Wall clock time and date at job start Wed Apr 1 2020 04:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00090 * 2 1 4 4 H 1.48509 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47532 * 299.99843 * 3 2 1 6 6 H 1.48500 * 109.47542 * 60.00135 * 3 2 1 7 7 C 1.37871 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00186 * 0.28045 * 7 2 1 10 10 C 1.53005 * 109.47203 * 179.71979 * 9 7 2 11 11 S 1.81400 * 109.46956 * 180.02562 * 10 9 7 12 12 O 1.42104 * 110.54299 * 294.02295 * 11 10 9 13 13 O 1.42094 * 110.54178 * 70.77028 * 11 10 9 14 14 N 1.65599 * 104.44976 * 182.39597 * 11 10 9 15 15 C 1.46504 * 119.99636 * 63.26976 * 14 11 10 16 16 H 1.08993 * 109.44130 * 334.86427 * 15 14 11 17 17 C 1.53074 * 109.43150 * 94.77936 * 15 14 11 18 18 C 1.53408 * 108.28430 * 168.25558 * 17 15 14 19 19 O 1.42831 * 108.36376 * 295.27328 * 18 17 15 20 20 C 1.35892 * 117.86321 * 49.13144 * 19 18 17 21 21 C 1.39346 * 118.48867 * 162.98734 * 20 19 18 22 22 F 1.35102 * 119.88210 * 359.81906 * 21 20 19 23 23 C 1.38125 * 120.23386 * 179.83562 * 21 20 19 24 24 C 1.38286 * 119.95564 * 359.97438 * 23 21 20 25 25 C 1.38294 * 119.96769 * 0.07022 * 24 23 21 26 26 F 1.35102 * 119.84502 * 179.97438 * 25 24 23 27 27 C 1.38197 * 121.79655 * 342.89229 * 20 19 18 28 28 H 0.97005 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47183 * 299.71985 * 9 7 2 30 30 H 1.09005 * 109.46881 * 59.72244 * 9 7 2 31 31 H 1.08994 * 109.47057 * 300.00084 * 10 9 7 32 32 H 1.08997 * 109.47225 * 60.00113 * 10 9 7 33 33 H 0.97000 * 120.00059 * 243.27271 * 14 11 10 34 34 H 1.09001 * 109.69990 * 287.94617 * 17 15 14 35 35 H 1.08991 * 109.70471 * 48.51466 * 17 15 14 36 36 H 1.08997 * 109.69153 * 54.99516 * 18 17 15 37 37 H 1.09009 * 109.68846 * 175.51795 * 18 17 15 38 38 H 1.08003 * 120.02321 * 179.97438 * 23 21 20 39 39 H 1.08005 * 120.01739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 -0.0053 10 6 2.2452 -3.6621 -0.0104 11 16 1.3381 -5.2330 -0.0182 12 8 0.6192 -5.3997 1.1962 13 8 0.7097 -5.4397 -1.2757 14 7 2.5190 -6.3923 0.0438 15 6 3.3994 -6.4794 1.2115 16 1 3.4543 -5.5055 1.6979 17 6 2.8396 -7.5094 2.1957 18 6 3.9131 -7.7977 3.2531 19 8 5.0275 -8.4143 2.6066 20 6 5.5133 -7.8275 1.4812 21 6 6.7872 -8.1834 1.0430 22 9 7.5088 -9.0905 1.7371 23 6 7.3150 -7.6118 -0.0983 24 6 6.5777 -6.6833 -0.8100 25 6 5.3133 -6.3270 -0.3775 26 9 4.5953 -5.4193 -1.0744 27 6 4.7789 -6.8979 0.7696 28 1 -0.4850 0.8401 0.0004 29 1 0.6243 -2.5609 0.8844 30 1 0.6243 -2.5529 -0.8956 31 1 2.8718 -3.6004 -0.9001 32 1 2.8718 -3.6084 0.8798 33 1 2.6278 -7.0137 -0.6931 34 1 1.9472 -7.1101 2.6776 35 1 2.5905 -8.4278 1.6643 36 1 4.2292 -6.8646 3.7194 37 1 3.5104 -8.4691 4.0117 38 1 8.3030 -7.8898 -0.4347 39 1 6.9892 -6.2360 -1.7028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360406973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:30 Heat of formation + Delta-G solvation = -200.734845 kcal Electronic energy + Delta-G solvation = -29114.632685 eV Core-core repulsion = 24591.645790 eV Total energy + Delta-G solvation = -4522.986895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.01508 -49.87263 -41.77944 -38.49126 -38.25424 -37.28977 -37.00701 -35.90668 -33.14562 -32.51797 -31.87233 -30.52675 -27.61593 -26.24303 -25.29186 -23.66911 -23.47129 -21.63525 -20.49791 -19.47124 -19.24818 -18.94866 -18.52828 -18.11505 -17.53637 -17.21642 -17.09256 -16.96110 -16.52715 -16.45788 -16.21091 -16.07510 -15.82166 -15.36517 -15.17850 -14.96649 -14.50394 -14.40518 -14.09005 -13.75530 -13.55119 -13.50588 -13.27633 -13.25270 -13.15117 -12.95931 -12.80946 -12.64650 -12.49164 -12.27354 -12.12681 -11.93574 -11.80191 -11.71828 -11.24274 -10.65452 -10.62988 -9.88114 -9.32514 -8.26128 -6.39676 -0.77331 -0.22851 -0.03826 1.41097 1.41435 1.54697 1.67987 2.00980 2.26183 2.37846 2.68406 2.96415 3.04278 3.07652 3.20060 3.21764 3.52905 3.65748 3.73031 3.90892 3.94402 4.00942 4.09082 4.20689 4.30861 4.49167 4.52843 4.69687 4.73653 4.83564 4.90129 4.93779 5.04946 5.07634 5.25529 5.28383 5.53280 5.68594 5.90550 6.06443 6.11504 6.73764 7.30490 8.86351 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.003419 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.557715 B = 8188.454966 C = 9003.656717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.586 4.586 11 S 2.619 3.381 12 O -0.984 6.984 13 O -0.995 6.995 14 N -1.099 6.099 15 C 0.194 3.806 16 H 0.108 0.892 17 C -0.177 4.177 18 C 0.060 3.940 19 O -0.313 6.313 20 C 0.136 3.864 21 C 0.042 3.958 22 F -0.136 7.136 23 C -0.071 4.071 24 C -0.153 4.153 25 C 0.127 3.873 26 F -0.133 7.133 27 C -0.193 4.193 28 H 0.267 0.733 29 H 0.011 0.989 30 H 0.005 0.995 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.424 0.576 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.185 0.815 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.819 -18.158 3.078 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.092 0.908 9 C -0.017 4.017 10 C -0.718 4.718 11 S 2.716 3.284 12 O -0.974 6.974 13 O -0.986 6.986 14 N -0.858 5.858 15 C 0.087 3.913 16 H 0.126 0.874 17 C -0.216 4.216 18 C -0.015 4.015 19 O -0.227 6.227 20 C 0.088 3.912 21 C 0.022 3.978 22 F -0.114 7.114 23 C -0.089 4.089 24 C -0.172 4.172 25 C 0.107 3.893 26 F -0.111 7.111 27 C -0.196 4.196 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.023 0.977 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.261 0.739 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.162 0.838 38 H 0.202 0.798 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 15.733 -18.302 3.298 24.359 hybrid contribution 0.165 1.195 -0.433 1.282 sum 15.898 -17.106 2.864 23.528 Atomic orbital electron populations 1.70102 1.08011 1.28243 1.50956 1.26080 0.95834 1.03763 0.94409 0.85289 0.79161 0.78132 0.77816 1.18019 1.20434 1.20284 1.21514 0.93904 0.90735 1.51366 0.90771 1.18822 0.93480 0.92903 0.96483 1.30335 1.12762 1.16540 1.12163 1.04571 0.74513 0.76315 0.73025 1.93513 1.70421 1.85505 1.47960 1.93510 1.74587 1.85431 1.45037 1.55466 1.52353 1.49461 1.28508 1.19576 0.84874 1.01072 0.85789 0.87429 1.22821 1.00608 1.00501 0.97696 1.23390 0.83055 1.00901 0.94131 1.86074 1.49156 1.51037 1.36440 1.18451 0.91300 0.93008 0.88412 1.17351 0.88532 0.96124 0.95759 1.91500 1.76595 1.64710 1.78614 1.21175 1.01969 0.94487 0.91272 1.21210 0.92316 1.00314 1.03334 1.17625 0.91010 0.89760 0.90872 1.91541 1.77774 1.64202 1.77599 1.19715 0.97899 1.03413 0.98607 0.92392 0.97032 0.97683 0.84356 0.84166 0.73942 0.87728 0.89196 0.89655 0.83773 0.79767 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.44 0.28 -56.05 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -29.48 9.11 25.60 0.23 -29.24 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.02 1.14 4.98 29.85 0.15 1.29 16 10 C -0.59 -22.12 5.71 71.98 0.41 -21.71 16 11 S 2.62 92.04 5.38 -56.49 -0.30 91.74 16 12 O -0.98 -38.76 17.45 -127.65 -2.23 -40.99 16 13 O -1.00 -41.58 18.08 -127.65 -2.31 -43.89 16 14 N -1.10 -27.44 3.72 -172.32 -0.64 -28.08 16 15 C 0.19 4.17 2.57 44.29 0.11 4.29 16 16 H 0.11 2.20 6.97 -2.39 -0.02 2.19 16 17 C -0.18 -3.27 5.80 30.76 0.18 -3.09 16 18 C 0.06 0.87 7.03 72.12 0.51 1.38 16 19 O -0.31 -6.05 10.09 -92.34 -0.93 -6.98 16 20 C 0.14 2.66 6.48 22.53 0.15 2.80 16 21 C 0.04 0.75 7.30 22.51 0.16 0.91 16 22 F -0.14 -2.68 17.04 44.97 0.77 -1.92 16 23 C -0.07 -0.86 10.01 22.25 0.22 -0.64 16 24 C -0.15 -2.09 10.02 22.29 0.22 -1.87 16 25 C 0.13 2.46 6.99 22.42 0.16 2.61 16 26 F -0.13 -3.07 14.64 44.97 0.66 -2.41 16 27 C -0.19 -3.83 5.49 -19.71 -0.11 -3.94 16 28 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.14 4.84 7.51 -2.39 -0.02 4.82 16 32 H 0.14 4.53 7.27 -2.39 -0.02 4.51 16 33 H 0.42 9.24 8.64 -96.75 -0.84 8.41 16 34 H 0.10 2.08 7.73 -2.39 -0.02 2.06 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -76.03 348.48 0.46 -75.58 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.28 Total: 14.89 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 2.86 Total: -46.89 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -0.36 Total: -84.13 kcal Atomic # 8 Polarization: -86.39 SS G_CDS: -5.47 Total: -91.85 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 1.42 Total: -4.33 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 92.04 SS G_CDS: -0.30 Total: 91.74 kcal Total: -76.03 0.46 -75.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360406973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.159 kcal (2) G-P(sol) polarization free energy of solvation -76.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds