 -13.32579 -13.13639 -13.09027 -13.01658 -12.97086 -12.85518 -12.62974 -12.59560 -12.31188 -12.23806 -12.14477 -11.97227 -11.86253 -11.61361 -11.53461 -10.91825 -10.12808 -10.10697 -9.60785 -8.17950 -5.92792 -1.12648 -0.35347 -0.12433 0.22816 1.50785 1.51968 1.60708 1.85280 2.22613 2.44353 2.70960 2.71939 2.91359 3.09558 3.17844 3.38547 3.46571 3.72422 3.87997 4.09598 4.14394 4.26340 4.32346 4.40365 4.46676 4.48229 4.68716 4.73184 4.74596 4.90184 4.97578 5.00802 5.04759 5.09832 5.19565 5.28734 5.48782 5.62666 5.75691 5.94964 6.50547 7.07539 7.44811 8.83567 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.003224 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.339956 B = 8682.812413 C = 9061.895730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.103 3.897 3 N -0.850 5.850 4 C -0.307 4.307 5 H 0.090 0.910 6 C -0.004 4.004 7 N -0.890 5.890 8 Si 0.979 3.021 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.261 1.261 12 S 2.630 3.370 13 O -1.011 7.011 14 O -1.020 7.020 15 C -0.658 4.658 16 C -0.039 4.039 17 C -0.130 4.130 18 C -0.050 4.050 19 C -0.563 4.563 20 S 2.404 3.596 21 C -0.627 4.627 22 O -0.983 6.983 23 O -0.984 6.984 24 C -0.128 4.128 25 C -0.038 4.038 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.270 0.730 32 H 0.135 0.865 33 H 0.167 0.833 34 H 0.184 0.816 35 H 0.186 0.814 36 H 0.161 0.839 37 H 0.136 0.864 38 H 0.159 0.841 39 H 0.171 0.829 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.956 9.086 9.874 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 N -0.682 5.682 4 C -0.442 4.442 5 H 0.108 0.892 6 C -0.208 4.208 7 N -0.530 5.530 8 Si 0.802 3.198 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.185 1.185 12 S 2.733 3.267 13 O -1.000 7.000 14 O -1.009 7.009 15 C -0.747 4.747 16 C -0.058 4.058 17 C -0.149 4.149 18 C -0.052 4.052 19 C -0.690 4.690 20 S 2.592 3.408 21 C -0.780 4.780 22 O -0.980 6.980 23 O -0.982 6.982 24 C -0.148 4.148 25 C -0.058 4.058 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.184 0.816 34 H 0.201 0.799 35 H 0.204 0.796 36 H 0.179 0.821 37 H 0.155 0.845 38 H 0.178 0.822 39 H 0.189 0.811 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.203 9.009 10.765 24.601 hybrid contribution -0.529 0.148 -1.206 1.325 sum -20.732 9.157 9.559 24.597 Atomic orbital electron populations 1.22083 0.95578 1.01911 1.01540 1.21444 0.94309 0.83061 1.03535 1.52681 1.76973 1.21266 1.17317 1.19293 1.45869 0.94265 0.84763 0.89209 1.26152 0.94660 0.97196 1.02790 1.70069 1.34803 1.18176 1.29982 0.85227 0.79333 0.78134 0.77105 1.19619 1.20721 1.18524 1.04225 0.74813 0.73379 0.74285 1.93381 1.62218 1.60262 1.84187 1.93370 1.83989 1.56833 1.66740 1.30879 1.23142 1.07189 1.13512 1.21097 0.96778 0.92203 0.95764 1.21603 0.93862 1.01722 0.97722 1.19608 0.94832 0.94345 0.96388 1.29489 1.03076 1.14930 1.21518 1.08084 0.79862 0.75549 0.77256 1.30046 1.19005 1.15107 1.13857 1.93558 1.83939 1.61276 1.59213 1.93561 1.62255 1.56797 1.85556 1.21632 0.97591 0.95011 1.00523 1.21116 0.92605 1.00005 0.92036 0.93019 0.93040 0.90589 0.88698 0.92646 0.92030 0.84673 0.81587 0.79856 0.79606 0.82119 0.84524 0.82238 0.81140 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.55 10.20 71.98 0.73 -4.81 16 2 C 0.10 4.75 6.01 86.38 0.52 5.27 16 3 N -0.85 -42.83 2.85 -343.44 -0.98 -43.81 16 4 C -0.31 -16.20 8.87 84.03 0.75 -15.46 16 5 H 0.09 4.62 7.94 -2.91 -0.02 4.59 16 6 C 0.00 -0.19 4.98 84.86 0.42 0.24 16 7 N -0.89 -48.62 11.27 21.65 0.24 -48.38 16 8 Si 0.98 40.60 29.62 68.60 2.03 42.63 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 12 S 2.63 129.45 5.65 -56.49 -0.32 129.13 16 13 O -1.01 -55.90 16.49 -128.00 -2.11 -58.01 16 14 O -1.02 -52.72 15.83 -128.00 -2.03 -54.74 16 15 C -0.66 -26.08 5.97 22.27 0.13 -25.95 16 16 C -0.04 -1.40 9.52 22.27 0.21 -1.18 16 17 C -0.13 -3.48 9.70 22.27 0.22 -3.26 16 18 C -0.05 -1.12 5.14 -19.87 -0.10 -1.23 16 19 C -0.56 -5.00 5.93 71.24 0.42 -4.57 16 20 S 2.40 32.04 5.34 -56.49 -0.30 31.74 16 21 C -0.63 -0.71 10.62 113.37 1.20 0.49 16 22 O -0.98 -22.35 18.10 -127.37 -2.30 -24.65 16 23 O -0.98 -22.92 18.10 -127.37 -2.31 -25.23 16 24 C -0.13 -3.25 9.70 22.27 0.22 -3.03 16 25 C -0.04 -1.29 8.53 22.27 0.19 -1.10 16 26 H 0.05 1.71 7.11 -2.39 -0.02 1.69 16 27 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 29 H 0.10 4.81 5.31 -2.39 -0.01 4.79 16 30 H 0.06 2.52 6.90 -2.39 -0.02 2.51 16 31 H 0.27 13.83 8.31 -92.72 -0.77 13.06 16 32 H 0.14 4.91 7.61 -2.91 -0.02 4.89 16 33 H 0.17 3.26 8.06 -2.91 -0.02 3.23 16 34 H 0.18 0.25 8.09 -2.39 -0.02 0.24 16 35 H 0.19 0.14 8.09 -2.39 -0.02 0.12 16 36 H 0.16 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.16 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 40 H 0.14 4.60 7.62 -2.91 -0.02 4.58 16 Total: -1.00 -88.78 363.55 -2.10 -90.89 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.05 Total: 15.04 kcal Atomic # 6 Polarization: -59.51 SS G_CDS: 4.91 Total: -54.60 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -0.73 Total: -92.19 kcal Atomic # 8 Polarization: -153.89 SS G_CDS: -8.75 Total: -162.64 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: 161.48 SS G_CDS: -0.62 Total: 160.86 kcal Total: -88.78 -2.10 -90.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356066845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.482 kcal (2) G-P(sol) polarization free energy of solvation -88.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds