Wall clock time and date at job start Wed Apr 1 2020 04:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00090 * 2 1 4 4 H 1.48509 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47532 * 299.99843 * 3 2 1 6 6 H 1.48500 * 109.47542 * 60.00135 * 3 2 1 7 7 C 1.37871 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00186 * 0.28045 * 7 2 1 10 10 C 1.53005 * 109.47203 * 179.71979 * 9 7 2 11 11 S 1.81400 * 109.46956 * 180.02562 * 10 9 7 12 12 O 1.42104 * 110.54299 * 294.02295 * 11 10 9 13 13 O 1.42094 * 110.54178 * 70.77028 * 11 10 9 14 14 N 1.65599 * 104.44976 * 182.39597 * 11 10 9 15 15 C 1.46504 * 119.99636 * 63.26976 * 14 11 10 16 16 H 1.08993 * 109.44130 * 334.86427 * 15 14 11 17 17 C 1.53074 * 109.43150 * 94.77936 * 15 14 11 18 18 C 1.53408 * 108.28430 * 168.25558 * 17 15 14 19 19 O 1.42831 * 108.36376 * 295.27328 * 18 17 15 20 20 C 1.35892 * 117.86321 * 49.13144 * 19 18 17 21 21 C 1.39346 * 118.48867 * 162.98734 * 20 19 18 22 22 F 1.35102 * 119.88210 * 359.81906 * 21 20 19 23 23 C 1.38125 * 120.23386 * 179.83562 * 21 20 19 24 24 C 1.38286 * 119.95564 * 359.97438 * 23 21 20 25 25 C 1.38294 * 119.96769 * 0.07022 * 24 23 21 26 26 F 1.35102 * 119.84502 * 179.97438 * 25 24 23 27 27 C 1.38197 * 121.79655 * 342.89229 * 20 19 18 28 28 H 0.97005 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47183 * 299.71985 * 9 7 2 30 30 H 1.09005 * 109.46881 * 59.72244 * 9 7 2 31 31 H 1.08994 * 109.47057 * 300.00084 * 10 9 7 32 32 H 1.08997 * 109.47225 * 60.00113 * 10 9 7 33 33 H 0.97000 * 120.00059 * 243.27271 * 14 11 10 34 34 H 1.09001 * 109.69990 * 287.94617 * 17 15 14 35 35 H 1.08991 * 109.70471 * 48.51466 * 17 15 14 36 36 H 1.08997 * 109.69153 * 54.99516 * 18 17 15 37 37 H 1.09009 * 109.68846 * 175.51795 * 18 17 15 38 38 H 1.08003 * 120.02321 * 179.97438 * 23 21 20 39 39 H 1.08005 * 120.01739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 -0.0053 10 6 2.2452 -3.6621 -0.0104 11 16 1.3381 -5.2330 -0.0182 12 8 0.6192 -5.3997 1.1962 13 8 0.7097 -5.4397 -1.2757 14 7 2.5190 -6.3923 0.0438 15 6 3.3994 -6.4794 1.2115 16 1 3.4543 -5.5055 1.6979 17 6 2.8396 -7.5094 2.1957 18 6 3.9131 -7.7977 3.2531 19 8 5.0275 -8.4143 2.6066 20 6 5.5133 -7.8275 1.4812 21 6 6.7872 -8.1834 1.0430 22 9 7.5088 -9.0905 1.7371 23 6 7.3150 -7.6118 -0.0983 24 6 6.5777 -6.6833 -0.8100 25 6 5.3133 -6.3270 -0.3775 26 9 4.5953 -5.4193 -1.0744 27 6 4.7789 -6.8979 0.7696 28 1 -0.4850 0.8401 0.0004 29 1 0.6243 -2.5609 0.8844 30 1 0.6243 -2.5529 -0.8956 31 1 2.8718 -3.6004 -0.9001 32 1 2.8718 -3.6084 0.8798 33 1 2.6278 -7.0137 -0.6931 34 1 1.9472 -7.1101 2.6776 35 1 2.5905 -8.4278 1.6643 36 1 4.2292 -6.8646 3.7194 37 1 3.5104 -8.4691 4.0117 38 1 8.3030 -7.8898 -0.4347 39 1 6.9892 -6.2360 -1.7028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360406973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:31 Heat of formation + Delta-G solvation = -175.961883 kcal Electronic energy + Delta-G solvation = -29113.558449 eV Core-core repulsion = 24591.645790 eV Total energy + Delta-G solvation = -4521.912659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.16375 -49.10450 -41.02890 -37.78965 -36.78949 -36.22684 -35.49469 -33.92320 -31.66797 -31.19778 -31.08692 -29.79825 -25.64641 -25.44327 -24.56094 -22.72648 -21.75596 -20.85137 -19.15848 -18.68289 -18.22652 -17.78729 -17.37915 -16.62471 -16.58980 -16.33120 -16.04721 -15.62915 -15.50097 -15.28740 -15.10071 -14.84911 -14.61962 -14.56487 -14.10203 -13.63333 -13.48604 -13.32855 -12.81770 -12.74037 -12.55174 -12.15776 -11.87612 -11.73214 -11.67774 -11.64622 -11.58323 -11.24646 -11.11176 -10.99551 -10.93700 -10.44357 -10.40771 -9.97127 -9.63521 -9.19185 -9.04386 -8.58892 -8.52566 -6.14499 -4.19889 0.45890 0.63567 0.76731 2.64800 2.86843 3.07590 3.23865 3.31362 3.34671 3.67920 3.78923 4.00130 4.15917 4.24489 4.35389 4.37963 4.49294 4.63082 4.65203 4.72108 4.90870 4.94783 5.14979 5.20979 5.32218 5.37715 5.53743 5.55525 5.59731 5.63328 5.73920 5.82377 5.89460 6.21286 6.46438 6.82432 6.91701 7.27337 7.33005 7.78953 8.15321 8.83762 9.45068 10.96593 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.003419 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.557715 B = 8188.454966 C = 9003.656717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.586 4.586 11 S 2.589 3.411 12 O -0.964 6.964 13 O -0.963 6.963 14 N -1.117 6.117 15 C 0.205 3.795 16 H 0.105 0.895 17 C -0.178 4.178 18 C 0.060 3.940 19 O -0.302 6.302 20 C 0.145 3.855 21 C 0.055 3.945 22 F -0.128 7.128 23 C -0.087 4.087 24 C -0.162 4.162 25 C 0.146 3.854 26 F -0.119 7.119 27 C -0.188 4.188 28 H 0.264 0.736 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.415 0.585 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.153 0.847 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.079 -17.735 2.936 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.720 4.720 11 S 2.687 3.313 12 O -0.954 6.954 13 O -0.953 6.953 14 N -0.871 5.871 15 C 0.097 3.903 16 H 0.122 0.878 17 C -0.217 4.217 18 C -0.015 4.015 19 O -0.216 6.216 20 C 0.097 3.903 21 C 0.035 3.965 22 F -0.107 7.107 23 C -0.106 4.106 24 C -0.181 4.181 25 C 0.126 3.874 26 F -0.097 7.097 27 C -0.191 4.191 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.249 0.751 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.171 0.829 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.979 -17.875 3.158 22.315 hybrid contribution 0.968 1.168 -0.401 1.569 sum 13.947 -16.707 2.757 21.937 Atomic orbital electron populations 1.69964 1.06110 1.27095 1.49681 1.25061 0.94964 0.99537 0.94908 0.86423 0.79949 0.83193 0.77778 1.19641 1.20777 1.20803 1.21030 0.93103 0.89683 1.51989 0.91969 1.18975 0.92639 0.90556 0.98889 1.30440 1.13638 1.17639 1.10270 1.05731 0.74617 0.76648 0.74287 1.93541 1.69388 1.85241 1.47194 1.93561 1.73245 1.84981 1.43534 1.55969 1.52816 1.50981 1.27363 1.19314 0.84516 1.00134 0.86328 0.87780 1.22847 1.00302 1.01025 0.97553 1.23199 0.84120 0.99708 0.94471 1.86082 1.48581 1.50549 1.36350 1.18327 0.90866 0.92930 0.88172 1.17073 0.88569 0.95830 0.95012 1.91518 1.76509 1.64366 1.78292 1.20834 1.01036 0.95989 0.92737 1.20928 0.93401 1.00870 1.02881 1.17336 0.90068 0.89430 0.90596 1.91578 1.77270 1.63568 1.77269 1.19868 0.98373 1.02798 0.98104 0.92579 0.94760 0.94887 0.85648 0.86561 0.75138 0.87103 0.89321 0.90635 0.86223 0.82942 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.06 5.71 37.16 0.21 -10.85 16 11 S 2.59 45.15 5.38 -107.50 -0.58 44.57 16 12 O -0.96 -18.77 17.45 -57.54 -1.00 -19.78 16 13 O -0.96 -19.78 18.08 -57.54 -1.04 -20.82 16 14 N -1.12 -14.31 3.72 -5.82 -0.02 -14.33 16 15 C 0.21 2.31 2.57 -69.01 -0.18 2.14 16 16 H 0.10 1.12 6.97 -51.93 -0.36 0.76 16 17 C -0.18 -1.74 5.80 -26.48 -0.15 -1.89 16 18 C 0.06 0.49 7.03 37.37 0.26 0.75 16 19 O -0.30 -3.15 10.09 -19.40 -0.20 -3.34 16 20 C 0.14 1.53 6.48 -39.18 -0.25 1.28 16 21 C 0.06 0.55 7.30 -39.21 -0.29 0.26 16 22 F -0.13 -1.39 17.04 2.25 0.04 -1.35 16 23 C -0.09 -0.67 10.01 -39.61 -0.40 -1.07 16 24 C -0.16 -1.34 10.02 -39.54 -0.40 -1.74 16 25 C 0.15 1.54 6.99 -39.34 -0.27 1.27 16 26 F -0.12 -1.46 14.64 2.25 0.03 -1.42 16 27 C -0.19 -2.01 5.49 -104.38 -0.57 -2.58 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.13 2.22 7.51 -51.93 -0.39 1.83 16 32 H 0.12 1.92 7.27 -51.93 -0.38 1.55 16 33 H 0.42 4.68 8.64 -34.47 -0.30 4.38 16 34 H 0.11 1.14 7.73 -51.93 -0.40 0.74 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.12 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -34.81 348.48 -8.72 -43.52 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.33 Total: 2.00 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -2.59 Total: -24.81 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.71 Total: -39.83 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -2.24 Total: -43.94 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.07 Total: -2.77 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.58 Total: 44.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.81 -8.72 -43.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360406973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.438 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds