Wall clock time and date at job start Wed Apr 1 2020 04:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.38352 * 120.34370 * 269.72581 * 9 6 5 11 11 N 1.31918 * 121.09431 * 179.70010 * 10 9 6 12 12 C 1.31697 * 121.88197 * 0.58971 * 11 10 9 13 13 C 1.39583 * 120.55558 * 359.69677 * 12 11 10 14 14 C 1.43205 * 120.56148 * 180.02562 * 13 12 11 15 15 N 8.89483 * 137.42691 * 279.46755 * 2 1 3 16 16 C 1.38342 * 120.34422 * 89.99896 * 9 6 5 17 17 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 18 18 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 19 19 C 1.46498 * 125.97191 * 359.96192 * 18 2 1 20 20 C 1.50707 * 109.47366 * 90.00120 * 19 18 2 21 21 H 1.08005 * 119.99361 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00150 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00047 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99784 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46902 * 90.00263 * 24 22 20 26 26 H 1.48499 * 109.47480 * 210.00074 * 24 22 20 27 27 H 1.48500 * 109.47640 * 330.00250 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 31 31 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 32 32 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 33 33 H 1.07998 * 119.45242 * 359.97438 * 10 9 6 34 34 H 1.08000 * 119.71565 * 179.72742 * 12 11 10 35 35 H 1.08005 * 120.85982 * 359.97438 * 16 9 6 36 36 H 1.09006 * 109.47531 * 210.00084 * 19 18 2 37 37 H 1.09008 * 109.47462 * 330.00263 * 19 18 2 38 38 H 0.96996 * 119.99839 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.1023 -1.3903 -1.6325 11 7 6.2283 -2.0433 -2.7718 12 6 6.7142 -1.4689 -3.8527 13 6 7.1108 -0.1308 -3.8279 14 6 7.6386 0.4941 -5.0033 15 7 8.0573 0.9898 -5.9357 16 6 6.9833 0.5903 -2.6339 17 7 3.6337 -0.6577 -0.0044 18 7 2.3016 -1.0909 -0.0060 19 6 1.8499 -2.4845 -0.0129 20 6 1.6942 -2.9551 -1.4361 21 1 1.9098 -2.2831 -2.2537 22 6 1.2766 -4.2435 -1.6944 23 7 1.0136 -5.0616 -0.6988 24 14 1.0831 -4.8266 -3.4584 25 1 2.3639 -5.4122 -3.9295 26 1 0.0142 -5.8553 -3.5253 27 1 0.7173 -3.6759 -4.3229 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1212 0.0007 32 1 4.6741 2.4387 0.0105 33 1 5.7036 -1.9015 -0.7687 34 1 6.8060 -2.0379 -4.7660 35 1 7.2799 1.6274 -2.5788 36 1 2.5847 -3.1072 0.4974 37 1 0.8914 -2.5584 0.5011 38 1 0.7195 -5.9678 -0.8805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357072220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:26 Heat of formation + Delta-G solvation = 51.939354 kcal Electronic energy + Delta-G solvation = -27730.450712 eV Core-core repulsion = 23701.402530 eV Total energy + Delta-G solvation = -4029.048182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09641 -41.55800 -38.54071 -37.87980 -37.16964 -36.79346 -35.20658 -34.14386 -33.07556 -32.75720 -32.49408 -28.48212 -27.82059 -26.10877 -25.39681 -24.96036 -22.24274 -21.71862 -21.08762 -19.62070 -18.83068 -18.63614 -18.35786 -18.14851 -17.86302 -17.43670 -16.98545 -16.31364 -15.97579 -15.85241 -15.78140 -14.70297 -14.69100 -14.54996 -14.44086 -14.40188 -14.34433 -14.14217 -13.86346 -13.78026 -13.44885 -13.43515 -13.35372 -13.24986 -13.13336 -12.74602 -12.71268 -12.64725 -12.38752 -12.17288 -11.63938 -11.50129 -11.39970 -10.85027 -10.67970 -10.66151 -9.65334 -9.16925 -8.27002 -6.42282 -1.04083 -0.78022 -0.43877 1.14242 1.30635 1.38117 1.40241 1.43566 1.51603 1.62903 1.91089 2.07599 2.34638 2.39021 2.44008 2.60868 3.02674 3.04756 3.31376 3.37751 3.52383 3.65594 3.87138 3.95261 4.00753 4.45369 4.50025 4.53475 4.67789 4.82153 4.87913 4.99161 5.03786 5.08575 5.17235 5.33289 5.60785 5.78352 5.88135 6.00888 6.15998 6.30467 6.49861 6.69159 6.96398 7.28409 8.79326 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.008924 B = 0.004735 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.776661 B = 5911.514514 C = 7876.299009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.098 3.902 3 C -0.295 4.295 4 C 0.284 3.716 5 N -0.994 5.994 6 S 2.722 3.278 7 O -0.949 6.949 8 O -0.958 6.958 9 C -0.738 4.738 10 C 0.245 3.755 11 N -0.513 5.513 12 C 0.210 3.790 13 C -0.102 4.102 14 C 0.287 3.713 15 N -0.432 5.432 16 C 0.083 3.917 17 N -0.361 5.361 18 N -0.338 5.338 19 C 0.274 3.726 20 C -0.542 4.542 21 H 0.053 0.947 22 C 0.027 3.973 23 N -0.918 5.918 24 Si 0.960 3.040 25 H -0.277 1.277 26 H -0.276 1.276 27 H -0.268 1.268 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.183 0.817 32 H 0.452 0.548 33 H 0.166 0.834 34 H 0.204 0.796 35 H 0.193 0.807 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 14.259 -1.741 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C -0.328 4.328 4 C 0.028 3.972 5 N -0.752 5.752 6 S 2.810 3.190 7 O -0.939 6.939 8 O -0.947 6.947 9 C -0.827 4.827 10 C 0.087 3.913 11 N -0.222 5.222 12 C 0.050 3.950 13 C -0.109 4.109 14 C -0.029 4.029 15 N -0.107 5.107 16 C 0.055 3.945 17 N -0.191 5.191 18 N -0.120 5.120 19 C 0.155 3.845 20 C -0.580 4.580 21 H 0.071 0.929 22 C -0.174 4.174 23 N -0.556 5.556 24 Si 0.785 3.215 25 H -0.203 1.203 26 H -0.201 1.201 27 H -0.192 1.192 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.200 0.800 32 H 0.293 0.707 33 H 0.183 0.817 34 H 0.220 0.780 35 H 0.210 0.790 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.941 12.680 -2.510 14.671 hybrid contribution -0.719 0.520 -0.864 1.239 sum 6.222 13.200 -3.375 14.978 Atomic orbital electron populations 1.20547 0.85433 1.04617 1.04146 1.21692 0.96560 0.86376 0.98637 1.21017 0.88659 1.00362 1.22746 1.18806 0.88326 0.89352 1.00716 1.52337 1.18482 1.17285 1.87119 1.01248 0.71660 0.72844 0.73288 1.93616 1.59229 1.53916 1.87172 1.93627 1.85417 1.61230 1.54463 1.31737 1.18848 1.08741 1.23346 1.22951 0.83043 0.89484 0.95780 1.68086 1.15213 1.39000 0.99861 1.23943 0.83634 0.90091 0.97295 1.16862 1.08561 0.95745 0.89708 1.24931 0.92744 0.93092 0.92164 1.81324 1.10016 1.08502 1.10872 1.21689 0.84082 1.00874 0.87904 1.77161 1.00805 1.09430 1.31749 1.48715 1.01388 1.07658 1.54255 1.19246 0.94954 0.72607 0.97663 1.21380 1.46837 0.98050 0.91735 0.92906 1.25597 0.94287 0.96141 1.01390 1.69995 1.45440 1.07337 1.32872 0.85519 0.78030 0.78263 0.79694 1.20285 1.20103 1.19247 0.88974 0.91937 0.87146 0.79998 0.70693 0.81653 0.77986 0.79023 0.95834 0.92978 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.31 9.89 71.24 0.70 -1.61 16 2 C 0.10 3.27 6.92 41.39 0.29 3.56 16 3 C -0.30 -8.30 10.74 22.11 0.24 -8.07 16 4 C 0.28 8.93 7.72 133.39 1.03 9.95 16 5 N -0.99 -22.64 5.91 -54.61 -0.32 -22.96 16 6 S 2.72 69.76 5.51 -56.49 -0.31 69.45 16 7 O -0.95 -23.21 17.35 -128.00 -2.22 -25.43 16 8 O -0.96 -32.76 16.51 -128.00 -2.11 -34.87 16 9 C -0.74 -18.69 5.92 22.32 0.13 -18.56 16 10 C 0.25 7.72 9.88 84.71 0.84 8.55 16 11 N -0.51 -15.59 10.35 -194.71 -2.01 -17.60 16 12 C 0.21 4.62 10.92 85.04 0.93 5.54 16 13 C -0.10 -1.99 5.74 -21.26 -0.12 -2.12 16 14 C 0.29 5.71 15.37 88.33 1.36 7.07 16 15 N -0.43 -10.31 18.54 19.00 0.35 -9.96 16 16 C 0.08 1.61 9.38 22.74 0.21 1.82 16 17 N -0.36 -14.38 10.10 -54.54 -0.55 -14.93 16 18 N -0.34 -14.17 3.59 -338.42 -1.22 -15.39 16 19 C 0.27 13.33 5.81 85.64 0.50 13.82 16 20 C -0.54 -28.14 9.39 25.60 0.24 -27.90 16 21 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 22 C 0.03 1.41 5.46 84.65 0.46 1.87 16 23 N -0.92 -50.16 13.29 21.45 0.28 -49.87 16 24 Si 0.96 41.53 29.54 68.60 2.03 43.56 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.92 7.71 -2.39 -0.02 1.90 16 30 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.45 6.23 8.96 -96.75 -0.87 5.37 16 33 H 0.17 6.05 6.89 -2.91 -0.02 6.03 16 34 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.19 2.43 7.70 -2.91 -0.02 2.41 16 36 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.05 2.52 7.65 -2.38 -0.02 2.50 16 38 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -71.71 360.71 1.00 -70.71 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.28 Total: 13.34 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 6.80 Total: -6.05 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -3.47 Total: -130.71 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -4.33 Total: -60.30 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 69.76 SS G_CDS: -0.31 Total: 69.45 kcal Total: -71.71 1.00 -70.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357072220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.654 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds