Wall clock time and date at job start Wed Apr 1 2020 05:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47318 * 2 1 4 4 H 1.08995 * 109.47607 * 178.47735 * 3 2 1 5 5 C 1.50705 * 109.47101 * 298.48340 * 3 2 1 6 6 H 1.07998 * 120.00598 * 119.99446 * 5 3 2 7 7 C 1.37880 * 119.99460 * 299.99326 * 5 3 2 8 8 N 1.31515 * 120.00121 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99585 * 179.97438 * 7 5 3 10 10 H 1.48489 * 109.47427 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46841 * 120.00403 * 9 7 5 12 12 H 1.48503 * 109.47017 * 240.00176 * 9 7 5 13 13 N 1.46508 * 109.47063 * 58.47724 * 3 2 1 14 14 S 1.65592 * 120.00055 * 96.38555 * 13 3 2 15 15 O 1.42098 * 104.28181 * 181.12807 * 14 13 3 16 16 O 1.42105 * 104.27850 * 308.98744 * 14 13 3 17 17 C 1.81406 * 104.45095 * 65.05521 * 14 13 3 18 18 C 1.50697 * 109.47354 * 180.02562 * 17 14 13 19 19 C 1.38170 * 120.02031 * 269.72737 * 18 17 14 20 20 C 1.38340 * 120.04033 * 179.72147 * 19 18 17 21 21 Cl 1.73598 * 119.95508 * 180.27590 * 20 19 18 22 22 C 1.38391 * 120.08481 * 0.55248 * 20 19 18 23 23 C 1.38118 * 120.04287 * 359.72283 * 22 20 19 24 24 C 1.38701 * 120.02060 * 89.99815 * 18 17 14 25 25 O 1.35919 * 120.04630 * 0.02596 * 24 18 17 26 26 C 1.42893 * 117.00345 * 179.97438 * 25 24 18 27 27 H 1.08996 * 109.47656 * 55.72153 * 1 2 3 28 28 H 1.09005 * 109.47008 * 295.72173 * 1 2 3 29 29 H 1.08998 * 109.47105 * 175.72590 * 1 2 3 30 30 H 1.08996 * 109.47639 * 120.00051 * 2 1 3 31 31 H 1.09001 * 109.47043 * 239.99950 * 2 1 3 32 32 H 0.97003 * 119.99697 * 179.97438 * 8 7 5 33 33 H 0.97005 * 119.99884 * 276.38898 * 13 3 2 34 34 H 1.08999 * 109.46754 * 300.00121 * 17 14 13 35 35 H 1.08998 * 109.46703 * 59.99901 * 17 14 13 36 36 H 1.08002 * 119.97649 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.97743 * 179.70619 * 22 20 19 38 38 H 1.08001 * 120.02053 * 179.97438 * 23 22 20 39 39 H 1.09000 * 109.47565 * 180.02562 * 26 25 24 40 40 H 1.09002 * 109.46999 * 300.00305 * 26 25 24 41 41 H 1.09002 * 109.47238 * 59.99935 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0273 5 6 1.5686 2.1420 -1.2489 6 1 0.9455 3.0208 -1.1732 7 6 1.9330 1.6599 -2.4882 8 7 2.6914 0.5894 -2.5804 9 14 1.3481 2.5265 -4.0362 10 1 0.5134 3.6966 -3.6632 11 1 2.5227 2.9865 -4.8198 12 1 0.5437 1.5854 -4.8565 13 7 1.5219 2.1436 1.1775 14 16 2.4508 2.2674 2.5427 15 8 1.6289 2.9718 3.4633 16 8 2.8684 0.9346 2.8045 17 6 3.8625 3.2892 2.0387 18 6 4.7918 3.4751 3.2103 19 6 4.6224 4.5486 4.0635 20 6 5.4718 4.7165 5.1425 21 17 5.2525 6.0621 6.2171 22 6 6.4995 3.8162 5.3629 23 6 6.6756 2.7450 4.5090 24 6 5.8212 2.5717 3.4296 25 8 5.9932 1.5184 2.5880 26 6 7.0740 0.6288 2.8745 27 1 -0.3634 0.5788 -0.8491 28 1 -0.3633 0.4460 0.9259 29 1 -0.3633 -1.0248 -0.0766 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.9474 0.2501 -3.4524 33 1 0.6347 2.5353 1.1573 34 1 4.3964 2.7959 1.2265 35 1 3.5046 4.2616 1.7004 36 1 3.8239 5.2548 3.8902 37 1 7.1645 3.9516 6.2031 38 1 7.4780 2.0430 4.6812 39 1 7.0990 -0.1650 2.1279 40 1 8.0143 1.1797 2.8501 41 1 6.9337 0.1932 3.8638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358189534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:23 Heat of formation + Delta-G solvation = -119.608437 kcal Electronic energy + Delta-G solvation = -26902.340719 eV Core-core repulsion = 22934.668409 eV Total energy + Delta-G solvation = -3967.672310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43223 -38.80014 -38.20939 -37.67664 -37.29298 -36.90149 -34.24480 -34.07371 -32.03694 -31.14985 -28.85967 -28.23823 -27.97789 -25.38239 -23.42891 -23.03841 -21.83600 -20.17768 -19.17420 -19.02379 -18.04587 -17.74269 -17.63859 -17.07528 -16.95669 -16.58701 -16.36692 -15.67649 -15.39453 -15.05915 -14.92964 -14.60427 -14.56459 -14.34677 -14.04970 -13.91115 -13.40954 -13.30397 -13.14666 -13.01174 -12.95859 -12.86425 -12.82138 -12.58784 -12.42174 -12.30067 -12.20441 -12.10648 -11.79079 -11.78387 -11.63402 -11.49531 -10.99056 -10.51733 -10.19081 -9.88477 -9.19779 -8.07426 -6.20489 -0.75690 0.05669 0.10982 1.08612 1.46129 1.50438 1.59335 1.94204 2.24606 2.38821 2.47950 2.81222 3.21831 3.27560 3.30454 3.64454 3.86638 3.96972 4.10720 4.22843 4.34384 4.40942 4.49998 4.55702 4.68972 4.72989 4.74593 4.80036 4.87911 4.90101 5.04197 5.06448 5.26648 5.42309 5.49002 5.62478 5.71593 5.74299 6.11745 6.16430 6.26184 6.47671 6.89906 7.48164 8.97348 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.003392 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.085103 B = 8252.161615 C = 8533.823306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.135 4.135 3 C 0.283 3.717 4 H 0.023 0.977 5 C -0.527 4.527 6 H 0.069 0.931 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.285 1.285 13 N -1.102 6.102 14 S 2.610 3.390 15 O -0.992 6.992 16 O -0.983 6.983 17 C -0.561 4.561 18 C -0.136 4.136 19 C -0.069 4.069 20 C -0.082 4.082 21 Cl -0.060 7.060 22 C -0.053 4.053 23 C -0.192 4.192 24 C 0.133 3.867 25 O -0.329 6.329 26 C 0.012 3.988 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.263 0.737 33 H 0.414 0.586 34 H 0.143 0.857 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.176 0.824 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.283 5.953 13.345 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.175 4.175 3 C 0.178 3.822 4 H 0.041 0.959 5 C -0.567 4.567 6 H 0.087 0.913 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.780 3.220 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.861 5.861 14 S 2.705 3.295 15 O -0.983 6.983 16 O -0.973 6.973 17 C -0.691 4.691 18 C -0.140 4.140 19 C -0.089 4.089 20 C -0.109 4.109 21 Cl -0.031 7.031 22 C -0.072 4.072 23 C -0.211 4.211 24 C 0.085 3.915 25 O -0.241 6.241 26 C -0.082 4.082 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.248 0.752 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.171 0.829 37 H 0.190 0.810 38 H 0.193 0.807 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.196 5.393 13.952 18.102 hybrid contribution -0.198 0.698 -1.485 1.653 sum 9.997 6.091 12.467 17.102 Atomic orbital electron populations 1.21490 0.96131 0.99723 1.00823 1.21875 0.96462 0.99017 1.00102 1.18306 0.92713 0.88975 0.82245 0.95932 1.21546 1.32261 1.12347 0.90499 0.91274 1.25569 0.95086 0.95478 1.01589 1.70001 1.36735 1.23350 1.25000 0.85577 0.78001 0.78726 0.79727 1.18946 1.21006 1.21096 1.55437 1.28866 1.70660 1.31186 1.04791 0.75990 0.75281 0.73397 1.93498 1.66149 1.76212 1.62419 1.93527 1.83979 1.35560 1.84230 1.29299 1.16188 1.17842 1.05722 1.18400 0.98883 0.98179 0.98491 1.21053 0.98976 0.96345 0.92513 1.20817 1.00401 0.94249 0.95444 1.98364 1.96932 1.44321 1.63522 1.21289 0.95464 0.91253 0.99225 1.21566 1.02401 1.01762 0.95338 1.19260 0.93848 0.87777 0.90594 1.86185 1.52407 1.35639 1.49909 1.23492 0.87955 0.92755 1.03997 0.92850 0.93822 0.94090 0.95596 0.90661 0.92731 0.75178 0.83875 0.81776 0.82859 0.81005 0.80697 0.87293 0.89893 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 9.51 71.98 0.68 -4.58 16 2 C -0.13 -6.47 5.69 30.59 0.17 -6.30 16 3 C 0.28 13.33 2.37 44.24 0.10 13.43 16 4 H 0.02 1.15 7.17 -2.39 -0.02 1.13 16 5 C -0.53 -25.96 7.51 25.60 0.19 -25.77 16 6 H 0.07 3.28 7.81 -2.91 -0.02 3.26 16 7 C 0.02 1.17 5.30 84.66 0.45 1.62 16 8 N -0.91 -48.75 11.31 21.45 0.24 -48.51 16 9 Si 0.95 40.52 29.54 68.60 2.03 42.54 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 13 N -1.10 -44.40 4.64 -172.51 -0.80 -45.20 16 14 S 2.61 100.09 5.35 -56.49 -0.30 99.78 16 15 O -0.99 -39.95 18.08 -127.65 -2.31 -42.26 16 16 O -0.98 -43.80 17.28 -127.65 -2.21 -46.01 16 17 C -0.56 -17.91 5.88 71.24 0.42 -17.50 16 18 C -0.14 -4.04 5.15 -19.77 -0.10 -4.14 16 19 C -0.07 -1.80 9.48 22.28 0.21 -1.58 16 20 C -0.08 -1.83 6.32 22.33 0.14 -1.68 16 21 Cl -0.06 -1.19 28.95 -2.72 -0.08 -1.27 16 22 C -0.05 -0.97 9.82 22.28 0.22 -0.75 16 23 C -0.19 -3.77 9.04 22.36 0.20 -3.57 16 24 C 0.13 3.67 6.66 22.50 0.15 3.82 16 25 O -0.33 -9.73 9.54 -92.64 -0.88 -10.61 16 26 C 0.01 0.22 9.81 113.37 1.11 1.34 16 27 H 0.05 2.32 7.12 -2.39 -0.02 2.31 16 28 H 0.04 1.70 7.59 -2.38 -0.02 1.68 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.24 7.60 -2.39 -0.02 1.22 16 31 H 0.08 3.97 6.03 -2.39 -0.01 3.95 16 32 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 33 H 0.41 15.36 8.64 -96.74 -0.84 14.53 16 34 H 0.14 4.85 6.85 -2.39 -0.02 4.84 16 35 H 0.16 4.32 8.08 -2.39 -0.02 4.30 16 36 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.18 2.16 6.30 -2.91 -0.02 2.14 16 39 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.08 1.08 7.66 -2.39 -0.02 1.06 16 41 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 Total: -1.00 -66.79 367.76 -0.12 -66.91 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.23 Total: 30.28 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 3.96 Total: -45.66 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -0.56 Total: -93.71 kcal Atomic # 8 Polarization: -93.48 SS G_CDS: -5.40 Total: -98.88 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 100.09 SS G_CDS: -0.30 Total: 99.78 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -66.79 -0.12 -66.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358189534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.694 kcal (2) G-P(sol) polarization free energy of solvation -66.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds